genome.fa.s16.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  136  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42063972--42064091	35	3.5	35	76	10	122	30	15	10	43	1.80
42064799--42064870	20	3.7	19	74	17	58	30	2	2	63	1.22
42068137--42068171	16	2.2	16	90	10	54	34	0	14	51	1.42
42074028--42074080	25	2.1	24	82	6	61	66	5	0	28	1.15
42082446--42082497	24	2.2	24	85	0	68	38	3	7	50	1.50
42098894--42098962	18	3.8	18	86	0	93	40	27	4	27	1.75
42100085--42101055	44	22.3	44	76	9	598	27	22	20	29	1.98
42099833--42100874	517	2.0	517	92	0	1726	27	22	19	30	1.98
42101983--42102038	28	2.0	28	92	0	94	28	16	26	28	1.97
42108461--42108606	37	4.0	37	93	1	242	24	21	16	36	1.94
42108570--42108929	52	7.6	46	81	14	410	28	21	15	34	1.94
42108675--42108765	39	2.4	39	94	1	157	29	20	16	32	1.95
42108634--42108916	91	3.0	91	88	7	440	29	21	15	33	1.94
42108571--42108916	189	1.8	190	92	0	595	28	21	15	34	1.94
42108570--42108929	98	3.7	98	89	5	554	28	21	15	34	1.94
42110964--42111016	3	17.7	3	80	7	63	64	3	1	30	1.22
42110954--42111015	27	2.3	27	86	8	81	64	4	1	29	1.23
42111353--42111431	33	2.4	33	97	0	149	29	18	24	27	1.98
42114805--42114856	24	2.2	24	85	0	68	44	3	19	32	1.69
42129929--42129989	30	2.1	30	84	9	81	62	0	6	31	1.21
42129956--42130006	20	2.6	19	84	9	66	62	0	3	33	1.13
42136443--42136513	17	3.9	17	73	10	52	67	1	1	29	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42136455--42136503	26	1.9	26	84	12	66	67	2	2	28	1.13
42145079--42145119	3	13.7	3	100	0	82	31	0	0	68	0.90
42145120--42145288	72	2.3	72	100	0	338	26	5	25	42	1.76
42145261--42145317	29	2.0	29	100	0	114	31	3	29	35	1.75
42145189--42145389	101	2.0	101	99	0	393	28	4	26	40	1.77
42149623--42149663	3	13.7	3	100	0	82	31	0	0	68	0.90
42149664--42149832	72	2.3	72	100	0	338	26	5	25	42	1.76
42149805--42149861	29	2.0	29	100	0	114	31	3	29	35	1.75
42149733--42149933	101	2.0	101	99	0	393	28	4	26	40	1.77
42151357--42151420	33	1.9	33	84	6	85	26	20	25	28	1.99
42155412--42155660	43	5.8	43	88	2	369	26	30	19	24	1.98
42155412--42155662	85	2.9	86	88	3	382	26	30	19	24	1.98
42160058--42160090	12	2.8	12	90	4	50	6	18	33	42	1.75
42166442--42166496	28	2.0	28	89	6	87	30	1	3	63	1.22
42178491--42179353	217	4.0	217	92	0	1433	30	20	22	27	1.98
42179149--42179483	173	1.9	173	95	0	600	28	20	23	27	1.99
42178498--42179525	44	23.7	42	71	16	432	29	20	22	27	1.98
42181067--42181106	19	2.1	19	95	0	71	35	2	5	57	1.34
42181071--42181121	19	2.5	19	84	12	57	35	3	3	56	1.36
42181124--42181180	29	2.0	27	90	6	87	29	1	3	64	1.20
42181691--42181743	24	2.2	24	96	0	97	13	49	3	33	1.60
42184743--42184842	49	2.0	49	100	0	200	44	6	18	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42185106--42185145	20	2.0	20	90	0	62	50	12	10	27	1.72
42185129--42185168	14	2.9	14	84	0	53	42	17	7	32	1.77
42185227--42185261	15	2.3	15	95	0	61	22	0	11	65	1.24
42186434--42186658	98	2.3	98	83	1	308	29	27	14	28	1.95
42186434--42186685	98	2.6	98	81	3	276	29	27	13	29	1.94
42196684--42196771	33	2.6	34	70	19	78	50	1	2	46	1.21
42197464--42197510	21	2.2	21	84	3	58	68	0	2	29	1.02
42197449--42197510	22	2.9	21	78	4	70	62	0	1	35	1.05
42199551--42199589	16	2.4	16	91	0	60	35	10	25	28	1.89
42199748--42199772	12	2.1	12	100	0	50	44	0	0	56	0.99
42203751--42203822	29	2.5	27	75	18	65	62	4	5	27	1.36
42206557--42206591	11	3.0	11	84	15	52	8	25	2	62	1.38
42211160--42211197	14	2.8	13	88	7	58	44	5	13	36	1.66
42211161--42211235	29	2.6	27	76	12	69	46	5	10	37	1.61
42211471--42211715	35	7.1	35	89	2	370	18	22	17	41	1.90
