genome.fa.s16.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  151  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45739226--45739762	295	1.8	290	82	7	681	27	13	17	42	1.86
45749593--45749680	45	2.0	45	88	4	133	40	5	5	47	1.51
45754145--45754174	15	1.9	16	93	6	53	73	6	0	20	1.05
45754456--45754517	30	2.1	30	90	0	97	19	37	0	43	1.51
45755672--45755736	27	2.4	28	73	14	64	38	9	3	49	1.51
45761947--45761989	20	2.0	22	86	8	63	30	0	6	62	1.21
45762235--45762295	29	2.1	29	81	6	70	32	1	4	60	1.28
45762420--45762466	15	3.1	15	81	0	58	55	4	12	27	1.56
45765408--45765454	24	2.0	24	86	0	67	23	19	19	38	1.93
45765741--45765771	15	2.0	16	93	6	55	41	12	0	45	1.42
45767440--45767471	16	2.0	16	93	0	55	25	15	0	59	1.36
45767699--45767889	51	3.8	50	78	11	219	30	28	16	24	1.96
45767692--45767877	102	1.8	102	89	3	277	31	27	16	24	1.96
45785271--45785328	14	4.1	14	80	14	66	67	0	32	0	0.91
45785280--45785324	20	2.2	20	88	11	65	68	0	31	0	0.89
45785257--45785333	31	2.5	30	84	14	95	70	0	29	0	0.88
45785268--45785328	17	3.8	16	79	16	63	67	0	32	0	0.91
45785489--45785722	83	2.8	83	73	15	219	31	0	11	55	1.42
45785490--45785777	48	6.7	40	71	21	181	31	1	12	55	1.44
45785624--45785851	48	4.7	48	85	4	291	31	0	14	53	1.47
45785624--45785798	27	7.1	26	76	19	180	32	1	12	53	1.46
45785720--45785777	22	2.9	19	71	14	53	34	1	12	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45785488--45785680	19	9.5	19	71	18	122	32	1	11	54	1.44
45785844--45785940	33	3.1	33	67	24	84	32	0	11	55	1.35
45785839--45785960	60	2.0	60	87	3	174	30	0	13	54	1.45
45785994--45786075	38	2.2	38	100	0	164	54	4	2	37	1.35
45786112--45786153	16	2.7	15	85	7	57	38	2	2	57	1.25
45787779--45787858	6	13.3	6	90	5	126	35	33	30	1	1.66
45791179--45791223	22	2.1	21	91	4	72	0	33	2	64	1.06
45791289--45791364	27	2.8	28	90	4	113	19	38	25	17	1.93
45794271--45794296	13	2.0	13	100	0	52	30	23	23	23	1.99
45808763--45808815	23	2.4	22	76	20	56	9	18	1	69	1.25
45811472--45811535	29	2.3	27	81	8	74	62	0	4	32	1.16
45811951--45812002	24	2.2	24	89	0	77	53	7	1	36	1.41
45818245--45818278	16	2.1	16	88	0	50	50	14	17	17	1.79
45821079--45821119	21	2.0	21	90	0	64	29	21	29	19	1.98
45823025--45823058	16	2.1	16	88	0	50	50	14	17	17	1.79
45826971--45827010	20	2.0	20	85	0	53	25	10	15	50	1.74
45828218--45828251	11	3.1	11	100	0	68	44	8	11	35	1.72
45828506--45828543	18	2.1	18	95	0	67	50	21	5	23	1.69
45829138--45829171	16	2.1	16	94	0	59	52	0	35	11	1.38
45837642--45837712	24	3.0	23	76	14	72	42	21	32	4	1.72
45837648--45837795	66	2.2	66	83	2	181	39	23	31	4	1.75
45837801--45837861	30	2.0	30	83	0	77	36	21	32	9	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45837903--45837951	24	2.0	24	84	0	62	32	26	30	10	1.89
45841437--45841475	20	2.0	19	85	5	51	33	0	10	56	1.33
45847528--45847582	25	2.2	25	86	0	74	27	14	27	30	1.95
45851173--45851328	84	1.9	84	86	2	224	20	32	14	32	1.93
45851255--45851405	66	2.3	66	94	2	259	23	34	9	31	1.88
45854724--45854756	15	2.2	15	94	0	57	0	36	24	39	1.56
45857105--45857296	98	2.0	93	90	6	296	28	13	17	41	1.86
45861241--45861354	57	2.0	57	98	0	219	31	24	11	32	1.91
45865185--45865240	21	2.7	21	94	0	94	26	10	35	26	1.89
45870033--45870084	25	2.1	25	89	7	79	17	23	15	44	1.86
45871218--45871358	26	5.5	26	68	24	86	43	0	3	52	1.23
45871213--45871432	102	2.2	102	94	0	386	42	0	5	51	1.30
45871146--45871331	56	3.1	59	72	22	206	42	1	3	52	1.26
45871315--45871829	120	4.3	120	95	0	897	43	1	5	49	1.33
45871147--45871791	239	2.8	222	87	7	993	43	1	5	50	1.32
45871536--45871569	17	2.0	17	100	0	68	41	0	0	58	0.98
