genome.fa.s16.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  122  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38297624--38297756	9	15.2	9	70	13	64	47	18	3	30	1.64
38297688--38297756	27	2.6	27	80	11	81	50	18	0	30	1.47
38297769--38298193	31	13.7	31	75	18	320	47	11	2	38	1.54
38297862--38297927	26	2.8	22	79	18	78	48	9	1	40	1.44
38297909--38298006	22	4.6	22	70	19	91	50	11	3	35	1.54
38298032--38298083	16	3.1	16	88	5	77	46	21	0	32	1.52
38298032--38298337	9	36.3	9	65	21	76	43	15	1	38	1.58
38297934--38298242	163	1.9	165	86	9	441	45	14	2	37	1.57
38298198--38298243	16	2.9	16	100	0	92	45	23	0	30	1.53
38298168--38298404	91	2.6	93	82	6	247	44	16	2	36	1.61
38303835--38303961	66	1.9	66	87	3	184	40	17	25	16	1.90
38303835--38303999	66	2.5	66	83	3	163	40	18	26	14	1.90
38303983--38304087	21	5.0	21	82	0	84	35	17	42	4	1.70
38303995--38304087	42	2.2	42	88	0	132	35	16	43	5	1.71
38304251--38304280	9	3.2	9	90	9	51	30	0	3	66	1.07
38304435--38304553	43	2.7	43	77	11	136	20	19	30	30	1.97
38304524--38304816	43	6.8	43	83	0	354	31	26	19	22	1.98
38304524--38304816	86	3.4	86	93	0	478	31	26	19	22	1.98
38304982--38305025	21	2.1	21	91	0	70	40	29	18	11	1.85
38305974--38306053	29	2.8	29	100	0	160	50	10	11	28	1.70
38306226--38306260	16	2.1	17	89	5	54	51	5	0	42	1.25
38316263--38316309	24	2.0	24	86	0	67	8	4	27	59	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38317455--38317550	31	3.1	31	95	3	174	31	9	13	45	1.75
38318160--38318207	20	2.3	22	75	7	55	70	8	18	2	1.22
38318102--38318220	56	2.1	56	86	7	163	73	9	15	2	1.19
38321255--38321317	31	2.0	32	96	3	119	31	9	15	42	1.79
38325570--38325864	128	2.3	128	93	1	493	32	21	17	28	1.96
38325657--38326083	172	2.5	173	84	7	541	29	22	18	28	1.98
38326010--38326127	44	2.7	44	83	13	161	26	25	20	27	1.99
38325833--38326125	89	3.4	88	72	11	280	28	23	20	27	1.99
38325828--38326127	45	6.9	45	70	16	177	28	24	19	28	1.99
38334132--38334177	24	1.9	24	86	0	65	10	26	17	45	1.81
38349134--38349178	20	2.2	21	92	4	74	51	2	2	44	1.26
38355701--38355795	25	3.8	25	74	14	79	29	24	18	27	1.98
38363132--38363165	17	2.0	17	94	0	59	55	5	14	23	1.61
38363592--38363645	21	2.6	21	87	0	81	25	38	0	35	1.57
38364358--38364405	24	2.0	24	100	0	96	25	20	20	33	1.97
38370741--38370799	28	2.1	28	100	0	118	44	25	3	27	1.70
38385922--38385946	9	2.8	9	100	0	50	84	8	0	8	0.79
38386868--38386919	24	2.2	24	96	0	95	28	11	28	30	1.92
38387243--38387628	178	2.2	177	83	6	469	31	18	22	27	1.97
38387204--38387650	222	2.0	222	89	2	675	32	18	22	27	1.97
38387195--38387650	44	10.3	44	78	5	332	32	18	21	26	1.97
38387759--38387920	42	3.8	41	77	6	128	29	15	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38387657--38388053	181	2.2	179	84	4	510	31	17	21	29	1.97
38388138--38388424	89	3.2	89	81	2	335	27	20	25	26	1.99
38388245--38388379	45	3.0	45	67	20	111	31	19	21	27	1.97
38388519--38388724	44	4.7	44	68	12	145	27	18	25	28	1.98
38388406--38388795	131	3.0	130	87	3	566	28	20	25	26	1.99
38389243--38389300	19	2.7	22	84	10	68	36	8	17	37	1.80
38395359--38395399	17	2.4	17	84	8	57	80	2	14	2	0.92
38395357--38395399	20	2.2	19	87	4	59	79	2	16	2	0.95
38395422--38395502	41	2.0	41	100	0	162	41	12	13	32	1.82
38399531--38400020	166	3.0	166	95	0	863	27	24	20	27	1.99
38419687--38419736	26	1.9	26	91	0	82	34	12	6	48	1.65
38425446--38425500	16	3.4	16	78	9	51	34	10	9	45	1.71
38425577--38425617	16	2.6	16	84	0	55	41	24	9	24	1.85
38426087--38426117	15	2.0	16	93	6	55	41	0	0	58	0.98
38433721--38433956	39	6.1	39	81	2	222	31	5	18	44	1.73
