genome.fa.s16.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  111  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35083880--35083927	22	2.2	21	82	14	53	50	4	10	35	1.56
35088269--35088509	114	2.1	113	83	0	293	21	21	26	29	1.99
35088177--35088828	319	2.0	319	98	0	1277	25	21	26	26	1.99
35088588--35088931	114	3.0	114	86	0	483	23	21	26	28	1.99
35089398--35089474	14	5.6	14	76	6	59	22	0	41	36	1.54
35089410--35089448	12	3.1	12	88	7	51	17	0	51	30	1.46
35089409--35089448	7	6.0	7	85	11	57	17	0	52	30	1.45
35089410--35089464	19	2.7	20	83	11	67	21	0	47	30	1.51
35089410--35089463	26	2.1	26	82	0	63	22	0	46	31	1.52
35089542--35089581	14	2.9	14	88	0	62	20	0	50	30	1.49
35089548--35089581	7	4.9	7	92	0	59	17	0	52	29	1.45
35089593--35089818	83	2.7	84	86	6	305	29	2	23	44	1.67
35089655--35089818	88	1.9	89	90	1	267	28	3	26	42	1.70
35089867--35089920	21	2.6	21	72	21	51	50	1	5	42	1.36
35089915--35089955	9	4.4	9	90	6	64	63	0	7	29	1.21
35089915--35089957	19	2.3	19	95	0	77	62	0	6	30	1.21
35089943--35089982	20	2.0	20	90	5	62	77	0	0	22	0.77
35089951--35089992	20	2.2	19	83	8	50	80	0	2	16	0.81
35090144--35090895	199	3.8	199	92	0	1193	32	17	23	26	1.97
35091024--35091050	2	13.5	2	100	0	54	0	48	0	51	1.00
35093457--35093503	21	2.2	21	84	0	58	40	12	0	46	1.42
35093764--35093818	28	2.0	28	85	0	74	25	21	12	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35094116--35094289	46	3.6	46	71	15	136	47	17	0	34	1.52
35094214--35094297	17	4.7	17	70	21	55	48	15	0	35	1.45
35094241--35094297	9	6.8	8	76	7	51	49	15	0	35	1.45
35094245--35094294	25	2.0	26	84	4	66	48	18	0	34	1.48
35094214--35094300	34	2.4	36	86	7	115	47	14	0	37	1.45
35094241--35094300	17	3.5	17	80	8	77	46	15	0	38	1.45
35094385--35094455	17	4.2	17	72	13	56	45	14	1	39	1.53
35094392--35094455	25	2.5	26	87	2	94	43	14	1	40	1.54
35094960--35095052	43	2.2	43	90	3	143	24	21	32	21	1.98
35098042--35098212	63	2.7	63	80	3	184	28	6	28	36	1.82
35099019--35099077	24	2.5	24	100	0	118	32	32	10	25	1.89
35102847--35102887	9	4.7	9	82	11	50	31	0	0	68	0.90
35104412--35104436	2	12.5	2	100	0	50	52	0	0	48	1.00
35109154--35109244	30	3.0	29	82	7	101	37	21	1	39	1.61
35109730--35109765	15	2.4	15	100	0	72	16	44	25	13	1.85
35111306--35111345	21	1.9	21	94	0	71	30	37	17	15	1.90
35114591--35115104	126	4.1	126	90	2	755	27	16	17	38	1.91
35115179--35115277	34	2.9	33	88	4	135	44	18	0	37	1.50
35115328--35115394	21	3.2	21	69	0	62	46	26	1	25	1.62
35115319--35115409	42	2.1	42	84	6	121	47	27	2	23	1.63
35123700--35123923	40	5.7	40	86	7	273	24	22	27	25	2.00
35123700--35123923	79	2.8	80	85	8	287	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35123753--35123956	79	2.6	79	84	5	227	25	21	27	25	1.99
35131720--35131943	40	5.7	40	85	7	264	24	23	27	24	2.00
35131720--35131943	79	2.8	80	84	6	285	24	23	27	24	2.00
35131773--35131976	79	2.6	79	83	5	218	25	22	27	24	2.00
35133571--35133646	37	2.1	37	100	0	152	36	5	15	42	1.70
35133579--35133639	20	3.2	20	65	21	58	36	6	18	39	1.76
35156509--35156548	21	2.0	21	90	5	64	37	30	5	27	1.78
35160135--35160231	46	2.1	46	100	0	194	28	11	16	43	1.83
35160579--35160608	15	2.0	15	93	0	51	40	0	3	56	1.16
35160525--35160614	26	3.5	26	68	19	64	43	0	4	52	1.21
35160545--35160630	26	3.3	24	71	17	73	45	2	3	48	1.32
35160742--35160792	16	3.2	16	85	0	66	25	21	7	45	1.79
35173687--35173733	24	2.0	23	87	4	67	19	36	0	44	1.51
35175465--35175756	114	2.6	112	83	6	333	26	23	25	24	2.00
35175465--35175793	112	2.9	112	82	6	355	27	22	25	24	2.00
