genome.fa.s16.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  112  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35251911--35252070	36	4.4	36	76	11	123	30	14	11	43	1.80
35251911--35252070	18	8.8	18	71	13	105	30	14	11	43	1.80
35251912--35252050	54	2.6	54	83	4	163	30	14	11	43	1.81
35251939--35252051	17	6.4	17	68	18	61	31	13	11	43	1.79
35251956--35252110	18	8.7	18	66	15	54	34	12	10	43	1.76
35256760--35256786	2	13.5	2	100	0	54	51	0	48	0	1.00
35259408--35259478	33	2.2	33	87	5	99	23	40	11	23	1.87
35261180--35261247	19	3.5	19	72	21	52	29	7	26	36	1.83
35268051--35268143	30	3.1	30	95	0	159	55	13	3	26	1.54
35273743--35273779	18	1.9	19	89	10	58	83	8	0	8	0.80
35276085--35276188	44	2.4	44	83	3	129	29	22	21	26	1.99
35277660--35277726	6	11.8	6	84	15	74	0	19	0	80	0.71
35277662--35277745	5	16.8	5	86	7	100	1	14	1	83	0.77
35284265--35284295	9	3.4	9	90	0	53	38	22	12	25	1.90
35288201--35288402	106	1.9	106	84	6	275	30	18	19	31	1.96
35290119--35290363	69	3.6	69	75	6	264	50	14	11	23	1.75
35290125--35290387	136	1.9	136	88	1	393	48	14	12	25	1.77
35290471--35290548	39	2.0	39	84	0	102	55	7	12	24	1.63
35296730--35296769	20	2.0	21	85	5	55	40	32	0	27	1.57
35304811--35304842	3	10.7	3	100	0	64	31	0	0	68	0.90
35314187--35314212	6	4.3	6	100	0	52	30	0	15	53	1.42
35314418--35314461	21	2.1	20	84	16	54	56	13	4	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35325858--35325971	59	1.9	59	92	0	192	29	30	8	30	1.87
35328475--35328529	27	2.0	28	85	3	76	49	0	9	41	1.34
35331688--35331911	67	3.3	66	79	9	213	33	16	25	24	1.96
35331688--35331923	68	3.5	67	80	7	239	31	17	26	24	1.97
35336511--35336601	10	9.0	10	68	26	50	39	2	2	56	1.24
35336549--35336599	24	2.0	26	88	7	79	41	1	0	56	1.10
35336622--35336688	35	1.9	34	85	8	91	67	4	22	5	1.31
35337443--35337493	22	2.4	22	75	15	54	37	0	15	47	1.46
35343298--35343402	20	5.2	20	83	0	129	39	21	27	11	1.88
35343301--35343402	40	2.5	40	92	3	170	39	21	27	11	1.88
35343383--35343513	22	6.0	22	70	17	85	45	13	22	17	1.84
35343420--35343507	44	2.0	44	84	8	117	45	11	23	19	1.83
35344664--35344708	23	2.0	23	82	8	56	28	20	8	42	1.82
35350404--35350433	14	2.2	14	94	5	53	56	3	0	40	1.16
35351705--35351732	4	7.0	4	100	0	56	75	0	0	25	0.81
35355899--35355969	22	3.3	21	76	16	74	47	15	11	25	1.78
35355874--35356000	44	2.8	45	84	5	161	43	16	14	25	1.86
35372399--35372625	123	1.8	124	87	2	341	44	16	5	33	1.70
35372399--35372642	63	4.0	62	86	6	325	44	16	5	33	1.71
35380093--35380320	40	5.8	40	83	6	259	18	25	19	35	1.95
35380093--35380300	79	2.6	79	84	6	278	19	26	20	33	1.96
35380239--35380302	20	3.2	20	68	0	56	18	31	17	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35380093--35380309	119	1.8	119	85	2	310	18	26	20	34	1.96
35380093--35380335	79	3.1	76	80	8	263	19	25	19	34	1.96
35380093--35380335	119	2.0	119	82	3	292	19	25	19	34	1.96
35381416--35381577	40	4.1	40	87	1	227	19	31	19	30	1.96
35381472--35381537	20	3.3	20	69	12	64	18	34	16	30	1.93
35381416--35381577	79	2.0	80	86	1	227	19	31	19	30	1.96
35400482--35400519	20	1.9	20	84	10	51	60	5	0	34	1.19
35402579--35402627	13	3.6	13	80	5	53	30	2	4	63	1.24
35403170--35403213	17	2.3	18	81	18	54	22	2	4	70	1.17
35405364--35405407	24	1.9	22	90	9	70	22	2	2	72	1.07
35406800--35406843	14	2.9	15	80	10	54	31	31	15	20	1.94
35407192--35407288	46	2.1	46	86	7	135	38	13	24	23	1.91
35412795--35412837	16	2.6	16	79	13	52	39	11	6	41	1.68
35418745--35418792	11	4.4	11	82	17	55	22	35	0	41	1.54
35424262--35424550	126	2.3	126	84	1	382	28	20	17	33	1.96
