genome.fa.s16.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  70  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20786223--20786266	16	2.8	16	100	0	88	31	0	25	43	1.55
20786256--20786347	25	3.4	25	75	16	103	43	2	10	43	1.51
20786287--20786331	22	2.0	22	95	0	81	42	0	11	46	1.39
20786396--20786507	13	8.4	13	66	23	54	38	1	10	49	1.48
20786325--20787654	94	14.3	94	87	6	1759	37	2	10	49	1.50
20786325--20787654	125	10.7	125	88	5	1757	37	2	10	49	1.50
20786815--20786859	22	2.0	22	95	0	81	42	0	11	46	1.39
20787300--20787410	22	5.2	21	72	19	79	37	0	12	48	1.47
20787431--20787652	63	3.7	58	83	10	252	38	1	11	48	1.50
20787497--20787541	22	2.0	22	95	0	81	42	0	11	46	1.39
20786325--20787654	31	42.8	31	86	6	1752	37	2	10	49	1.50
20787535--20787654	32	3.8	31	85	7	161	39	1	10	48	1.48
20792102--20792139	15	2.5	15	86	0	58	36	42	0	21	1.53
20792720--20793020	41	7.3	41	88	0	361	34	25	24	15	1.95
20792679--20792915	82	2.9	82	86	1	242	35	24	25	14	1.93
20793100--20793175	40	1.9	40	86	5	109	15	30	26	27	1.96
20793302--20793381	27	3.3	22	69	26	54	41	0	1	57	1.07
20796917--20797020	41	2.5	41	84	0	127	27	20	22	29	1.98
20801629--20801724	31	3.1	31	95	3	174	45	13	9	31	1.75
20803822--20803899	23	3.3	23	79	18	88	1	16	11	70	1.23
20803823--20803899	24	3.2	24	78	9	77	1	16	11	70	1.24
20803818--20803952	47	2.8	49	82	12	147	2	14	10	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20803907--20803972	22	3.0	22	82	8	71	1	9	10	78	1.02
20803846--20803952	50	2.1	51	86	5	146	2	13	10	73	1.19
20803846--20803962	51	2.3	50	81	8	130	2	12	11	73	1.19
20803943--20803969	13	2.1	13	100	0	54	0	7	14	77	0.97
20803870--20803964	10	9.5	10	76	12	88	2	10	11	75	1.12
20804511--20804604	31	3.0	30	92	7	161	46	13	7	31	1.71
20808511--20808689	96	1.9	96	86	2	261	35	17	12	34	1.88
20815177--20815253	21	3.8	21	87	3	104	44	10	10	35	1.73
20815383--20815470	44	2.0	44	90	0	140	53	5	20	20	1.65
20815473--20815511	19	2.0	21	85	10	55	15	10	5	69	1.34
20815717--20815763	3	16.0	3	79	20	55	34	0	0	65	0.93
20815717--20815764	18	2.7	19	87	9	66	35	0	0	64	0.94
20818203--20818268	25	2.6	26	84	15	93	42	10	1	45	1.48
20818320--20818392	27	2.7	27	87	4	103	30	27	30	12	1.93
20818477--20818516	11	3.7	11	86	6	64	70	0	30	0	0.88
20818476--20818514	21	1.9	20	94	5	69	69	0	30	0	0.89
20818635--20818663	3	9.7	3	100	0	58	0	0	31	68	0.89
20819066--20819100	17	2.1	17	94	0	61	45	0	5	48	1.26
20824116--20824155	20	2.0	20	85	0	53	25	27	17	30	1.97
20824127--20824172	20	2.3	20	84	0	56	21	21	19	36	1.95
20831513--20831543	16	1.9	16	93	0	53	51	0	0	48	1.00
20832595--20832656	31	2.0	31	83	0	79	20	14	9	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20833081--20833130	20	2.5	20	80	3	55	34	0	2	64	1.05
20845757--20845823	34	1.9	35	87	3	100	44	14	8	31	1.76
20845855--20845911	29	1.9	30	82	3	71	33	14	14	38	1.85
20864861--20864953	27	3.5	27	71	5	73	26	13	25	33	1.94
20864914--20864973	26	2.3	26	85	0	75	25	16	28	30	1.97
20867919--20868047	19	6.8	19	93	0	222	35	9	17	37	1.81
20867919--20868070	38	3.9	38	92	3	232	35	8	17	38	1.80
20867919--20868070	57	2.6	57	89	4	223	35	8	17	38	1.80
20868526--20868564	3	12.7	3	83	5	51	33	0	0	66	0.92
20868887--20869273	88	4.4	88	95	0	677	27	28	23	20	1.99
20868954--20869271	44	7.2	45	62	6	157	27	27	24	19	1.99
20869293--20869408	44	2.6	44	85	10	166	28	18	25	27	1.98
20869476--20869579	50	2.1	50	87	0	145	27	22	26	23	1.99
20869770--20870233	44	10.7	44	68	16	157	29	20	22	27	1.98
20869816--20870099	84	3.3	84	72	12	270	27	19	23	29	1.98
20870072--20870233	45	3.6	45	83	3	157	30	21	21	25	1.98
