genome.fa.s16.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  103  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32892568--32892678	44	2.5	43	78	4	123	31	16	20	31	1.95
32905039--32905087	26	2.0	24	88	8	71	65	2	6	26	1.27
32905198--32905229	10	3.1	10	95	4	55	78	0	3	18	0.89
32905257--32905311	27	2.1	26	83	10	67	69	0	1	29	0.99
32905337--32905383	20	2.3	20	85	0	67	57	0	6	36	1.24
32917277--32917315	21	1.9	21	89	5	62	76	10	2	10	1.10
32917315--32917360	5	9.0	5	88	4	65	80	0	4	15	0.86
32919071--32919148	26	3.0	24	75	15	68	67	2	5	24	1.23
32919073--32919178	45	2.4	43	80	14	110	68	2	4	23	1.22
32919075--32919177	46	2.2	46	84	8	129	67	2	4	24	1.23
32919074--32919181	51	2.1	52	80	11	125	68	2	4	24	1.22
32929033--32929127	40	2.4	40	87	0	136	48	7	20	24	1.74
32937201--32937255	23	2.3	25	84	9	78	10	7	12	69	1.37
32941548--32941673	25	5.0	25	80	0	126	30	23	20	25	1.98
32955803--32955836	16	2.2	15	89	5	50	44	0	0	55	0.99
32956147--32956184	19	2.0	19	100	0	76	10	47	15	26	1.78
32964920--32965123	27	7.5	27	85	4	178	28	15	28	27	1.96
32964920--32965123	54	3.8	54	80	8	220	28	15	28	27	1.96
32970018--32970043	8	3.2	8	100	0	52	42	23	0	34	1.54
32970997--32971027	12	2.6	12	94	0	53	38	0	3	58	1.15
32972015--32972063	20	2.5	19	76	3	53	42	8	8	40	1.64
32972980--32973023	20	2.2	20	88	8	63	59	6	18	15	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32975256--32975308	22	2.4	22	84	6	72	37	15	28	18	1.91
32981551--32981603	24	2.2	25	82	3	63	37	18	28	15	1.91
32985055--32985413	104	3.5	104	91	2	569	30	28	19	20	1.97
32985742--32985806	30	2.2	29	81	8	76	30	27	6	35	1.81
32985749--32985806	30	1.9	30	85	0	80	31	24	6	37	1.82
32987714--32987740	14	1.9	14	100	0	54	14	25	22	37	1.93
32989068--32989129	19	3.2	19	71	13	63	19	14	14	51	1.76
32989525--32989576	17	3.1	17	88	0	77	50	3	9	36	1.54
32989687--32989725	12	3.0	13	85	11	53	56	0	0	43	0.99
32989897--32990282	187	2.1	184	90	5	602	31	10	9	49	1.68
32989881--32990277	90	4.4	89	85	7	514	30	9	9	49	1.68
33009387--33009415	14	2.0	15	93	6	51	13	3	27	55	1.55
33010594--33010660	22	3.0	22	84	0	89	19	28	11	40	1.87
33010666--33010725	22	2.7	22	86	0	75	18	31	13	36	1.89
33011419--33011469	20	2.5	20	93	0	84	33	15	19	31	1.93
33012667--33012697	15	2.1	15	93	0	53	29	35	6	29	1.82
33016388--33016459	26	2.8	26	89	2	110	38	11	19	30	1.86
33016807--33016883	38	2.0	38	97	0	145	37	14	12	35	1.84
33017787--33017816	15	2.0	15	93	0	51	36	0	36	26	1.57
33020184--33020309	48	2.6	48	83	6	139	26	16	27	29	1.97
33020835--33020935	49	2.1	49	88	0	148	29	29	14	25	1.95
33023055--33023111	28	2.0	28	93	0	96	33	3	17	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33030338--33030374	12	3.0	13	84	7	51	21	32	0	45	1.52
33032106--33032137	16	1.9	17	93	6	57	37	0	3	59	1.13
33033327--33033389	28	2.2	28	83	8	74	63	9	4	22	1.43
33033568--33033636	25	2.7	26	86	6	95	66	2	2	27	1.20
33033602--33033649	21	2.3	20	82	10	60	66	0	6	27	1.15
33033568--33033653	25	3.5	24	83	12	88	66	2	3	27	1.20
33034838--33034883	24	1.9	24	86	8	67	28	0	10	60	1.30
33036088--33036126	20	2.0	19	90	5	60	58	5	5	30	1.41
33036212--33036274	29	2.1	30	85	8	85	36	3	3	57	1.31
33036223--33036280	19	3.0	18	73	14	53	37	5	1	55	1.33
33036594--33036653	25	2.5	24	81	10	61	66	0	11	21	1.23
33038075--33038113	20	2.0	20	100	0	78	10	0	2	87	0.65
33038074--33038105	14	2.3	14	94	0	55	9	0	3	87	0.64
33040528--33040694	25	6.7	26	86	3	114	17	23	22	35	1.95
33040527--33040694	50	3.4	49	80	7	178	18	23	22	35	1.95
33040609--33040750	50	2.8	50	86	3	169	21	22	21	35	1.96
