genome.fa.s16.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  140  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43261192--43261600	9	47.9	9	69	16	246	31	2	21	45	1.64
43261223--43261600	34	11.9	33	72	16	268	30	2	21	45	1.64
43261175--43261251	25	3.3	25	69	23	76	35	3	15	45	1.65
43261192--43261362	68	2.5	68	77	9	202	30	2	19	46	1.64
43261221--43261600	25	15.0	26	68	17	189	31	2	21	45	1.64
43261691--43261766	39	1.9	40	81	5	91	35	17	18	28	1.93
43261710--43261786	40	1.9	39	81	2	91	37	16	18	27	1.92
43261822--43262019	41	4.8	41	86	3	222	21	18	30	29	1.97
43262432--43262464	7	4.6	7	92	7	57	15	0	51	33	1.43
43262483--43262511	8	3.8	8	90	9	51	20	0	41	37	1.53
43262483--43262511	15	1.9	15	100	0	58	20	0	41	37	1.53
43262678--43262751	21	3.5	21	75	1	58	24	0	35	40	1.55
43266282--43266552	43	6.3	43	81	4	271	22	17	25	35	1.95
43266298--43266554	85	3.0	87	80	5	281	23	17	24	33	1.96
43266733--43266802	8	9.5	8	73	20	55	31	0	11	57	1.34
43266760--43266815	19	3.3	19	63	31	54	33	0	12	53	1.39
43266748--43266819	31	2.3	31	97	0	135	34	0	12	52	1.39
43266746--43266859	12	10.2	12	66	22	70	33	0	15	50	1.44
43266775--43266847	9	8.9	9	72	17	61	32	0	19	47	1.49
43266779--43266881	21	4.6	21	77	16	75	33	2	17	46	1.63
43266862--43266887	12	2.2	12	100	0	52	46	7	7	38	1.61
43266918--43267017	45	2.2	45	94	1	173	49	7	4	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43266983--43267010	13	2.2	13	100	0	56	46	7	7	39	1.59
43267307--43267346	21	1.9	21	89	0	62	20	17	22	40	1.92
43269751--43269796	7	6.6	7	84	0	65	26	52	0	21	1.47
43269885--43269958	14	5.1	14	71	14	53	35	40	0	24	1.55
43269901--43269954	21	2.6	21	80	8	65	35	40	0	24	1.55
43270504--43270702	81	2.4	83	82	7	230	32	26	18	23	1.97
43270504--43270702	41	4.9	41	80	4	206	32	26	18	23	1.97
43270958--43271142	43	4.3	43	87	2	257	31	28	18	21	1.97
43270958--43271149	85	2.3	87	86	4	275	31	28	19	21	1.97
43271964--43272208	42	5.8	42	90	2	368	33	21	22	23	1.98
43271975--43272211	126	1.9	126	94	1	422	32	20	21	25	1.98
43271966--43272304	42	8.1	42	84	3	216	31	20	20	27	1.97
43271964--43272295	84	4.0	81	81	7	349	31	20	20	27	1.98
43271975--43272295	126	2.5	126	86	3	396	30	20	20	28	1.98
43272364--43272397	14	2.4	14	95	0	59	52	20	8	17	1.71
43272621--43272691	21	3.4	21	80	0	79	2	45	18	33	1.64
43278141--43278287	7	17.0	9	65	31	65	33	0	21	45	1.52
43278168--43278575	26	16.1	26	86	7	565	32	0	20	46	1.56
43278435--43278556	18	6.4	18	67	26	74	35	1	18	44	1.60
43278612--43278759	74	2.0	74	100	0	296	40	6	1	51	1.37
43278909--43278979	13	5.5	13	86	0	106	50	2	7	39	1.44
43278908--43278979	26	2.8	26	100	0	144	50	2	6	40	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43278984--43279027	17	2.6	17	100	0	88	36	0	15	47	1.46
43282323--43282373	23	2.2	24	82	10	61	43	3	0	52	1.19
43282338--43282373	16	2.3	17	86	13	51	41	2	0	55	1.14
43283306--43283666	190	1.9	190	93	1	616	29	20	18	31	1.96
43283481--43283813	114	2.9	112	80	6	352	26	22	18	31	1.97
43286020--43286065	24	2.0	23	83	12	58	30	17	4	47	1.67
43286764--43286813	3	17.0	3	95	4	93	68	0	0	32	0.90
43292032--43292155	27	4.6	27	87	0	149	20	17	22	39	1.92
43292041--43292155	54	2.1	54	91	0	185	19	19	20	40	1.91
43293066--43293105	15	2.7	15	88	3	55	20	2	12	65	1.38
43293323--43293387	28	2.3	28	91	0	112	33	23	12	30	1.91
43300225--43300310	24	3.6	23	69	22	61	47	1	15	36	1.53
43302174--43302335	87	1.9	87	84	2	218	25	24	20	29	1.99
43302135--43302601	213	2.2	214	87	4	672	26	22	20	30	1.98
43302186--43302597	44	9.5	44	72	13	248	27	22	20	30	1.98
