genome.fa.s16.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  134  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41629530--41629582	22	2.4	23	81	6	74	54	9	3	32	1.50
41629795--41629845	21	2.4	22	80	6	70	54	7	3	33	1.47
41629442--41629972	263	2.0	265	94	0	922	41	9	15	33	1.80
41633332--41633390	26	2.4	25	80	8	66	64	3	3	28	1.26
41635838--41635898	24	2.4	27	81	13	83	54	1	0	44	1.10
41635908--41635957	19	2.7	19	82	11	59	64	0	8	28	1.22
41635916--41635956	20	2.2	20	86	8	59	68	0	4	26	1.10
41635951--41636020	31	2.2	33	82	14	85	44	1	5	48	1.35
41636780--41636819	20	2.0	20	85	4	55	32	7	0	60	1.25
41649959--41649987	15	1.9	15	100	0	58	37	0	0	62	0.96
41650335--41650375	13	3.1	13	85	3	55	70	2	2	24	1.11
41659415--41659499	35	2.4	35	86	2	125	42	32	12	11	1.80
41662776--41662893	52	2.3	53	81	5	136	57	5	5	30	1.46
41663153--41663191	3	13.3	3	94	5	71	66	0	0	33	0.92
41663152--41663187	17	2.1	17	100	0	72	63	0	0	36	0.94
41663153--41663190	20	1.9	20	100	0	76	65	0	0	34	0.93
41663153--41663203	9	5.4	10	82	13	56	66	1	0	31	1.03
41663413--41663451	19	2.0	21	85	10	55	69	5	10	15	1.34
41663608--41663665	22	2.6	22	84	7	73	43	17	3	36	1.66
41663621--41663699	21	3.8	19	80	12	77	39	16	7	36	1.77
41663655--41663698	21	2.1	21	100	0	88	38	13	9	38	1.77
41664127--41664234	44	2.5	44	84	3	137	29	22	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41663984--41664234	128	2.0	128	81	4	299	28	21	19	30	1.98
41664541--41664916	44	8.7	43	83	6	444	28	25	18	28	1.98
41664541--41664876	126	2.6	126	90	4	496	28	25	17	28	1.98
41664588--41664916	170	1.9	170	89	2	509	28	24	17	28	1.98
41664916--41665317	88	4.6	88	88	0	534	19	23	28	28	1.98
41664949--41665268	44	7.3	44	61	8	112	20	23	28	28	1.99
41671847--41671883	12	2.7	14	88	12	51	64	0	0	35	0.94
41671843--41671899	15	3.4	18	80	11	59	64	1	0	33	1.04
41672105--41672143	19	2.0	21	85	10	55	69	5	10	15	1.34
41672301--41672358	22	2.6	22	84	7	73	43	17	3	36	1.66
41672314--41672390	19	3.8	19	87	6	82	37	16	9	36	1.81
41675535--41675583	9	5.6	9	90	4	73	38	2	0	59	1.09
41675535--41675582	3	16.3	3	82	4	62	37	2	0	60	1.09
41675760--41675827	34	2.0	34	100	0	136	35	5	5	52	1.50
41680524--41680572	7	7.0	7	84	15	66	69	0	16	14	1.19
41680524--41680572	15	3.5	14	79	17	57	69	0	16	14	1.19
41681957--41682819	100	8.6	100	86	1	1086	30	19	24	25	1.98
41684353--41684391	3	13.3	3	83	5	53	35	2	0	61	1.10
41696518--41696549	4	8.0	4	100	0	64	25	0	0	75	0.81
41699053--41699085	16	2.1	16	94	5	59	66	6	3	24	1.28
41701965--41702023	21	2.8	20	80	14	57	54	3	1	40	1.27
41702005--41702060	12	5.4	11	74	24	50	58	0	3	37	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41702015--41702048	17	2.0	17	94	0	59	61	0	0	38	0.96
41701990--41702068	29	2.6	31	90	6	117	59	0	2	37	1.11
41701996--41702118	40	3.4	39	71	23	122	64	0	2	32	1.12
41702040--41702119	42	1.9	42	87	7	119	63	1	2	32	1.15
41705101--41705156	21	2.7	21	82	0	76	32	50	12	5	1.63
41705282--41705343	25	2.4	24	82	12	70	40	1	4	53	1.32
41708401--41708633	125	1.9	124	81	4	290	27	17	14	40	1.88
41708723--41708787	34	1.9	34	87	6	96	43	15	1	40	1.56
41708725--41708808	34	2.4	34	78	5	89	44	17	2	35	1.62
41708860--41708922	33	1.9	33	90	0	99	44	19	1	34	1.60
41716256--41716280	12	2.1	12	100	0	50	56	16	8	20	1.65
41725680--41725785	37	2.9	37	75	10	117	17	15	31	35	1.91
41729207--41729305	46	2.1	47	83	5	121	44	17	12	26	1.83
41730292--41730389	28	3.6	26	82	9	115	29	27	12	30	1.93
41732690--41732798	11	11.1	10	73	20	63	42	1	0	55	1.10
41732658--41732734	27	2.7	28	92	6	120	35	1	0	63	1.03
