genome.fa.s16.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  102  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32552033--32552164	45	2.9	45	80	2	131	43	12	19	24	1.85
32556163--32556871	353	2.0	353	99	0	1409	26	18	19	35	1.95
32561468--32561604	49	2.6	52	81	11	172	24	18	32	24	1.97
32568414--32568443	8	3.8	8	100	0	60	63	0	0	36	0.95
32583224--32583323	52	1.9	52	93	0	173	33	16	10	41	1.81
32585061--32585483	209	2.0	209	95	0	756	45	9	14	30	1.78
32587529--32587599	36	2.0	35	89	5	108	60	7	5	26	1.45
32593232--32593473	50	4.9	50	83	4	269	21	28	21	28	1.99
32597181--32597324	41	3.5	41	85	5	204	27	19	27	25	1.99
32599749--32599873	44	2.9	43	81	9	139	31	28	17	22	1.97
32602413--32602593	40	4.6	40	83	0	202	46	25	13	13	1.80
32608455--32608616	43	3.8	42	79	3	155	30	24	16	29	1.96
32616145--32616184	21	1.9	21	90	10	64	45	20	5	30	1.72
32618371--32618528	43	3.7	43	83	6	205	29	23	16	31	1.96
32619876--32619918	22	2.0	22	85	0	59	48	9	6	34	1.62
32621432--32622011	114	5.1	114	83	5	642	25	22	25	26	2.00
32621432--32622013	227	2.6	226	82	5	696	25	22	25	26	2.00
32622662--32622707	14	3.3	14	81	0	56	15	0	43	41	1.46
32623056--32623104	14	3.6	14	83	5	55	12	0	42	44	1.41
32623065--32623108	14	3.2	14	83	6	63	6	0	43	50	1.29
32624124--32624471	146	2.4	146	77	8	364	27	15	22	35	1.94
32625413--32625444	15	2.1	15	94	0	55	25	6	15	53	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32626417--32626528	13	8.5	13	79	5	109	41	9	2	46	1.51
32626670--32626868	29	6.4	29	64	21	100	45	14	1	39	1.51
32626730--32626910	67	2.8	64	73	17	178	45	14	1	38	1.52
32626794--32626938	28	5.0	28	75	15	123	45	15	1	37	1.55
32626670--32626999	157	2.1	157	96	0	606	44	14	1	39	1.54
32626889--32626938	16	3.4	16	73	21	63	46	18	2	34	1.60
32626670--32627062	157	2.5	157	90	4	564	45	15	2	37	1.58
32627046--32627305	25	10.1	25	71	17	112	45	21	1	31	1.63
32627046--32627294	9	28.8	9	73	15	195	44	22	2	30	1.64
32627026--32627302	71	4.0	68	70	19	173	45	21	2	30	1.64
32627016--32627173	79	2.0	77	84	9	203	46	22	2	29	1.65
32633228--32633499	43	6.4	41	79	8	258	26	19	19	34	1.96
32633298--32633499	85	2.4	85	83	2	253	27	18	18	35	1.94
32635729--32635767	14	2.8	14	100	0	78	53	0	15	30	1.42
32637607--32637647	21	2.0	21	90	0	64	29	21	29	19	1.98
32640469--32640512	20	2.2	20	84	8	54	31	4	9	54	1.52
32640669--32640698	13	2.3	13	100	0	60	73	0	0	26	0.84
32643596--32643756	54	3.0	54	86	0	232	28	23	15	32	1.95
32646037--32646219	40	4.6	40	80	10	189	25	21	27	25	2.00
32646088--32646252	79	2.1	79	83	6	201	26	20	26	26	1.99
32662864--32662902	17	2.3	17	86	8	53	74	0	2	23	0.94
32667358--32667384	14	1.9	14	100	0	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32667369--32667445	29	2.7	28	74	20	77	45	0	5	49	1.24
32672059--32672083	12	2.1	12	100	0	50	16	20	16	48	1.82
32675839--32675863	13	1.9	13	100	0	50	32	4	24	40	1.73
32676954--32677112	43	3.7	43	80	7	189	25	18	25	30	1.98
32684618--32684664	22	2.1	22	92	0	76	55	2	12	29	1.49
32688834--32689092	122	2.1	122	78	7	283	28	27	16	27	1.97
32691478--32691520	20	2.2	20	86	0	59	46	4	0	48	1.22
32692503--32692553	15	3.3	15	70	20	50	52	9	0	37	1.34
32692502--32692567	33	2.0	32	88	2	96	51	10	1	36	1.46
32706282--32706829	273	2.0	274	90	1	875	33	19	14	32	1.92
32710279--32710402	46	2.8	45	90	8	191	28	22	15	33	1.94
32710364--32710577	37	5.8	37	94	0	356	27	21	13	37	1.91
32718019--32718058	20	2.0	20	90	9	64	50	15	12	22	1.77
32734001--32734417	208	2.0	208	100	0	834	29	19	18	32	1.96
32735341--32735416	37	2.1	36	83	11	93	40	2	2	53	1.28
