genome.fa.s16.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  57  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16616233--16616264	17	2.0	17	88	11	50	21	6	34	37	1.79
16617473--16617518	23	1.9	25	86	8	69	73	0	13	13	1.09
16618815--16619576	89	8.6	89	90	1	935	30	16	24	28	1.96
16619554--16619590	14	2.6	14	95	0	65	51	8	24	16	1.71
16619061--16619582	222	2.3	221	87	2	616	31	15	25	27	1.96
16620514--16620560	8	5.5	8	82	12	58	10	4	2	82	0.88
16623244--16623494	29	8.6	29	78	8	181	22	26	12	38	1.90
16623244--16623465	29	7.6	29	81	7	182	22	26	12	38	1.90
16623331--16623523	58	3.3	58	72	6	165	22	25	12	38	1.90
16623244--16623523	116	2.4	116	86	2	373	22	26	12	38	1.90
16623331--16623516	29	6.4	29	82	2	124	22	26	12	38	1.90
16640949--16641138	79	2.4	81	85	7	246	25	28	21	24	1.99
16640949--16641133	40	4.7	40	80	7	216	25	28	22	24	1.99
16665651--16665828	27	6.6	27	83	5	180	28	28	16	26	1.97
16665672--16665827	82	1.9	81	86	3	224	28	28	16	26	1.97
16668655--16668760	21	5.1	21	63	13	67	32	16	33	17	1.93
16668673--16668737	20	3.2	20	76	20	80	36	18	32	12	1.88
16668629--16668796	41	4.1	41	83	5	189	35	17	29	18	1.94
16670884--16671062	80	2.2	80	83	6	213	25	26	21	25	2.00
16670898--16671062	40	4.1	40	82	6	192	25	27	22	24	2.00
16680944--16680982	12	3.2	12	85	0	51	20	23	5	51	1.67
16688647--16688693	24	2.0	24	83	8	60	17	34	0	48	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16691576--16691787	75	2.8	76	92	2	347	30	28	19	21	1.98
16691687--16691917	102	2.3	102	94	1	401	30	28	20	20	1.98
16691939--16692108	51	3.3	51	82	8	211	31	27	15	25	1.96
16696539--16696580	20	2.1	20	90	0	66	23	21	26	28	1.99
16697366--16697414	21	2.3	21	75	0	53	12	8	2	77	1.07
16699572--16699612	16	2.6	16	85	11	50	34	0	36	29	1.58
16705098--16705526	27	15.9	27	80	4	377	20	17	20	42	1.89
16705099--16705474	54	7.0	54	82	6	422	20	18	19	41	1.90
16705099--16705474	81	4.6	81	86	3	488	20	18	19	41	1.90
16705505--16705543	18	2.2	18	86	4	53	20	12	20	46	1.83
16718654--16718690	19	1.9	19	94	0	65	59	2	10	27	1.44
16722895--16722928	16	2.1	17	88	5	52	8	0	14	76	1.01
16723017--16723056	7	5.4	7	91	8	62	0	12	5	82	0.82
16723012--16723057	8	5.9	8	82	7	51	0	13	4	82	0.81
16723017--16723057	15	2.7	16	85	11	59	0	12	4	82	0.81
16726412--16726708	38	7.8	38	68	12	126	22	22	22	31	1.98
16726414--16726707	76	3.9	75	77	4	250	23	22	22	31	1.98
16726412--16726688	114	2.4	113	76	5	281	23	22	22	32	1.98
16738575--16738752	27	6.6	26	82	6	169	26	15	28	28	1.96
16738576--16738731	82	1.9	81	85	3	215	26	16	28	28	1.97
16738572--16738752	82	2.2	81	81	2	211	27	16	28	28	1.97
16738657--16738763	27	3.9	27	85	1	70	26	14	28	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16746563--16746739	27	6.6	27	82	5	180	27	15	28	28	1.96
16746564--16746718	82	1.9	80	85	5	213	27	16	28	28	1.97
16746560--16746739	82	2.2	81	81	3	211	27	16	27	28	1.97
16746644--16746750	27	3.9	27	85	1	70	26	14	28	30	1.95
16754492--16754660	26	6.6	27	78	8	158	28	15	28	27	1.96
16754493--16754636	78	1.9	77	84	7	193	28	15	27	27	1.97
16757286--16757433	57	2.6	58	73	7	140	31	18	18	31	1.95
16768720--16768845	28	4.5	28	95	1	209	26	13	28	31	1.94
16776786--16776911	28	4.5	28	95	1	209	26	13	28	31	1.94
16779973--16780220	137	1.8	138	86	2	365	41	7	6	44	1.57
16785135--16785359	40	5.7	40	84	5	260	25	27	22	25	2.00
16785137--16785352	119	1.8	120	84	7	296	25	26	21	26	2.00
16786484--16786603	56	2.1	56	98	0	231	22	23	9	45	1.81
16793077--16793299	119	1.9	120	83	6	292	25	27	22	24	2.00
16793056--16793299	40	6.1	39	83	8	262	25	27	22	25	2.00
16794427--16794602	56	3.1	56	99	0	343	22	23	9	44	1.81