38433719--38433953	117	2.0	117	82	0	281	30	5	19	45	1.73
38438145--38438185	21	2.0	21	95	0	73	36	4	17	41	1.71
38438406--38438472	27	2.4	28	92	2	109	34	1	13	50	1.51
38438864--38438903	18	2.2	18	86	0	53	32	17	15	35	1.91
38439331--38439864	269	2.0	269	97	0	1014	32	13	18	36	1.89
38439994--38440060	27	2.4	28	92	2	109	34	1	13	50	1.51
38441051--38441095	21	2.1	21	95	0	81	40	2	15	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38441077--38441722	269	2.4	269	99	0	1274	32	12	18	36	1.88
38441854--38441923	33	2.2	32	89	2	104	34	1	12	51	1.49
38441874--38441937	33	1.9	33	87	0	92	34	1	10	53	1.46
38442310--38442349	18	2.2	18	86	0	53	32	17	15	35	1.91
38444309--38444384	25	3.0	25	84	0	80	32	23	19	23	1.97
38444339--38444395	25	2.3	25	90	0	87	29	28	21	21	1.98
38445973--38446071	51	1.9	51	85	0	135	28	8	16	47	1.74
38445965--38446072	17	6.4	17	71	0	81	28	9	16	45	1.78
38448678--38448727	23	2.1	23	85	3	64	18	20	16	46	1.85
38451052--38451149	43	2.3	43	80	7	110	18	18	23	39	1.92
38454708--38454756	23	2.1	23	96	0	89	44	4	32	18	1.68
38459212--38459260	23	2.1	23	96	0	89	44	4	32	18	1.68
38465660--38465762	39	2.6	41	89	7	135	32	13	17	36	1.89
38465674--38465762	39	2.3	39	94	1	153	31	15	15	37	1.90
38465784--38465847	32	2.0	32	90	0	101	26	25	4	43	1.74
38465784--38465833	16	3.1	16	73	21	59	26	26	6	42	1.78
38468710--38468778	28	2.5	28	80	4	86	39	23	20	17	1.92
38468928--38469001	27	2.8	27	89	2	105	33	22	24	18	1.97
38469195--38469260	27	2.4	27	84	0	96	22	19	19	37	1.94
38471993--38472164	40	4.3	40	86	5	206	26	27	20	25	1.99
38471993--38472217	80	2.8	79	77	7	213	26	27	20	25	1.99
38472149--38472226	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38479886--38480057	40	4.3	40	87	2	213	26	27	20	25	1.99
38483264--38483329	29	2.3	28	84	7	89	30	3	18	48	1.63
38485113--38485151	20	2.0	20	100	0	78	41	5	15	38	1.69
38485720--38485749	15	2.0	15	100	0	60	26	26	6	40	1.81
38496850--38496879	15	2.0	15	93	0	51	30	26	6	36	1.82
38519319--38519369	22	2.3	22	83	6	59	47	11	13	27	1.78
38522047--38522118	34	2.1	34	100	0	144	18	20	16	44	1.87
38531309--38531379	27	2.6	27	79	0	88	33	23	16	25	1.96
38535569--38535809	122	2.0	121	82	6	299	29	14	25	31	1.94
38537086--38537118	16	2.1	16	94	0	57	42	24	9	24	1.83
38541580--38541608	15	1.9	15	100	0	58	48	3	27	20	1.66
38544019--38544060	16	2.6	16	84	3	57	26	11	2	59	1.45
38544892--38544965	32	2.3	32	88	4	105	22	16	35	25	1.95
38545805--38545933	40	3.2	40	79	14	142	36	16	30	17	1.91
38545845--38545906	20	3.2	20	74	2	72	35	17	32	14	1.90
38555689--38555792	21	5.0	21	91	0	163	45	19	20	15	1.86
38558105--38558248	46	3.1	46	83	4	173	30	21	18	29	1.97
38558076--38558248	46	3.7	46	80	3	168	29	19	19	31	1.96
38559808--38559855	23	2.1	23	88	0	69	27	18	16	37	1.92
38569173--38569199	12	2.2	12	100	0	54	44	14	7	33	1.73
38571680--38571735	23	2.5	23	88	2	87	28	10	14	46	1.78
38572540--38572579	19	2.1	19	85	0	53	55	5	2	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38578628--38578669	18	2.2	19	91	8	68	9	7	4	78	1.08
38578638--38578677	18	2.2	18	90	0	62	12	7	2	77	1.07
38580281--38580388	37	3.0	36	77	18	100	40	2	3	52	1.33
38580298--38580495	68	3.0	67	73	17	214	41	3	4	50	1.38
38580367--38580483	62	1.9	59	86	5	162	43	3	2	50	1.32
38582862--38582899	19	2.0	19	90	10	60	42	10	10	36	1.74
38585114--38585209	30	3.2	30	70	14	88	41	3	7	47	1.47
38585114--38585231	61	1.9	60	89	6	184	41	3	6	48	1.46
38585344--38585394	25	2.0	26	84	3	68	39	7	7	45	1.62
38587516--38587601	32	2.7	32	85	0	118	16	38	23	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175