35175692--35175929	73	3.3	73	80	1	273	28	19	23	27	1.99
35176057--35176081	10	2.5	10	100	0	50	56	0	8	36	1.29
35176074--35176104	12	2.6	12	100	0	62	45	0	6	48	1.28
35176274--35176341	22	3.1	21	77	8	73	16	5	41	36	1.72
35176454--35176511	14	4.2	13	82	10	62	13	3	34	48	1.60
35176516--35176584	14	4.9	14	73	7	50	21	0	30	47	1.51
35176516--35176584	28	2.5	28	83	4	77	21	0	30	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35176565--35176805	103	2.3	102	88	5	335	26	4	28	41	1.74
35176595--35176806	103	2.1	103	92	1	354	27	4	29	38	1.77
35176627--35176830	103	2.0	102	80	5	234	30	4	28	36	1.77
35181205--35181473	9	28.4	9	74	12	191	48	15	2	33	1.58
35184879--35184970	21	4.4	21	87	0	130	32	18	44	4	1.69
35186458--35186513	24	2.3	25	78	9	62	64	1	1	32	1.14
35186557--35186615	27	2.2	27	84	6	75	66	3	1	28	1.18
35186817--35186841	12	2.1	12	100	0	50	52	0	0	48	1.00
35193170--35193249	18	4.4	18	68	20	58	50	0	6	43	1.27
35209936--35210022	25	3.4	25	78	10	77	57	6	6	28	1.51
35210014--35210054	20	2.0	21	85	4	57	56	4	0	39	1.21
35211539--35211586	25	1.9	25	100	0	96	33	8	0	58	1.28
35213560--35213641	26	3.2	26	66	27	75	23	13	29	34	1.93
35213502--35213641	50	2.8	51	90	4	221	23	15	29	31	1.95
35216401--35216442	21	2.0	21	81	9	50	21	14	2	61	1.43
35217697--35217735	16	2.3	16	86	8	51	66	0	0	33	0.92
35222560--35222595	15	2.4	15	100	0	72	19	19	5	55	1.62
35229427--35229487	25	2.4	25	78	10	63	37	3	1	57	1.25
35231241--35231408	30	5.7	30	76	12	152	35	23	2	38	1.70
35231259--35231395	57	2.3	60	83	6	174	36	21	2	39	1.68
35231890--35231983	7	13.3	7	72	13	50	75	0	22	2	0.91
35231888--35231939	10	5.4	10	84	9	54	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35231890--35231978	13	6.9	13	70	10	58	75	0	23	1	0.87
35231947--35231986	13	3.1	12	86	13	53	85	0	10	5	0.75
35232257--35232320	11	5.5	11	77	14	65	81	0	18	0	0.70
35232257--35232312	18	3.0	18	85	10	76	82	0	17	0	0.68
35232257--35232321	20	3.3	20	85	6	80	80	0	20	0	0.72
35232436--35232474	5	7.4	5	85	5	51	17	0	2	79	0.84
35232779--35232864	36	2.4	35	88	1	127	33	15	9	41	1.79
35232780--35232938	35	4.4	35	80	10	142	30	14	10	44	1.79
35232780--35232938	17	8.8	17	72	13	122	30	14	10	44	1.79
35233858--35233902	5	9.0	5	95	0	81	37	0	2	60	1.09
35234675--35234728	21	2.6	21	84	0	63	37	0	3	59	1.15
35241267--35241326	5	12.2	5	89	3	95	36	0	1	61	1.06
35242101--35242153	27	2.0	27	88	7	81	41	0	3	54	1.18
35244706--35244736	4	8.0	4	92	7	55	25	25	0	48	1.52
35248296--35248362	1	67.0	1	72	0	53	86	8	4	0	0.69
35248296--35248356	8	7.6	8	82	14	72	86	9	3	0	0.67
35248296--35248362	16	4.2	15	81	12	80	86	8	4	0	0.69
35249219--35250510	75	16.8	76	85	6	1298	27	16	20	35	1.94
35249247--35250510	151	8.2	152	85	6	1234	27	17	20	35	1.95
35250882--35250925	15	2.9	15	86	3	52	72	2	25	0	0.96
35251012--35251041	10	3.0	10	95	0	51	86	0	13	0	0.57
35251040--35251067	10	2.8	10	100	0	56	64	0	35	0	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35251165--35251206	18	2.3	18	87	0	57	38	45	16	0	1.48
35251386--35251436	7	7.9	7	78	12	56	82	0	17	0	0.67
35251384--35251446	11	5.9	11	80	16	62	80	0	19	0	0.70
35251387--35251445	20	3.2	18	81	11	75	81	0	18	0	0.69
35251384--35251439	25	2.2	25	87	9	87	83	0	16	0	0.64
35251383--35251438	20	2.8	20	86	2	76	82	0	17	0	0.68
35251388--35251446	18	3.3	18	79	13	68	79	0	20	0	0.73
35251561--35251605	5	8.4	5	83	9	54	20	0	2	77	0.87
35251561--35251605	11	4.2	10	78	15	54	20	0	2	77	0.87
35251912--35251995	17	4.8	17	80	8	96	32	15	10	41	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175