genome.fa.s16.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  106  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33775650--33775716	34	1.9	35	90	3	109	31	8	13	46	1.74
33775644--33775720	14	5.0	15	71	20	52	33	9	14	42	1.77
33778267--33778306	3	13.3	3	100	0	80	32	0	0	67	0.91
33784259--33784431	84	2.1	84	97	0	328	35	7	25	31	1.84
33787503--33787569	34	2.0	34	85	11	93	34	10	16	38	1.83
33787506--33787581	34	2.2	34	81	9	84	35	11	15	36	1.85
33787628--33787656	6	4.8	6	100	0	58	65	17	0	17	1.27
33790317--33790364	20	2.4	19	76	10	51	31	22	14	31	1.94
33797924--33797953	11	2.6	11	94	5	51	56	6	0	36	1.26
33808914--33808968	16	3.4	16	87	0	83	38	5	25	30	1.79
33809207--33809300	20	4.3	20	73	22	75	57	2	1	39	1.18
33810969--33811013	23	2.0	23	82	8	56	40	26	0	33	1.57
33810991--33811156	23	7.3	23	67	12	65	41	23	3	31	1.72
33810962--33811225	138	1.9	138	94	1	467	41	22	3	32	1.72
33813796--33813857	28	2.2	28	85	0	79	27	24	12	35	1.92
33814007--33814149	51	2.8	51	80	0	142	25	27	11	35	1.90
33815471--33815495	2	12.5	2	100	0	50	48	52	0	0	1.00
33818418--33818500	21	4.0	21	72	14	66	15	19	18	46	1.83
33823491--33823614	62	2.0	62	100	0	248	32	17	20	29	1.96
33824133--33824189	28	2.0	28	93	0	96	21	21	10	47	1.80
33824893--33824956	31	2.1	31	100	0	128	15	3	29	51	1.59
33829695--33829754	28	2.1	28	82	11	70	58	1	6	33	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33841147--33841377	102	2.3	102	96	0	417	19	20	28	31	1.97
33841252--33841333	27	2.7	31	83	10	100	17	21	29	31	1.96
33841314--33841454	42	3.6	41	74	16	145	24	19	26	28	1.99
33841277--33841455	75	2.4	75	89	0	268	24	19	26	29	1.99
33844930--33845085	78	2.0	78	96	0	285	24	11	11	52	1.70
33846843--33846888	21	2.2	21	88	0	65	21	28	17	32	1.96
33847707--33847768	32	1.9	33	93	3	108	46	22	1	29	1.61
33847707--33847778	32	2.2	32	83	9	101	48	22	1	27	1.59
33853334--33853359	11	2.4	11	100	0	52	53	0	0	46	1.00
33858248--33858533	67	4.3	66	76	7	231	33	17	25	23	1.96
33864289--33864345	29	1.9	30	86	10	82	50	3	21	24	1.64
33864813--33864924	43	2.6	43	78	7	118	26	17	28	26	1.98
33870199--33870250	3	17.0	3	88	4	68	59	0	0	40	0.97
33875617--33875646	14	2.1	14	93	0	51	36	16	20	26	1.93
33876014--33876054	19	2.2	18	87	12	57	80	12	7	0	0.90
33886312--33886378	20	3.3	20	93	0	107	49	0	11	38	1.40
33890908--33890940	16	2.1	16	100	0	66	6	27	30	36	1.81
33898661--33898699	18	2.3	18	86	8	55	43	12	5	38	1.65
33898856--33898886	15	2.1	15	100	0	62	22	32	6	38	1.80
33900466--33900495	15	2.0	15	93	0	51	23	46	6	23	1.75
33901432--33901462	15	2.1	15	100	0	62	22	32	6	38	1.80
33903371--33903395	9	2.8	9	100	0	50	12	12	24	52	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33914127--33914157	16	1.9	16	93	0	53	19	38	0	41	1.51
33921120--33921220	51	2.0	52	88	2	150	22	16	24	35	1.95
33921283--33921314	16	2.0	16	93	0	55	40	12	15	31	1.85
33927480--33927556	14	5.0	15	71	20	52	42	14	9	33	1.77
33927496--33927535	20	2.0	20	90	0	62	50	12	10	27	1.72
33927484--33927550	34	1.9	35	90	3	109	46	13	8	31	1.74
33930065--33930309	114	2.1	114	93	0	409	41	8	13	35	1.76
33930203--33930382	94	1.9	94	88	4	270	40	10	12	37	1.76
33930828--33930894	32	2.1	32	100	0	134	34	11	28	25	1.91
33941870--33941902	6	5.7	6	92	7	59	72	0	0	27	0.85
33941870--33941902	11	2.8	12	90	9	59	72	0	0	27	0.85
33941866--33941903	17	2.3	16	91	8	67	76	0	0	23	0.79
33942543--33942636	47	2.0	47	91	2	154	31	28	7	31	1.85
33943774--33943798	13	1.9	13	100	0	50	32	4	0	64	1.12
33947190--33947215	4	6.5	4	100	0	52	26	23	0	50	1.50
