genome.fa.s16.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  148  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45068684--45068739	21	2.7	21	81	8	62	64	0	3	32	1.11
45071952--45072324	42	8.9	42	86	3	448	31	20	21	26	1.98
45072392--45072425	14	2.4	14	95	0	59	52	20	8	17	1.71
45072649--45072719	21	3.4	21	80	0	79	2	45	18	33	1.64
45078170--45078585	7	48.0	9	61	32	73	32	0	20	46	1.56
45078215--45078595	26	15.1	26	87	7	554	32	0	19	46	1.56
45078215--45078595	51	7.5	51	86	7	564	32	0	19	46	1.56
45078390--45078591	19	10.5	19	67	24	113	32	0	19	47	1.56
45078632--45078781	73	2.1	73	100	0	300	41	6	1	50	1.37
45078663--45078775	35	3.1	35	67	16	104	38	7	1	52	1.41
45078928--45078998	13	5.5	13	86	0	106	50	2	7	39	1.44
45078927--45078998	26	2.8	26	100	0	144	50	2	6	40	1.44
45079003--45079046	17	2.6	17	100	0	88	36	0	15	47	1.46
45082341--45082391	23	2.2	24	82	10	61	43	3	0	52	1.19
45082356--45082391	16	2.3	17	86	13	51	41	2	0	55	1.14
45083328--45083688	190	1.9	190	93	1	616	29	20	18	31	1.96
45083503--45083835	114	2.9	112	80	6	352	26	22	18	31	1.97
45086491--45086551	26	2.3	27	75	13	65	59	1	3	36	1.24
45091054--45091121	27	2.5	27	82	0	82	16	22	36	25	1.94
45094907--45094932	3	8.7	3	100	0	52	69	0	30	0	0.89
45102344--45102685	52	6.8	51	85	7	443	34	14	22	29	1.93
45102278--45102685	150	2.7	150	94	4	693	34	14	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45102298--45102702	98	4.1	98	89	3	534	34	13	22	29	1.93
45102666--45102885	37	6.0	37	94	1	363	37	15	21	25	1.93
45109006--45109168	61	2.7	58	82	9	166	41	1	3	53	1.27
45110249--45110290	21	2.0	21	86	4	59	38	9	16	35	1.81
45122144--45122199	24	2.3	24	78	9	60	67	5	3	23	1.27
45123838--45124746	44	19.8	43	69	12	363	30	18	16	35	1.93
45123832--45124334	139	3.7	135	87	2	478	29	18	17	34	1.94
45124034--45124334	139	2.2	139	93	0	521	29	17	18	34	1.94
45124149--45124564	95	4.4	94	74	8	331	30	18	16	35	1.93
45124212--45124611	191	2.1	191	88	0	586	31	17	16	35	1.92
45124212--45124611	96	4.2	95	82	0	476	31	17	16	35	1.92
45130977--45131302	42	7.7	42	77	4	271	25	17	21	35	1.95
45131683--45131733	21	2.4	21	90	0	75	1	45	17	35	1.60
45133525--45133628	45	2.3	44	80	11	113	42	18	7	31	1.78
45133737--45133815	39	2.0	38	85	9	106	51	21	11	15	1.74
45135137--45135163	12	2.2	12	100	0	54	40	0	0	59	0.98
45135698--45135755	13	4.2	13	77	12	53	48	39	0	12	1.40
45135696--45135745	13	3.6	13	81	10	55	44	42	0	14	1.44
45136854--45136905	23	2.3	23	100	0	104	17	11	23	48	1.79
45139249--45139442	92	2.1	92	88	5	286	44	4	4	46	1.41
45139475--45139526	17	3.2	17	76	18	56	40	5	1	51	1.37
45139577--45139616	16	2.5	17	76	15	50	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45139693--45139727	18	2.0	17	88	5	52	45	0	0	54	0.99
45139693--45139734	17	2.5	17	85	14	52	45	0	0	54	0.99
45139681--45139950	143	1.9	146	93	5	476	47	2	3	46	1.34
45139836--45139870	18	2.0	17	88	5	52	45	0	0	54	0.99
45140031--45140125	45	2.1	45	88	1	138	32	27	5	34	1.79
45140104--45140136	16	2.1	16	94	0	57	30	36	0	33	1.58
45140117--45140159	21	2.0	21	95	0	77	34	37	0	27	1.57
45140466--45141133	114	5.9	113	82	2	712	28	22	16	32	1.96
45140466--45141111	228	2.8	226	86	2	837	28	22	16	32	1.96
45140479--45141133	342	1.9	342	82	3	818	28	23	16	31	1.96
45149937--45150042	37	2.8	38	77	16	105	50	0	13	34	1.47
45150411--45150459	20	2.6	17	77	22	53	59	2	4	34	1.28
45150725--45150763	3	13.0	3	88	0	60	66	0	2	30	1.05
45150864--45150931	3	22.3	3	73	8	57	61	7	0	30	1.23
45151640--45151681	19	2.2	19	86	0	57	7	2	11	78	1.04
45152257--45152298	22	2.0	21	90	4	66	57	0	2	40	1.12