32736198--32736248	25	2.0	25	100	0	102	37	11	27	23	1.90
32747370--32747394	11	2.3	11	100	0	50	32	0	0	68	0.90
32747696--32747739	23	1.9	22	82	17	54	36	25	0	38	1.56
32747786--32747872	45	1.9	45	92	0	147	34	19	16	29	1.93
32747872--32748068	51	3.9	50	75	9	202	30	26	16	25	1.97
32747881--32748065	101	1.8	101	89	3	291	31	25	16	25	1.96
32748930--32748989	30	2.0	31	86	3	86	40	0	40	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32750650--32750690	19	2.2	19	86	0	55	36	17	24	21	1.94
32750974--32751044	37	1.9	37	81	16	85	40	2	0	56	1.14
32751234--32751268	14	2.5	14	95	0	61	57	0	25	17	1.40
32754606--32754664	9	6.4	9	79	11	66	40	25	10	23	1.86
32758730--32758762	11	3.1	11	86	8	50	0	15	0	84	0.61
32758729--32758771	15	2.9	15	89	0	68	2	16	0	81	0.79
32766290--32766357	21	3.1	21	82	4	64	41	38	1	19	1.60
32766327--32766423	21	4.6	21	70	19	67	45	30	2	21	1.63
32766381--32766429	7	7.0	7	80	0	62	44	36	0	18	1.50
32766381--32766434	14	3.9	14	90	0	81	46	33	0	20	1.51
32766551--32766612	30	2.0	31	81	9	74	33	4	0	61	1.17
32766740--32766885	40	3.7	40	85	1	195	28	23	19	28	1.98
32770365--32770444	29	2.8	29	80	0	88	38	10	5	46	1.59
32770560--32770640	39	2.1	37	84	4	99	34	7	4	53	1.51
32770681--32770754	34	2.1	35	80	7	80	35	8	2	54	1.44
32782110--32782149	2	20.0	2	100	0	80	50	50	0	0	1.00
32791601--32792007	69	5.9	69	80	0	357	38	21	18	21	1.93
32791599--32791997	138	2.9	137	81	2	431	38	21	18	22	1.93
32791601--32791993	207	1.9	207	79	2	439	39	21	17	21	1.93
32794344--32794417	36	2.1	36	92	0	121	41	13	20	24	1.88
32795922--32796016	45	2.1	45	92	0	163	26	18	24	30	1.98
32812043--32812155	25	4.6	25	78	1	111	21	26	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32819730--32819809	43	1.9	42	90	7	128	28	10	12	48	1.73
32821346--32821387	23	1.9	22	85	9	59	57	4	0	38	1.20
32824680--32824731	13	4.2	12	76	13	52	1	11	3	82	0.88
32842451--32842498	25	1.9	25	83	8	62	41	12	20	25	1.87
32846567--32846610	12	3.7	12	88	11	72	75	13	0	11	1.06
32846564--32846615	24	2.2	24	100	0	104	75	11	0	13	1.06
32847402--32847597	82	2.4	81	87	4	268	27	13	25	34	1.93
32847402--32847597	41	4.8	40	85	8	234	27	13	25	34	1.93
32854761--32854978	41	5.3	41	86	1	269	26	12	25	35	1.92
32857370--32857433	25	2.6	25	82	2	85	53	18	6	21	1.67
32857344--32857674	23	14.0	23	70	6	169	45	16	11	26	1.81
32857334--32857666	70	4.7	70	87	4	445	46	15	10	27	1.79
32858394--32858474	28	3.0	24	75	20	72	30	23	12	33	1.92
32858403--32858474	28	2.6	28	90	0	108	29	26	12	31	1.93
32864935--32865343	23	17.5	23	68	12	197	43	16	13	27	1.84
32864929--32865029	25	4.2	25	73	10	93	45	17	12	23	1.83
32865106--32865304	47	4.3	47	67	15	133	44	15	11	29	1.81
32864877--32865321	70	6.3	70	90	2	635	43	16	11	28	1.83
32866053--32866133	28	3.0	24	75	20	72	30	23	12	33	1.92
32866062--32866133	28	2.6	28	90	0	108	29	26	12	31	1.93
32868584--32868629	20	2.4	19	80	16	51	43	2	2	52	1.25
32870404--32870437	16	2.1	17	88	5	52	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32871650--32871704	22	2.3	22	78	12	56	49	7	14	29	1.70
32878463--32878497	18	1.9	18	88	0	52	8	2	48	40	1.49
32881811--32881933	49	2.5	49	80	9	135	30	19	26	23	1.98
32885341--32885378	18	2.1	19	85	5	51	31	10	10	47	1.72
32886139--32886181	23	1.9	23	86	13	63	13	6	41	37	1.72
32890479--32890531	26	2.1	25	92	3	88	73	3	0	22	0.99
32890704--32890742	16	2.5	15	84	15	53	58	0	0	41	0.98
32890704--32890742	7	5.1	7	85	14	51	58	0	0	41	0.98
32890777--32890821	20	2.4	18	79	13	54	57	0	6	35	1.25
32890780--32890818	20	2.0	20	89	0	60	56	0	7	35	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175