43314262--43314299	19	2.0	19	100	0	76	26	10	31	31	1.90
43322922--43323007	43	2.0	45	93	4	149	43	17	5	33	1.73
43322922--43322992	25	3.1	25	71	26	84	43	18	7	30	1.76
43322938--43323003	18	3.3	18	67	25	51	43	15	6	34	1.71
43323356--43323457	41	2.5	41	86	0	123	30	25	19	24	1.98
43323385--43323464	41	2.0	41	92	0	133	30	23	18	27	1.98
43327029--43327086	22	2.6	22	83	0	80	46	25	17	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43327055--43327185	38	3.4	38	84	0	172	41	28	16	12	1.86
43340532--43340594	28	2.2	28	83	5	74	61	4	1	31	1.26
43343789--43343852	29	2.2	29	91	0	101	21	26	34	17	1.95
43347633--43347663	9	3.4	9	90	0	53	25	12	22	38	1.90
43347947--43348005	30	2.0	30	86	6	84	20	38	0	40	1.53
43348664--43348699	5	7.2	5	100	0	72	22	19	19	38	1.93
43349598--43349694	20	4.8	20	68	22	67	44	4	2	49	1.33
43349626--43349744	49	2.4	49	78	12	120	44	5	4	46	1.44
43360431--43360461	14	2.1	15	94	5	55	35	6	6	51	1.53
43378078--43378132	20	2.8	20	88	0	83	25	29	16	29	1.97
43378465--43378658	45	4.3	45	89	0	271	41	14	18	25	1.88
43379283--43379429	64	2.3	64	96	2	267	51	15	18	14	1.76
43379413--43379439	10	2.7	10	100	0	54	85	7	0	7	0.75
43379349--43379495	76	2.0	74	91	2	240	51	14	17	16	1.77
43381829--43381883	20	2.8	20	88	0	83	25	29	16	29	1.97
43382216--43382409	45	4.3	45	89	0	271	41	14	18	25	1.88
43397462--43397518	2	28.5	2	96	0	105	1	0	47	50	1.11
43410096--43410128	17	1.9	17	93	0	57	33	24	21	21	1.97
43413778--43413837	17	3.5	17	76	13	61	33	33	15	18	1.92
43423714--43423758	22	2.0	23	91	4	74	42	4	11	42	1.60
43428961--43429019	29	2.1	29	83	3	75	64	10	13	11	1.50
43442017--43442071	8	6.5	8	78	12	56	27	3	0	69	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43442012--43442062	19	2.9	18	76	23	56	25	5	0	68	1.12
43442003--43442070	27	2.5	26	76	6	73	29	4	0	66	1.11
43442119--43442213	29	3.3	28	76	15	81	36	6	1	55	1.32
43442197--43442288	33	2.8	31	80	9	94	30	6	3	59	1.38
43442223--43442295	34	2.1	34	82	12	87	31	8	2	57	1.42
43442897--43442961	15	4.1	15	70	16	51	50	3	0	46	1.17
43449546--43449587	11	3.7	12	78	12	52	66	7	0	26	1.17
43449818--43449860	21	2.0	21	82	8	52	20	37	0	41	1.53
43450968--43451260	154	1.9	154	92	0	489	27	15	17	40	1.89
43454653--43454852	108	1.9	106	89	2	310	35	19	17	28	1.94
43461570--43461635	28	2.3	29	82	10	82	62	0	3	34	1.11
43461566--43461636	10	7.4	10	71	6	58	59	0	2	38	1.12
43461841--43461877	10	3.8	10	89	3	58	29	0	0	70	0.88
43461921--43461990	18	3.7	18	72	10	68	24	4	4	67	1.27
43462086--43462291	89	2.3	90	80	4	229	32	10	20	36	1.86
43463177--43463213	19	1.9	19	100	0	74	37	0	0	62	0.96
43463471--43463529	31	1.9	30	82	3	73	40	13	6	38	1.71
43466132--43466171	18	2.3	18	91	4	64	32	5	0	62	1.17
43467310--43467339	12	2.5	12	94	0	51	63	3	0	33	1.11
43467877--43468023	43	3.4	43	95	0	258	29	14	15	40	1.87
43469413--43469472	16	3.8	16	76	6	59	38	20	10	31	1.85
43469415--43469477	32	2.0	32	84	6	83	36	19	12	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43471393--43471437	20	2.2	21	84	7	58	66	0	2	31	1.04
43471402--43471449	19	2.6	18	80	9	60	66	0	4	29	1.10
43471506--43471554	10	5.2	10	78	14	50	22	0	4	73	1.00
43471659--43471895	85	2.8	85	81	8	268	34	12	16	37	1.85
43472444--43472573	28	4.6	28	71	17	99	61	0	3	33	1.19
43472503--43472572	19	3.6	19	80	3	77	67	0	5	27	1.13
43472494--43472572	10	8.3	9	74	12	52	67	0	6	26	1.15
43472446--43472573	29	4.5	27	71	18	100	61	0	3	33	1.20
43472521--43472583	29	2.2	29	80	2	74	65	3	6	25	1.32
43472741--43472797	19	2.9	19	79	10	62	24	3	5	66	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175