41732684--41732744	27	2.3	27	91	0	95	37	0	0	62	0.96
41732727--41732798	29	2.4	31	88	11	114	44	2	0	52	1.15
41732716--41732804	21	4.3	23	75	15	79	44	2	0	52	1.13
41732754--41732819	22	3.0	21	77	6	60	43	1	3	51	1.26
41733888--41733945	29	2.0	29	96	0	107	10	43	13	32	1.78
41738200--41738254	13	4.3	13	81	4	67	43	23	5	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41740178--41740214	9	4.1	9	89	0	56	43	13	13	29	1.82
41740554--41740584	16	1.9	16	93	0	53	25	29	0	45	1.54
41750146--41750179	17	2.0	17	100	0	68	23	29	0	47	1.52
41765025--41765050	3	8.7	3	100	0	52	69	0	0	30	0.89
41766558--41767201	44	14.6	43	68	14	219	28	22	18	30	1.97
41766687--41767379	129	5.2	129	78	8	701	28	22	18	30	1.97
41766985--41767183	99	2.0	99	97	0	371	28	23	16	32	1.96
41767084--41767804	44	16.7	43	67	10	265	28	21	19	30	1.97
41766552--41767552	175	5.7	175	76	9	910	28	21	18	30	1.97
41767168--41767463	87	3.4	87	73	12	291	28	21	20	29	1.98
41767384--41767807	126	3.3	127	91	1	643	28	21	18	30	1.97
41770196--41770284	8	10.3	9	81	13	82	8	0	10	80	0.89
41774258--41774303	21	2.1	22	84	4	58	15	10	8	65	1.47
41780262--41780336	21	3.4	22	74	5	62	32	2	4	61	1.28
41784106--41784225	50	2.4	50	92	0	195	27	15	17	40	1.89
41787081--41787142	5	12.2	5	79	20	67	40	0	0	59	0.97
41787084--41787134	3	19.0	3	75	22	51	39	0	0	60	0.97
41787081--41787136	8	6.8	8	81	18	62	39	0	0	60	0.97
41787151--41787246	40	2.3	40	89	3	147	63	8	28	0	1.23
41788609--41788720	37	2.9	39	73	8	111	22	20	27	29	1.98
41792201--41792241	22	1.9	21	85	5	55	4	39	2	53	1.35
41792398--41792464	29	2.2	29	78	5	71	50	11	14	22	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41793836--41793900	34	1.9	34	93	6	114	52	0	7	40	1.30
41811027--41811245	110	2.0	110	94	0	384	30	14	23	31	1.94
41822172--41822241	25	2.8	25	81	12	81	30	20	25	24	1.99
41825643--41825759	57	2.1	57	98	0	225	27	13	7	51	1.68
41828034--41828075	17	2.4	17	84	4	57	69	2	0	28	1.01
41831911--41831936	5	5.2	5	100	0	52	0	0	80	19	0.71
41832578--41832624	19	2.3	21	73	23	55	46	0	2	51	1.13
41832974--41832998	13	1.9	13	100	0	50	64	4	0	32	1.12
41832977--41833021	21	2.1	21	83	4	54	66	4	4	24	1.29
41834779--41834853	23	3.3	23	96	0	132	17	21	28	33	1.96
41839590--41839655	33	2.0	33	96	0	123	42	16	4	36	1.69
41841284--41841356	32	2.4	29	93	6	119	32	0	6	60	1.23
41842681--41842888	91	2.3	91	92	0	335	46	2	4	46	1.37
41842803--41842863	28	2.2	28	85	5	81	45	0	3	50	1.17
41842721--41842863	44	3.2	43	68	20	112	45	2	3	48	1.31
41842908--41843440	120	4.4	120	97	1	962	42	2	5	48	1.40
41843145--41843178	17	2.0	17	88	11	52	44	0	0	55	0.99
41843277--41843323	16	3.0	16	78	12	53	46	0	2	51	1.13
41842908--41843440	239	2.2	239	95	1	960	42	2	5	48	1.40
41844225--41844263	21	1.9	20	84	5	51	66	0	2	30	1.05
41844659--41844698	14	2.9	14	84	0	53	32	7	17	42	1.77
41844667--41844733	34	1.9	35	87	3	100	32	8	11	46	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41844682--41844721	20	2.0	20	90	0	62	27	10	12	50	1.72
41845136--41845163	13	2.2	13	100	0	56	32	0	14	53	1.41
41846570--41846597	12	2.3	12	100	0	56	46	17	7	28	1.75
41848976--41849036	30	2.0	30	87	6	88	21	40	0	37	1.53
41858550--41858592	22	2.0	22	85	0	59	13	20	23	41	1.88
41858598--41858860	43	6.1	43	83	4	239	27	27	19	25	1.99
41863779--41863829	21	2.5	20	81	15	59	37	33	1	27	1.68
41864665--41865071	41	9.9	41	88	1	564	28	28	23	18	1.98
41864665--41865071	124	3.3	122	88	2	571	28	28	23	18	1.98
41868305--41868351	19	2.5	19	93	3	78	44	10	4	40	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175