42211471--42211715	69	3.5	70	89	3	345	18	22	17	41	1.90
42211470--42211715	104	2.4	104	97	0	456	19	22	17	41	1.91
42214505--42214549	20	2.1	23	88	12	69	13	8	8	68	1.38
42220398--42220580	79	2.3	81	81	7	205	25	21	27	25	1.99
42220398--42220580	40	4.6	40	81	6	194	25	21	27	25	1.99
42228136--42228320	79	2.3	81	83	7	227	24	22	27	24	2.00
42228137--42228320	40	4.6	40	82	9	207	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42228189--42228353	79	2.1	79	83	6	201	26	21	27	24	1.99
42229759--42229935	35	5.1	35	86	4	225	19	22	16	41	1.90
42230032--42230312	35	8.1	35	85	2	370	42	16	22	19	1.89
42230029--42230312	104	2.7	104	91	1	444	42	15	21	19	1.89
42230033--42230314	139	2.0	138	87	2	413	42	15	21	19	1.89
42234819--42235029	35	6.1	35	90	1	318	40	18	22	18	1.91
42235265--42235337	29	2.5	29	70	16	69	38	10	5	45	1.63
42235303--42235340	14	2.8	13	88	7	58	36	13	5	44	1.66
42237634--42237667	16	2.1	16	88	0	50	20	14	20	44	1.87
42240171--42240195	9	2.8	9	100	0	50	24	36	20	20	1.95
42248062--42248119	24	2.4	24	97	0	107	34	12	24	29	1.91
42248405--42248822	46	9.0	46	79	8	432	27	18	25	29	1.98
42248554--42248730	90	2.0	89	84	1	228	24	19	26	29	1.99
42248405--42248815	141	2.9	135	82	6	439	27	18	25	29	1.98
42248405--42248840	97	4.6	98	78	10	434	27	17	25	29	1.98
42262018--42262094	14	5.0	15	70	20	52	41	14	9	35	1.77
42266885--42266986	45	2.3	44	84	6	134	41	17	18	22	1.90
42267189--42267275	40	2.2	40	83	4	104	41	19	6	32	1.78
42267905--42267965	24	2.5	23	80	15	61	49	4	0	45	1.23
42267913--42267981	35	2.0	35	85	5	95	47	5	0	46	1.26
42273554--42273614	24	2.5	23	80	15	61	49	4	0	45	1.23
42273562--42273641	35	2.3	35	85	8	103	50	5	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42275620--42275653	17	2.0	17	88	11	52	26	0	2	70	1.01
42276985--42277061	26	2.9	26	77	7	75	44	7	16	31	1.77
42296861--42297045	40	4.7	40	80	6	198	24	21	27	26	1.99
42296914--42297078	79	2.1	79	82	6	192	26	20	26	26	1.99
42299364--42299412	24	2.0	24	100	0	98	51	12	24	12	1.73
42300557--42300651	47	2.0	47	91	0	154	45	7	13	33	1.72
42306097--42306214	58	2.0	58	98	0	227	64	3	21	11	1.40
42311213--42311294	41	2.0	41	100	0	164	36	21	17	24	1.94
42315034--42315067	17	1.9	17	88	5	50	67	0	2	29	1.05
42321572--42321605	17	1.9	18	88	5	52	67	5	2	23	1.26
42321782--42321862	3	27.7	3	78	14	89	65	2	2	29	1.18
42331746--42331791	23	2.0	23	100	0	92	39	8	30	21	1.84
42336096--42336140	19	2.4	19	85	3	56	28	4	2	64	1.25
42345683--42346128	227	2.0	227	91	0	732	34	14	20	31	1.92
42350946--42351026	25	3.2	24	80	13	92	20	28	17	33	1.95
42357777--42357820	21	2.1	21	100	0	88	18	13	27	40	1.88
42361121--42361169	22	2.1	23	85	7	64	26	4	2	67	1.19
42364737--42364812	32	2.5	31	83	10	93	32	2	9	55	1.46
42364751--42364812	32	1.9	32	90	6	99	33	3	11	51	1.54
42365439--42365479	19	2.1	19	86	4	55	63	0	2	34	1.08
42365417--42365481	20	3.2	21	78	18	59	63	0	1	35	1.04
42365740--42365782	20	2.2	20	91	0	68	58	2	2	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42366358--42366419	32	1.9	32	83	6	81	29	3	4	62	1.31
42367081--42367141	22	2.7	22	87	2	77	49	1	1	47	1.21
42367117--42367156	16	2.5	16	91	0	62	47	2	7	42	1.45
42367167--42367345	59	2.9	60	90	7	261	39	5	9	45	1.58
42367412--42367455	24	1.9	24	90	9	74	61	2	0	36	1.09
42372358--42372438	28	2.8	28	82	16	87	67	2	3	25	1.19
42372358--42372438	29	2.8	28	80	14	85	67	2	3	25	1.19
42372472--42372519	17	2.7	18	80	9	62	58	2	6	33	1.35
42372507--42372540	9	3.7	9	88	4	50	61	0	0	38	0.96
42372613--42372661	21	2.4	21	82	3	55	71	6	4	18	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175