33040604--33040742	75	1.9	75	81	3	172	20	22	22	34	1.97
33040604--33040765	75	2.2	75	79	4	166	20	22	22	34	1.97
33040604--33040765	50	3.2	49	83	6	155	20	22	22	34	1.97
33040604--33040765	25	6.5	25	83	7	100	20	22	22	34	1.97
33041201--33041308	40	2.7	39	77	5	119	37	24	18	20	1.94
33041376--33041600	41	5.5	41	92	0	342	20	20	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33041998--33042040	14	3.0	14	86	3	50	30	2	30	37	1.70
33042324--33042358	7	5.0	7	89	0	52	17	0	51	31	1.45
33045936--33045975	15	2.9	13	86	13	62	47	0	2	50	1.14
33046604--33046628	12	2.1	12	100	0	50	36	8	8	48	1.62
33049455--33049910	47	9.6	47	90	2	696	33	7	28	29	1.86
33049455--33049910	96	4.8	96	92	1	749	33	7	28	29	1.86
33049455--33049910	143	3.2	140	90	3	705	33	7	28	29	1.86
33050029--33050166	37	3.7	37	94	0	231	25	18	30	26	1.98
33051775--33052001	43	5.3	43	84	0	249	21	18	29	30	1.97
33061877--33061949	25	2.9	25	95	0	128	19	30	19	31	1.96
33064102--33064158	30	1.9	30	82	7	71	66	0	8	24	1.20
33064133--33064185	5	10.2	5	76	8	52	75	0	3	20	0.96
33069724--33069784	29	2.1	30	90	3	97	39	1	1	57	1.18
33071500--33071530	14	2.2	14	100	0	62	32	0	38	29	1.57
33079801--33079890	43	2.1	43	80	2	99	47	2	7	42	1.44
33080074--33080113	20	1.9	21	90	10	64	45	2	5	47	1.38
33080102--33080142	14	2.9	15	82	10	59	43	0	0	56	0.99
33080068--33080122	22	2.4	23	74	20	62	49	1	3	45	1.30
33081649--33081708	25	2.4	24	83	8	75	68	5	0	26	1.10
33082179--33082219	18	2.3	18	87	8	57	29	2	4	63	1.28
33082385--33082460	31	2.5	31	76	4	73	47	13	14	25	1.80
33095395--33095443	19	2.6	19	93	0	80	22	14	14	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33098687--33098723	17	2.2	16	90	4	56	51	0	0	48	1.00
33099990--33100045	21	2.7	21	88	0	85	26	8	35	28	1.87
33103411--33103469	25	2.4	25	72	25	63	59	3	33	3	1.31
33103529--33103572	6	7.2	6	84	5	61	40	0	59	0	0.98
33103529--33103572	18	2.4	19	92	3	72	40	0	59	0	0.98
33103529--33103581	24	2.2	24	86	0	70	41	0	58	0	0.98
33107176--33107246	28	2.6	28	76	12	78	38	1	1	59	1.15
33113998--33114029	16	2.0	16	100	0	64	25	0	25	50	1.50
33118139--33118309	41	4.2	41	89	0	243	30	19	27	22	1.98
33118111--33118309	82	2.4	82	85	1	265	31	18	26	24	1.98
33125839--33126018	41	4.4	41	92	0	279	30	21	27	20	1.98
33125811--33126025	41	5.2	41	89	0	268	31	20	26	22	1.98
33127835--33127946	31	3.6	31	76	7	120	45	16	8	28	1.78
33127817--33127934	61	1.9	61	84	3	157	44	16	8	29	1.77
33127818--33127962	31	4.7	31	76	6	107	44	17	8	30	1.78
33127973--33128218	31	8.0	31	70	17	147	39	18	7	34	1.79
33127966--33128216	92	2.7	92	91	0	385	40	17	7	34	1.78
33146709--33147087	190	2.0	189	96	0	704	41	17	15	26	1.89
33154724--33154758	18	1.9	18	88	0	52	28	0	2	68	1.04
33154911--33154996	33	2.7	31	78	15	104	50	8	6	34	1.59
33160376--33160837	177	2.6	175	79	8	444	42	9	12	34	1.76
33160437--33160825	89	4.4	88	81	10	377	41	10	13	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33162933--33162972	20	2.0	21	90	9	66	5	15	10	70	1.32
33162937--33162984	21	2.3	20	83	16	55	4	12	6	77	1.11
33163761--33163824	19	3.3	19	89	8	101	39	9	14	37	1.78
33163762--33163837	21	3.7	21	92	3	120	40	10	11	36	1.76
33164034--33164072	19	2.0	21	85	10	55	15	10	5	69	1.34
33169532--33169580	7	6.7	7	77	9	53	71	2	14	12	1.23
33169542--33169586	14	3.1	14	83	6	54	73	0	13	13	1.10
33170823--33171795	132	7.5	132	87	3	1416	30	21	24	24	1.99
33171262--33171446	44	4.2	44	65	13	128	30	21	22	25	1.98
33170823--33171795	257	3.7	257	86	5	1285	30	21	24	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175