35426632--35426668	17	2.3	17	86	9	51	16	0	16	67	1.23
35427919--35427999	41	2.0	41	87	0	117	27	19	23	29	1.98
35427917--35428025	41	2.7	41	82	2	112	29	19	23	27	1.98
35440875--35440913	6	6.5	6	100	0	78	33	15	51	0	1.44
35447593--35447621	12	2.3	13	94	5	51	20	6	6	65	1.40
35461778--35461842	32	2.1	32	97	2	123	30	9	12	47	1.72
35469647--35469785	21	6.5	21	71	3	98	15	20	17	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35469629--35469787	42	3.7	42	80	3	156	15	22	16	45	1.85
35472237--35472323	26	3.4	26	77	4	88	35	20	26	17	1.95
35472760--35472814	10	5.4	10	84	4	56	43	14	0	41	1.45
35472760--35472816	21	2.8	20	81	5	60	43	15	0	40	1.47
35472768--35472816	5	9.6	5	77	4	53	42	16	0	40	1.48
35473303--35473329	13	2.1	13	100	0	54	22	14	0	62	1.31
35477734--35477768	18	1.9	18	94	0	61	14	17	2	65	1.38
35486685--35486714	13	2.3	13	94	0	51	33	3	13	50	1.58
35486809--35487051	50	4.8	50	89	0	351	25	23	31	19	1.98
35487589--35487625	12	3.2	12	77	14	51	43	0	16	40	1.48
35496309--35496347	18	2.2	18	86	9	53	69	7	20	2	1.26
35497163--35497421	30	8.6	30	84	5	263	43	15	6	34	1.73
35497178--35497398	60	3.7	60	87	1	298	42	15	6	34	1.74
35497178--35497398	90	2.4	90	88	1	316	42	15	6	34	1.74
35499355--35499433	41	1.9	41	97	0	149	31	6	13	48	1.68
35503125--35503165	19	2.2	19	95	0	73	39	4	14	41	1.67
35503203--35503283	41	2.0	41	95	0	144	29	8	14	46	1.75
35505887--35505922	18	2.0	18	94	0	63	38	30	16	13	1.88
35513202--35513360	69	2.3	69	79	4	160	38	15	19	26	1.92
35516428--35516457	13	2.3	13	94	0	51	33	3	13	50	1.58
35516552--35516694	50	2.8	50	83	1	178	25	23	31	20	1.98
35519197--35519532	120	2.8	120	94	1	593	49	5	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35524126--35524177	21	2.6	21	90	6	81	38	15	11	34	1.83
35524988--35525085	51	2.0	50	82	8	119	59	5	6	29	1.43
35526021--35526071	13	4.0	13	80	9	52	45	0	1	52	1.12
35526091--35526120	15	1.9	16	93	6	53	56	3	0	40	1.16
35526205--35526257	23	2.3	23	87	6	72	45	0	7	47	1.31
35532133--35532172	19	2.3	18	87	12	57	25	7	32	35	1.84
35535633--35535832	25	8.1	25	70	11	110	33	20	26	20	1.97
35535689--35535772	24	3.5	24	81	4	89	32	20	29	17	1.96
35543367--35543457	24	3.8	24	77	8	71	36	18	25	19	1.95
35543479--35543546	26	2.6	26	81	6	84	33	19	25	22	1.97
35543618--35543673	25	2.2	25	87	0	76	41	25	26	7	1.81
35543626--35543676	25	2.0	25	92	0	84	39	23	25	11	1.89
35543975--35544018	5	8.8	5	89	0	70	36	22	0	40	1.54
35543971--35544018	25	1.9	25	100	0	96	33	25	0	41	1.55
35548951--35549019	31	2.3	30	80	5	93	33	8	17	40	1.80
35550473--35550500	14	2.0	14	100	0	56	28	7	21	42	1.79
35550587--35550900	27	11.6	27	83	2	344	38	9	21	30	1.86
35550587--35550956	54	6.9	54	80	4	347	38	11	21	28	1.88
35550587--35550955	27	13.7	26	78	10	159	38	11	21	28	1.87
35552954--35553019	21	3.2	21	64	12	55	19	34	16	28	1.94
35552858--35553079	41	5.4	40	85	3	282	20	29	15	34	1.94
35552858--35553079	123	1.8	123	87	3	331	20	29	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35557887--35557955	36	1.9	36	87	0	102	53	7	0	39	1.29
35557887--35557947	18	3.4	18	77	8	70	52	8	0	39	1.31
35557889--35557966	36	2.2	36	83	4	95	52	7	0	39	1.30
35568979--35569051	28	2.6	29	80	12	80	30	5	1	63	1.26
35571498--35571539	21	2.0	21	85	0	57	28	19	26	26	1.98
35572933--35572959	10	2.7	10	100	0	54	11	18	22	48	1.79
35575025--35575073	24	2.0	24	84	0	62	36	2	8	53	1.43
35580532--35580728	87	2.3	87	84	1	243	35	15	21	27	1.94
35584005--35584135	53	2.5	53	89	0	190	34	12	25	28	1.92
35584261--35584423	61	2.7	61	89	0	245	34	15	21	28	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175