genome.fa.s16.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  162  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48661531--48661581	18	2.6	19	75	15	50	31	11	3	52	1.56
48662990--48663048	20	2.9	19	80	9	64	30	25	10	33	1.89
48662987--48663044	10	5.7	10	72	11	55	31	27	12	29	1.92
48664508--48664643	46	3.0	46	82	2	166	29	19	22	29	1.98
48670876--48670930	19	2.9	19	83	5	76	40	0	5	54	1.23
48670876--48670943	20	3.5	19	83	4	82	39	0	5	54	1.25
48670863--48670958	39	2.4	39	73	11	97	38	0	5	56	1.22
48673563--48673626	24	2.7	24	97	0	119	37	21	29	10	1.88
48676267--48676425	53	3.0	53	97	0	291	42	27	11	17	1.84
48676867--48676902	3	12.0	3	93	0	63	63	0	33	2	1.08
48685050--48685293	46	5.6	45	81	10	285	32	15	22	29	1.95
48685086--48685158	36	2.0	36	94	0	128	36	13	20	28	1.91
48685050--48685293	82	2.8	84	82	12	300	32	15	22	29	1.95
48686335--48686405	26	2.8	26	74	14	69	32	23	26	16	1.96
48688699--48688768	35	2.0	35	100	0	140	20	28	22	28	1.98
48697018--48697058	16	2.4	18	84	8	59	48	0	0	51	1.00
48697025--48697081	24	2.4	22	80	11	60	56	0	0	43	0.99
48697046--48697081	19	1.9	18	88	5	54	58	0	0	41	0.98
48697015--48697078	30	2.2	28	83	10	85	54	0	0	45	0.99
48698192--48698228	16	2.4	16	90	4	58	64	0	0	35	0.94
48699651--48699728	39	2.0	39	100	0	156	43	17	7	30	1.77
48701233--48701298	33	2.0	33	100	0	132	39	9	18	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48702583--48702635	27	2.0	27	100	0	106	47	7	11	33	1.68
48708734--48708788	26	2.2	24	83	6	65	29	0	3	67	1.08
48713032--48713129	23	4.3	23	90	2	162	31	26	21	20	1.98
48713039--48713127	45	2.0	45	95	0	160	31	26	22	19	1.97
48716092--48716136	14	3.2	14	100	0	90	6	15	44	33	1.73
48719942--48719997	24	2.2	26	87	6	80	69	0	3	26	1.04
48728715--48728744	5	6.2	5	92	7	53	36	0	63	0	0.95
48730036--48730060	5	5.0	5	100	0	50	20	80	0	0	0.72
48739575--48739952	195	1.9	193	82	3	463	30	17	28	23	1.97
48749619--48749698	31	2.6	31	88	4	117	46	8	26	18	1.78
48751936--48752033	6	15.8	6	78	10	63	13	39	4	42	1.63
48757715--48757755	21	1.9	22	85	5	57	36	4	9	48	1.58
48758438--48758491	18	2.9	18	76	15	56	38	3	0	57	1.17
48758454--48758512	28	2.0	29	83	6	75	37	1	3	57	1.25
48758452--48758594	9	15.2	9	68	18	71	34	4	3	57	1.35
48758586--48758637	24	2.2	24	82	6	61	36	9	5	48	1.60
48762123--48762161	11	3.5	11	82	6	51	46	12	0	41	1.42
48762209--48762247	20	1.9	21	89	5	62	41	0	0	58	0.98
48773424--48773530	51	2.1	52	82	5	128	56	6	5	31	1.48
48773797--48773833	3	12.3	3	88	11	58	64	0	0	35	0.94
48773797--48773849	24	2.2	24	83	9	65	66	1	0	32	1.03
48774293--48774347	19	2.7	21	80	11	78	38	10	9	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48793437--48793466	13	2.4	13	94	5	53	23	0	16	60	1.36
48798474--48798503	8	3.9	8	95	4	53	53	0	0	46	1.00
48800150--48800194	18	2.4	19	79	17	58	33	2	2	62	1.20
48812084--48812114	2	15.5	2	93	0	53	3	0	48	48	1.17
48813148--48813280	59	2.2	60	88	6	207	36	9	15	38	1.81
48826084--48826108	13	1.9	13	100	0	50	24	32	12	32	1.91