33948041--33948065	8	3.1	8	100	0	50	88	0	0	12	0.53
33948087--33948133	6	8.2	6	81	9	62	78	0	21	0	0.75
33949956--33950017	24	2.6	24	92	0	106	38	11	24	25	1.88
33950343--33950866	44	11.8	43	73	8	307	30	18	22	28	1.97
33950345--33950863	88	5.8	88	73	6	364	29	18	22	28	1.97
33950345--33950911	133	4.2	134	75	7	402	29	18	23	28	1.98
33950701--33950953	44	5.9	42	75	9	165	28	22	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33952406--33952444	3	13.3	3	83	5	53	30	2	2	64	1.21
33952517--33952541	13	1.9	13	100	0	50	36	0	0	64	0.94
33959224--33959319	45	2.1	46	84	7	124	45	3	8	42	1.50
33962786--33963099	162	1.9	163	95	0	567	34	16	13	35	1.88
33964946--33964981	18	2.0	18	94	0	63	8	38	0	52	1.32
33974364--33974526	83	2.0	82	84	3	211	38	6	12	43	1.67
33977673--33977697	13	1.9	13	100	0	50	36	0	0	64	0.94
33981892--33981926	18	2.0	18	94	5	63	11	25	45	17	1.81
33987192--33987303	34	3.3	32	80	7	107	46	10	10	32	1.73
33991337--33991384	26	1.9	26	83	8	64	50	8	10	31	1.66
33991570--33991766	99	2.0	99	100	0	394	41	18	14	25	1.88
33995465--33995532	31	2.2	31	81	5	75	36	5	8	48	1.59
33999186--33999232	23	2.0	23	100	0	94	19	12	8	59	1.58
34000193--34000222	14	2.1	14	100	0	60	43	0	13	43	1.43
34005844--34005879	18	2.0	18	89	10	56	33	11	2	52	1.51
34008256--34008288	6	5.7	6	89	7	50	0	45	0	54	0.99
34008256--34008288	11	2.8	12	86	9	50	0	45	0	54	0.99
34008254--34008288	17	2.1	17	88	0	52	0	48	0	51	1.00
34008716--34008757	14	2.7	15	82	14	50	19	4	4	71	1.22
34008723--34008795	14	5.2	14	69	11	51	20	5	6	67	1.35
34008879--34008945	3	22.3	3	73	11	57	28	1	4	65	1.21
34008922--34008946	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34010441--34010492	26	2.1	23	86	10	68	13	3	7	75	1.17
34010448--34010511	26	2.5	26	82	5	67	17	6	6	70	1.29
34012631--34012827	105	1.9	105	80	8	231	31	17	24	25	1.97
34017188--34017230	21	2.0	21	90	0	68	16	16	20	46	1.84
34022215--34022251	17	2.2	17	95	0	65	51	18	0	29	1.47
34022808--34022892	42	2.0	42	100	0	170	42	2	4	50	1.36
34023528--34023605	30	2.6	30	85	6	104	51	2	5	41	1.38
34026511--34026588	33	2.5	30	82	12	86	34	3	15	46	1.64
34026682--34026836	43	3.6	44	76	7	138	25	17	26	30	1.97
34043368--34043415	18	2.7	18	84	12	64	70	2	0	27	0.98
34044827--34045036	100	2.1	99	90	3	325	44	14	16	24	1.85
34045048--34045478	109	4.0	109	82	7	536	36	15	13	33	1.87
34050645--34050757	32	3.5	32	87	6	156	44	9	8	37	1.69
34051863--34051897	13	2.7	13	100	0	70	8	22	37	31	1.85
34052634--34052728	41	2.3	40	91	5	163	36	13	28	21	1.91
34052660--34052726	21	3.2	21	73	12	75	34	13	31	20	1.92
34052644--34052706	20	3.1	20	73	13	74	36	11	31	20	1.88
34052651--34052715	20	3.2	20	75	12	78	40	12	27	20	1.88
34054891--34054915	12	2.1	12	100	0	50	76	0	16	8	1.02
34057785--34057809	7	3.6	7	100	0	50	60	0	12	28	1.32
34063682--34063737	21	2.8	20	89	5	78	67	3	1	26	1.16
34063703--34063946	10	25.6	9	68	19	97	61	3	2	33	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34063831--34063902	21	3.5	21	76	14	71	56	2	2	37	1.28
34063873--34063945	37	1.9	38	89	8	114	63	4	2	30	1.27
34063844--34063937	21	4.8	20	75	16	81	60	3	2	34	1.24
34064439--34064470	5	6.4	5	100	0	64	40	18	0	40	1.51
34067854--34067926	30	2.4	30	93	0	119	24	13	17	43	1.86
34068106--34068198	46	2.0	46	97	0	177	40	17	0	41	1.49
34068915--34069339	109	3.9	109	90	1	658	33	18	17	30	1.95
34068915--34069339	217	2.0	216	90	1	663	33	18	17	30	1.95
34070769--34070895	66	1.9	67	87	4	186	25	18	18	36	1.94
34070867--34071469	50	12.1	50	68	5	263	25	22	22	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175