genome.fa.s16.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  41  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11445933--11446528	309	1.9	312	82	7	748	37	13	10	39	1.79
11448300--11448333	18	1.9	17	88	5	50	55	0	14	29	1.40
11449186--11449335	43	3.5	43	80	6	171	29	14	25	31	1.94
11449179--11449335	86	1.8	85	82	6	201	29	14	25	31	1.94
11452719--11452810	43	2.1	43	88	4	132	29	14	18	38	1.90
11452749--11452788	18	2.2	18	95	0	71	27	12	17	42	1.85
11467630--11467679	19	2.7	20	78	15	61	58	8	2	32	1.39
11470107--11470145	19	2.1	19	90	4	62	79	10	5	5	1.04
11470113--11470151	9	4.1	9	83	9	51	82	12	2	2	0.89
11478369--11478397	12	2.3	13	94	5	51	6	27	41	24	1.80
11479535--11479629	25	3.8	25	76	5	86	29	21	22	27	1.99
11487192--11487288	25	3.9	25	81	0	113	27	20	20	30	1.98
11489754--11489997	29	8.4	29	78	4	181	38	22	15	23	1.93
11489759--11489974	58	3.7	57	77	6	211	37	22	15	25	1.93
11489785--11489997	87	2.4	87	81	6	227	37	23	15	23	1.93
11495809--11495839	14	2.3	13	94	5	53	45	3	0	51	1.17
11505833--11505901	28	2.4	28	82	2	102	44	23	15	15	1.85
11506763--11506789	12	2.2	12	100	0	54	48	0	0	51	1.00
11514786--11514825	17	2.4	17	87	4	55	45	7	0	47	1.31
11533073--11533106	12	2.9	11	84	16	50	67	14	8	8	1.41
11538010--11538070	31	2.0	31	96	0	113	39	6	18	36	1.76
11539785--11539816	16	2.0	16	93	0	55	59	6	0	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11539983--11540021	15	2.4	16	83	8	53	38	2	0	58	1.12
11543471--11543552	41	2.0	41	90	4	130	51	12	6	30	1.63
11543590--11543630	19	2.2	19	95	0	73	43	17	4	34	1.70
11555906--11556033	63	2.0	64	98	1	249	42	28	6	21	1.77
11555925--11556055	63	2.1	63	84	2	165	45	32	3	18	1.67
11557088--11557135	22	2.2	22	84	0	60	27	25	2	45	1.64
11557174--11557210	16	2.2	17	86	13	51	21	2	5	70	1.20
11564239--11564290	23	2.2	24	82	3	61	32	21	1	44	1.63
11566387--11566419	16	1.9	18	88	11	52	39	0	15	45	1.46
11569283--11569368	36	2.4	36	88	3	120	27	6	19	45	1.76
11569275--11569377	9	11.4	9	83	4	109	28	5	20	45	1.74
11569510--11569536	9	3.0	9	100	0	54	22	11	22	44	1.84
11571791--11571833	14	2.8	15	86	10	52	72	0	2	25	0.97
11571809--11571833	7	3.6	7	100	0	50	76	0	0	24	0.80
11581074--11581138	19	3.4	19	68	18	53	60	9	4	26	1.47
11581072--11581138	20	3.5	20	72	15	59	59	8	4	26	1.47
11581074--11581150	38	2.0	38	87	0	109	59	9	3	27	1.45
11583283--11583313	15	2.1	15	100	0	62	38	6	32	22	1.80
11583471--11583509	18	2.3	17	86	8	53	38	5	12	43	1.65
11587627--11587657	15	2.1	15	100	0	62	38	6	32	22	1.80
11587815--11587853	18	2.3	17	86	8	53	38	5	12	43	1.65
11594924--11594974	26	2.0	26	96	0	93	45	11	13	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11601420--11601558	72	1.9	72	95	0	251	20	12	35	31	1.90
11601538--11601580	18	2.4	18	88	7	61	13	13	46	25	1.81
11606526--11606576	13	3.9	13	73	0	57	37	23	7	31	1.83
11610334--11610358	13	1.9	13	100	0	50	68	24	0	8	1.16
11611548--11611632	37	2.3	38	81	2	100	32	38	10	17	1.84
11612129--11612168	20	2.0	20	95	0	71	17	30	30	22	1.97
11615853--11615917	25	2.5	25	82	7	67	33	23	26	16	1.96
11615964--11616015	25	2.1	25	89	7	79	36	23	21	19	1.95
11616142--11616198	25	2.3	26	82	14	77	36	21	29	12	1.90
11619426--11619537	21	5.3	21	70	0	71	41	17	24	16	1.89
11619431--11619569	42	3.3	42	81	0	143	44	17	21	16	1.86
11624151--11624202	25	2.1	25	100	0	104	32	23	15	28	1.95
11644071--11644102	16	2.0	16	93	0	55	46	0	0	53	1.00
11645164--11645199	10	3.6	10	88	11	56	36	0	2	61	1.11
11656828--11656859	14	2.3	14	94	0	55	18	3	6	71	1.20
11660586--11660627	20	2.1	20	95	0	75	50	2	2	45	1.27