45871965--45872061	45	2.2	45	87	5	135	32	29	5	31	1.80
45872041--45872087	16	2.9	16	93	0	76	21	34	4	40	1.73
45872967--45873325	30	11.9	29	90	8	542	37	9	0	52	1.34
45872971--45873325	89	3.9	89	90	9	567	37	9	0	52	1.34
45875810--45875882	21	3.4	21	90	1	110	50	19	30	0	1.48
45878455--45878523	34	2.0	34	100	0	138	46	17	13	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45878514--45878540	14	1.9	14	100	0	54	66	3	7	22	1.33
45880939--45881540	204	3.0	204	87	1	843	36	18	22	22	1.95
45880939--45881576	68	9.4	68	84	2	710	35	18	22	23	1.96
45883789--45883857	21	3.3	21	70	8	59	44	21	20	13	1.85
45883799--45883916	42	2.8	41	78	10	121	44	17	20	16	1.86
45894275--45894321	21	2.2	22	92	3	78	21	19	38	21	1.94
45896895--45896925	4	7.8	4	100	0	62	51	0	0	48	1.00
45900481--45900527	18	2.3	21	79	17	55	34	4	6	55	1.45
45907451--45907532	21	3.9	20	73	17	67	51	1	0	47	1.08
45907476--45907532	21	2.7	21	82	15	73	50	0	0	49	1.00
45911767--45911801	14	2.5	13	86	13	52	60	0	2	37	1.12
45923087--45923142	24	2.3	24	90	6	87	33	12	21	32	1.91
45923463--45924142	44	15.6	44	75	5	556	31	21	23	23	1.98
45923460--45924142	131	5.2	130	84	3	649	31	21	22	23	1.98
45923507--45924142	87	7.3	87	80	4	645	31	21	22	24	1.98
45923591--45924142	175	3.2	175	80	4	528	31	21	22	24	1.98
45923681--45924167	131	3.7	129	88	2	656	31	21	22	24	1.98
45924857--45924888	15	2.1	15	94	0	55	3	9	0	87	0.64
45924857--45924889	8	4.2	8	84	7	50	3	9	0	87	0.63
45926086--45926410	107	3.1	106	88	2	440	29	18	18	33	1.95
45936287--45936359	36	2.0	36	89	10	114	20	23	19	36	1.95
45938672--45938701	15	2.0	15	93	0	51	33	50	0	16	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45943594--45944023	97	4.4	97	98	0	833	41	13	6	39	1.70
45944061--45944105	23	2.0	23	82	8	56	44	6	2	46	1.42
45944112--45944138	11	2.5	11	100	0	54	48	25	0	25	1.52
45947305--45947352	26	1.9	25	84	16	64	45	0	2	52	1.12
45947170--45947377	92	2.3	90	85	5	258	45	3	4	46	1.41
45947431--45947638	66	3.3	64	68	20	188	41	2	6	49	1.43
45947393--45947685	120	2.4	120	94	2	500	43	2	4	49	1.36
45947518--45947569	15	3.6	15	80	12	56	44	0	1	53	1.11
45947647--45947688	15	2.7	16	82	14	52	45	0	2	52	1.13
45947638--45947679	15	2.9	15	82	10	52	47	0	0	52	1.00
45947622--45947934	153	2.0	156	92	2	524	46	5	4	43	1.45
45948057--45948092	16	2.2	16	100	0	72	38	36	0	25	1.56
45949200--45949266	35	1.9	35	87	3	100	32	10	13	43	1.78
45956318--45956349	15	2.1	15	100	0	64	25	6	18	50	1.70
45961348--45961385	6	6.3	6	100	0	76	31	0	0	68	0.90
45964144--45964186	16	2.6	16	77	3	50	41	20	4	32	1.73
45965446--45965491	21	2.3	19	85	7	56	26	2	2	69	1.11
45986055--45986266	52	4.3	47	84	5	192	30	28	15	25	1.96
45986069--45986250	52	3.6	51	84	6	230	28	29	17	24	1.97
45992795--45992847	27	2.0	27	92	3	90	52	22	20	3	1.62
45993519--45993597	11	7.2	11	84	9	90	22	34	0	43	1.54
45993519--45993597	33	2.4	34	85	8	101	22	34	0	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45995409--45995451	18	2.4	18	84	0	50	18	25	9	46	1.79
45999055--45999470	126	3.3	126	89	0	607	27	19	18	33	1.96
46002196--46002265	30	2.3	31	80	7	81	32	18	4	44	1.69
46006967--46007154	59	3.2	59	66	11	150	41	3	3	51	1.35
46006956--46007244	119	2.4	120	93	2	492	43	2	4	50	1.34
46007076--46007131	15	3.5	18	75	24	63	42	0	0	57	0.99
46007030--46007212	56	3.1	58	66	23	146	42	2	6	49	1.39
46007196--46007230	18	2.0	17	88	5	52	45	0	0	54	0.99
46007184--46007458	147	1.9	149	95	1	500	47	2	3	46	1.35
46007343--46007377	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175