45152258--45152304	17	2.8	17	75	18	53	55	0	2	42	1.12
45162050--45162089	3	13.3	3	89	0	62	32	2	2	62	1.22
45164617--45164645	15	2.0	15	93	6	51	68	0	0	31	0.89
45167009--45167044	18	2.0	18	88	0	54	33	19	2	44	1.65
45167067--45167100	17	2.1	16	88	5	50	73	2	2	20	1.09
45183959--45184024	9	7.4	9	71	20	50	37	4	1	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45184216--45184318	49	2.2	48	81	6	113	39	10	1	47	1.49
45185748--45185785	3	12.7	3	100	0	76	65	0	0	34	0.93
45186096--45186142	24	2.0	23	84	16	60	44	2	2	51	1.25
45190578--45190633	28	2.0	29	93	6	98	33	3	7	55	1.45
45194738--45194767	14	2.1	14	100	0	60	0	20	0	80	0.72
45202409--45202476	3	23.0	3	78	14	70	30	1	4	63	1.23
45214332--45214356	6	4.2	6	100	0	50	16	0	36	48	1.46
45216266--45216311	18	2.6	18	89	6	67	58	2	0	39	1.10
45216266--45216338	24	3.3	24	72	21	86	56	4	1	38	1.27
45218740--45218796	28	2.1	28	90	3	89	29	7	26	36	1.83
45222134--45222222	30	3.1	30	81	14	107	26	24	5	42	1.77
45222134--45222222	25	3.1	30	79	15	107	26	24	5	42	1.77
45222144--45222190	15	3.1	15	70	11	51	27	23	8	40	1.83
45226798--45226886	30	3.1	30	81	14	107	26	23	6	42	1.79
45226798--45226886	25	3.1	30	79	15	107	26	23	6	42	1.79
45226808--45226854	15	3.1	15	70	11	51	27	23	8	40	1.83
45229745--45229770	11	2.4	11	100	0	52	50	7	23	19	1.73
45232750--45232785	18	2.1	18	89	5	56	50	19	0	30	1.48
45232738--45232838	24	4.3	23	80	9	114	47	24	0	27	1.52
45232761--45233637	23	33.1	27	76	19	627	47	23	0	28	1.53
45233100--45233168	33	2.1	34	97	2	131	49	21	0	28	1.50
45232733--45233645	235	3.9	236	89	7	1232	46	24	0	28	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45233335--45233521	34	5.5	34	71	22	133	47	25	0	27	1.52
45236783--45236985	83	2.4	84	96	1	372	31	24	21	23	1.98
45236919--45237150	125	1.9	124	88	4	351	33	23	14	28	1.94
45236896--45237160	125	2.1	124	84	4	347	31	24	14	29	1.95
45243451--45243783	109	3.1	109	88	2	485	32	17	18	31	1.94
45246032--45246229	41	4.6	42	74	10	161	27	21	22	27	1.99
45245978--45246321	130	2.6	132	85	5	440	24	20	22	33	1.97
45257977--45258270	105	2.8	106	86	3	423	35	17	17	30	1.93
45259016--45259046	16	1.9	16	93	0	53	64	3	0	32	1.09
45259511--45259535	12	2.1	12	100	0	50	92	0	8	0	0.40
45261947--45262123	64	2.8	64	88	6	238	32	7	17	41	1.78
45262233--45262351	41	2.9	41	94	0	211	29	20	29	21	1.98
45263644--45263813	91	1.9	91	87	1	252	42	13	12	31	1.81
45264226--45264294	33	2.1	33	100	0	138	40	26	7	26	1.81
45267324--45267369	22	2.1	22	84	15	60	43	19	6	30	1.76
45270751--45270781	15	2.1	15	100	0	62	41	6	19	32	1.77
45272923--45273000	36	2.1	36	88	2	111	43	6	10	39	1.64
45272932--45273004	36	2.0	36	97	0	137	42	6	8	42	1.61
45274233--45274278	18	2.5	19	86	13	62	32	30	0	36	1.58
45277971--45278163	50	3.7	50	86	4	242	25	22	29	22	1.99
45278027--45278202	50	3.6	48	82	3	156	28	23	26	21	1.99
45285227--45285419	50	3.8	50	87	0	269	21	30	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45288932--45288960	3	9.7	3	100	0	58	34	0	0	65	0.93
45291375--45291429	23	2.4	24	84	9	78	47	0	0	52	1.00
45297874--45297934	23	2.5	23	89	7	86	49	0	0	50	1.00
45297898--45297937	10	3.7	10	81	18	53	45	0	0	55	0.99
45297890--45297931	14	3.4	13	78	21	54	50	0	0	50	1.00
45297890--45297935	23	2.0	23	100	0	92	47	0	0	52	1.00
45301083--45301155	31	2.4	31	86	2	94	50	17	9	21	1.74
45303649--45303681	17	1.9	17	93	0	57	27	6	3	63	1.32
45303654--45303689	17	2.1	17	89	5	54	27	8	5	58	1.50
45303820--45303848	13	2.1	14	93	6	51	75	0	6	17	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175