11660675--11660782	37	3.0	35	78	11	103	54	2	0	41	1.21
11660707--11660782	11	6.8	11	72	26	54	55	1	1	42	1.16
11660993--11661032	17	2.4	17	82	0	53	12	22	35	30	1.91
11669643--11670072	37	11.5	36	69	13	210	37	16	16	29	1.90
11669756--11670004	112	2.2	112	87	2	349	37	14	16	31	1.89
11669643--11670027	149	2.6	149	79	4	391	37	16	16	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11673419--11673450	17	1.9	16	93	6	55	18	12	3	65	1.38
11686190--11686227	13	2.8	14	80	19	53	65	5	5	23	1.34
11694584--11694614	15	2.1	14	94	5	53	41	45	0	12	1.42
11695889--11695934	19	2.5	19	83	13	60	73	6	2	17	1.14
11696475--11696650	35	5.1	35	85	1	219	38	28	16	17	1.91
11696484--11696650	69	2.4	70	85	1	228	38	28	16	16	1.90
11707512--11707658	45	3.3	44	76	7	136	27	14	24	33	1.94
11714421--11714486	8	8.5	8	86	6	73	40	0	0	59	0.98
11714421--11714493	39	1.9	37	83	10	94	42	0	0	57	0.98
11727728--11727771	19	2.3	19	88	0	61	56	27	2	13	1.49
11729672--11729730	29	2.0	29	93	0	100	49	0	11	38	1.40
11729736--11729763	9	3.1	9	100	0	56	32	10	10	46	1.73
11748052--11748110	31	2.0	30	83	9	77	38	11	11	37	1.79
11751403--11751807	100	4.1	100	93	0	668	26	20	22	30	1.98
11751420--11751789	50	7.4	50	74	1	339	25	20	22	31	1.98
11751794--11752254	219	2.1	219	94	0	805	28	20	18	31	1.97
11753480--11753520	15	2.9	14	82	7	55	12	17	2	68	1.31
11753482--11753514	15	2.2	15	94	0	57	9	15	0	75	1.03
11779840--11779865	13	2.0	13	100	0	52	23	15	0	61	1.33
11786836--11786898	21	3.0	21	90	2	90	33	33	4	28	1.78
11787197--11787254	13	4.6	13	77	12	59	75	3	8	12	1.14
11787209--11787254	23	2.0	24	91	4	76	80	2	6	10	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11800151--11800213	21	3.0	21	90	2	90	33	33	4	28	1.78
11801394--11801454	28	2.2	27	82	11	70	4	14	6	73	1.20
11806973--11807062	12	6.7	13	75	18	62	73	5	7	13	1.23
11806983--11807062	14	5.7	14	73	20	69	72	5	8	13	1.25
11806973--11807061	43	2.1	42	85	8	119	74	5	7	12	1.21
11807991--11808022	15	2.1	16	94	5	57	71	0	21	6	1.07
11808105--11808138	18	1.9	18	88	5	52	52	2	35	8	1.47
11814552--11814617	31	2.1	31	94	0	114	25	12	33	28	1.92
11815759--11815783	12	2.1	12	100	0	50	68	0	8	24	1.16
11820352--11820440	18	4.8	18	69	17	56	65	1	23	10	1.30
11827430--11827473	20	2.2	21	88	8	65	77	2	13	6	1.07
11829417--11829445	14	2.1	14	100	0	58	72	6	6	13	1.26
11831696--11831752	23	2.4	25	80	14	66	63	3	22	10	1.42
11838054--11838091	15	2.5	15	95	0	67	36	5	23	34	1.78
11848753--11848849	30	3.2	30	75	2	106	28	26	15	28	1.96
11850577--11850601	11	2.3	11	100	0	50	76	8	0	16	1.02
11851548--11851618	37	1.9	37	86	11	101	77	2	18	1	0.97
11851547--11851618	16	4.5	16	77	10	67	77	2	18	1	0.96
11851558--11851607	6	8.2	6	85	14	59	78	2	20	0	0.86
11851558--11851618	21	2.8	21	80	5	77	78	1	18	1	0.91
11851668--11851698	12	2.6	12	100	0	62	45	12	16	25	1.83
11853879--11853975	30	3.2	30	75	2	106	28	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11862087--11862135	10	4.9	10	78	9	55	26	16	30	26	1.97
11862089--11862135	20	2.3	20	89	7	69	25	17	31	25	1.97
11869414--11870260	424	2.0	425	97	0	1606	36	18	17	26	1.93
11872314--11872363	18	2.5	20	87	9	68	74	2	20	4	1.08
11877839--11877887	10	4.9	10	78	9	55	28	16	30	24	1.96
11877834--11877887	20	2.7	19	86	8	81	29	18	27	24	1.98
11880785--11880836	23	2.3	22	75	21	54	9	23	1	65	1.32
11883050--11883881	414	2.0	414	99	0	1637	41	17	14	25	1.88
11884953--11884987	4	9.0	4	87	6	54	74	0	2	22	0.95
11887228--11887274	23	2.1	23	84	7	62	51	12	4	31	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175