20870744--20870816	19	3.8	19	90	0	110	36	8	16	38	1.79
20870757--20870839	19	4.0	22	85	6	70	38	6	15	39	1.72
20871023--20871067	23	2.0	23	81	0	54	22	0	15	62	1.33
20871294--20871323	13	2.4	13	94	5	53	30	0	0	70	0.88
20878230--20878262	14	2.3	15	89	5	50	27	12	33	27	1.92
20879656--20880062	44	9.2	45	62	5	157	28	25	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20879592--20880067	88	5.4	88	88	0	736	27	26	24	21	1.99
20880078--20880199	44	2.8	43	86	5	156	27	18	25	29	1.98
20880562--20880660	44	2.2	44	83	3	119	31	19	21	28	1.97
20880608--20880892	84	3.3	84	71	13	256	26	19	24	29	1.99
20880606--20880933	173	1.9	174	87	3	482	27	20	24	28	1.99
20880864--20881025	45	3.6	45	82	4	193	31	24	22	22	1.98
20881537--20881609	19	3.8	19	92	0	110	34	9	17	38	1.83
20881553--20881632	19	3.9	22	85	9	73	37	6	16	40	1.74
20881814--20881858	23	2.0	23	81	0	54	22	0	15	62	1.33
20882078--20882130	19	2.8	19	78	16	56	32	3	3	60	1.32
20884342--20884407	7	9.4	7	94	0	105	68	0	30	1	0.99
20885763--20885867	27	3.9	28	79	12	130	29	15	22	32	1.95
20885800--20885878	26	3.0	26	88	5	115	31	15	22	30	1.95
20888408--20888444	8	4.5	8	93	3	56	27	0	8	64	1.21
20891391--20891416	12	2.2	12	100	0	52	15	30	38	15	1.88
20892069--20892104	18	2.0	18	100	0	72	16	16	66	0	1.25
20898454--20898488	18	1.9	18	88	0	52	25	17	17	40	1.90
20900157--20900195	19	2.0	21	90	10	64	56	10	10	23	1.63
20913954--20914064	37	2.9	38	85	2	161	34	33	20	11	1.89
20924841--20924890	26	1.9	26	91	0	82	18	22	34	26	1.96
20924872--20925020	74	2.0	74	86	0	208	23	17	19	39	1.92
20924946--20925085	43	3.3	41	77	6	156	22	17	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20944980--20945032	28	2.0	26	82	10	63	35	1	3	58	1.27
20946135--20946181	7	6.7	7	95	0	85	27	2	14	55	1.51
20946836--20946878	18	2.4	18	88	0	59	18	27	9	44	1.80
20950575--20950989	126	3.3	126	91	1	629	29	22	16	31	1.96
20951029--20951207	98	1.9	95	84	5	243	40	15	5	39	1.69
20951258--20951323	33	1.9	33	87	6	96	48	39	0	12	1.40
20953260--20953350	48	1.9	47	88	2	137	39	26	15	18	1.90
20960250--20960418	27	6.2	27	84	4	196	30	26	15	27	1.96
20960262--20960417	82	1.9	81	88	3	233	29	28	15	26	1.96
20963281--20963504	40	5.6	40	87	4	274	26	28	20	24	1.99
20971112--20971335	40	5.6	40	87	4	274	26	28	20	24	1.99
20978657--20978683	5	5.4	5	100	0	54	18	0	0	81	0.69
20987124--20987171	3	16.0	3	85	8	62	2	2	27	68	1.11
20993012--20993080	21	3.3	21	95	0	120	46	18	23	11	1.82
20995211--20995328	41	2.9	41	85	0	164	23	24	24	27	2.00
20995734--20995767	14	2.3	15	90	5	52	35	0	29	35	1.58
20995854--20996029	89	2.0	89	91	0	289	25	1	30	43	1.62
20995998--20996038	21	1.9	22	85	5	57	9	0	51	39	1.35
20997149--20997213	22	2.9	23	77	9	80	26	44	3	26	1.69
21001066--21001305	43	5.6	42	84	6	173	21	16	30	31	1.95
21001106--21001305	43	4.7	43	86	3	269	20	17	32	30	1.95
21001370--21001411	22	1.9	22	95	0	75	40	28	21	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21002834--21002885	26	2.1	24	82	7	59	61	5	0	32	1.20
21004281--21004323	18	2.4	17	77	11	50	34	4	2	58	1.32
21015300--21015366	29	2.3	29	89	0	98	26	20	13	38	1.90
21018196--21018233	7	5.4	7	96	0	67	0	84	0	15	0.63
21021269--21021299	9	3.4	9	90	0	53	25	12	22	38	1.90
21028935--21028994	30	2.0	30	96	0	111	28	20	13	38	1.90
21057058--21057229	40	4.3	40	93	2	265	25	19	27	28	1.98
21057078--21057262	80	2.3	80	85	4	232	26	20	26	27	1.99
21058606--21058667	25	2.6	24	75	9	65	6	20	0	72	1.06
21058606--21058742	6	23.8	6	71	14	76	8	18	0	72	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175