16812789--16813256	40	11.7	40	95	0	821	31	20	26	22	1.98
16821677--16822092	40	10.7	40	90	6	676	31	20	26	22	1.98
16844580--16844757	27	6.6	26	82	6	160	27	15	28	28	1.96
16844581--16844736	82	1.9	81	84	3	206	27	15	28	28	1.96
16844608--16844757	55	2.8	54	83	4	167	27	15	28	28	1.96
16844577--16844757	82	2.2	81	80	2	202	27	15	28	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16844662--16844768	27	3.9	27	85	1	70	26	14	28	30	1.95
16850718--16850752	18	1.9	19	88	11	56	48	0	0	51	1.00
16851484--16851876	199	2.0	199	93	0	678	33	25	15	26	1.95
16856806--16857044	50	4.7	50	82	4	221	22	28	23	26	1.99
16865605--16865685	31	2.6	31	75	12	87	32	8	16	43	1.78
16875355--16875569	25	8.6	25	77	4	191	29	22	21	26	1.99
16875355--16875565	75	2.8	75	84	1	271	29	22	22	26	1.99
16875717--16875774	31	1.9	30	82	10	73	37	6	17	37	1.76
16882826--16882866	22	1.9	22	85	5	57	41	2	12	43	1.55
16883175--16883289	25	4.7	24	79	7	88	26	20	20	32	1.97
16883172--16883289	50	2.4	49	76	7	130	27	20	20	32	1.97
16885109--16885168	17	3.5	17	79	0	57	23	20	31	25	1.98
16886046--16886095	26	1.9	26	88	8	75	16	42	20	22	1.89
16887024--16887084	29	2.1	28	81	3	68	24	14	16	44	1.85
16887314--16887364	22	2.3	22	100	0	102	27	33	0	39	1.57
16887341--16887416	40	1.9	40	94	0	134	32	25	0	42	1.55
16887410--16887470	30	2.1	30	90	9	99	32	0	0	67	0.91
16888552--16888583	7	4.6	7	100	0	64	28	0	12	59	1.34
16889234--16889268	18	1.9	18	88	0	52	25	34	8	31	1.86
16889527--16889579	24	2.2	24	93	0	88	43	32	22	1	1.64
16889524--16889595	21	3.3	21	74	11	63	38	37	22	1	1.63
16889819--16892250	28	86.4	28	87	5	3166	50	23	0	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16889820--16892250	57	43.2	56	87	6	2830	50	23	0	24	1.52
16890219--16890259	18	2.3	18	95	0	73	53	21	0	24	1.46
16890237--16892250	29	71.3	29	87	4	2761	50	23	0	24	1.52
16890454--16891495	9	109.6	10	62	26	129	50	23	0	24	1.51
16892088--16892248	9	16.8	10	66	27	57	52	26	0	21	1.47
16892251--16892391	55	2.5	54	77	11	140	37	9	7	44	1.67
16892374--16892398	10	2.5	10	100	0	50	44	8	0	48	1.32
16895479--16895817	126	2.7	126	92	0	572	33	20	14	30	1.93
16901268--16901333	24	2.7	25	75	11	64	43	6	18	31	1.74
16901870--16901894	13	1.9	13	100	0	50	20	24	40	16	1.91
16902861--16902959	37	2.6	39	76	16	102	52	5	3	39	1.39
16904562--16904592	16	1.9	16	93	0	53	70	9	9	9	1.33
16921204--16921499	148	2.0	148	97	0	565	44	17	13	24	1.84
16926512--16926560	17	2.6	19	87	12	66	73	2	20	4	1.10
16929960--16930022	21	3.0	21	85	2	81	28	3	34	33	1.73
16933064--16933148	39	2.2	39	82	0	98	30	5	20	43	1.75
16937839--16937895	27	2.1	27	100	0	114	17	24	21	36	1.94
16939000--16939034	18	1.9	18	94	0	61	28	14	11	45	1.79
16943400--16943459	22	2.7	22	97	2	111	28	10	31	30	1.89
16958216--16958249	16	2.1	17	88	5	52	20	11	14	52	1.73
16958216--16958267	26	2.0	26	92	0	86	21	11	13	53	1.70
16959211--16959304	28	3.3	28	90	1	143	31	26	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16961363--16961417	21	2.6	21	75	16	60	21	23	30	23	1.99
16964972--16965152	49	3.7	49	90	1	281	28	17	22	32	1.96
16964972--16965152	100	1.8	98	91	4	301	28	17	22	32	1.96
16971667--16971847	46	3.9	46	94	0	317	28	26	8	35	1.86
16973071--16973118	17	2.9	17	90	3	71	50	20	2	27	1.60
16973897--16973937	21	2.0	20	85	4	55	46	12	7	34	1.69
16982107--16982150	23	1.9	23	86	9	63	47	2	11	38	1.52
16983826--16984018	52	3.7	52	74	3	181	22	16	27	33	1.95
16994953--16994985	10	3.3	10	95	0	57	51	0	6	42	1.26
16995189--16995218	13	2.3	13	94	0	51	30	6	3	60	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175