48827213--48827262	11	4.7	11	77	22	54	44	28	4	24	1.72
48827213--48827263	21	2.4	21	100	0	102	43	29	3	23	1.72
48829458--48829502	20	2.2	20	88	0	63	31	11	17	40	1.85
48835111--48835151	16	2.4	18	84	12	59	68	4	2	24	1.22
48838504--48838544	18	2.2	18	87	12	57	70	4	2	21	1.18
48842296--48842333	20	1.9	20	84	10	51	60	0	2	36	1.11
48845596--48845631	3	12.0	3	100	0	72	33	0	0	66	0.92
48853500--48853534	17	2.1	17	89	5	54	48	5	14	31	1.67
48854184--48854341	41	3.9	41	91	1	228	19	18	27	33	1.96
48858147--48858513	182	2.0	182	98	0	716	28	15	24	31	1.95
48861463--48861497	17	2.1	17	89	5	54	48	5	14	31	1.67
48862147--48862308	41	4.0	41	91	1	236	19	18	29	33	1.95
48863666--48863704	17	2.4	16	91	4	60	56	0	2	41	1.13
48867202--48867233	3	10.7	3	100	0	64	68	0	0	31	0.90
48870996--48871051	21	2.6	22	77	8	62	28	19	23	28	1.98
48873820--48873879	25	2.4	25	85	0	84	16	8	5	70	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48879095--48879125	2	15.5	2	100	0	62	48	0	0	51	1.00
48879360--48879384	12	2.1	12	100	0	50	20	0	0	80	0.72
48881998--48882030	16	2.1	16	94	0	57	51	0	0	48	1.00
48885259--48885404	79	1.8	79	94	0	256	29	10	15	43	1.81
48887519--48887575	24	2.4	24	90	0	87	29	33	24	12	1.92
48888493--48888564	36	2.0	35	97	2	135	29	13	6	50	1.68
48889391--48889429	17	2.2	17	86	4	51	15	0	10	74	1.07
48897491--48897531	7	5.9	7	91	0	64	19	0	0	80	0.71
48897539--48897592	27	2.1	26	82	6	65	29	0	3	66	1.09
48904182--48904420	101	2.4	101	90	2	390	31	16	23	28	1.96
48904183--48904411	33	6.8	32	66	12	93	30	16	24	28	1.97
48904413--48904465	26	2.0	26	92	0	88	52	3	22	20	1.62
48912366--48912428	28	2.2	29	88	5	94	61	0	4	33	1.17
48915766--48915845	3	25.7	3	78	12	72	35	2	2	60	1.24
48916059--48916108	26	2.0	26	88	4	75	36	16	6	42	1.72
48922717--48922755	20	2.0	20	90	5	62	61	0	2	35	1.10
48934614--48934693	39	2.1	39	95	0	142	26	10	22	41	1.85
48951776--48951817	20	2.2	19	83	12	50	64	4	2	28	1.26
48952404--48952457	27	2.0	28	92	7	94	48	1	0	50	1.11
48952401--48952466	27	2.4	27	85	14	91	50	1	0	48	1.10
48952858--48952887	11	2.6	11	94	5	51	40	0	0	60	0.97
48952852--48952913	31	2.0	31	87	6	90	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48955461--48955635	41	4.3	40	78	8	156	32	26	20	21	1.97
48958099--48958263	51	3.3	51	88	0	242	29	23	13	33	1.93
48960358--48960388	8	4.0	8	91	8	55	35	0	64	0	0.94
48971423--48971458	19	1.9	18	88	5	54	55	19	0	25	1.43
48971824--48971885	23	2.7	24	87	9	85	48	20	4	25	1.70
48973621--48973653	17	1.9	17	88	11	50	42	0	12	45	1.41
48975550--48975645	31	3.1	31	95	3	174	31	9	13	45	1.75
48976189--48976304	55	2.1	56	85	4	153	71	11	14	2	1.24
48976226--48976290	21	2.8	22	76	19	62	69	10	18	1	1.26
48979351--48979443	31	3.0	31	100	0	186	32	9	16	41	1.80
48979745--48979775	4	8.0	4	92	7	55	25	0	0	74	0.82
48984556--48984596	21	2.0	21	90	0	64	19	29	21	29	1.98
48997856--48998501	348	1.9	347	96	0	1193	35	13	18	32	1.89
49003398--49003488	45	2.0	45	87	4	130	38	6	6	48	1.55
49004641--49004744	54	1.9	53	80	5	120	48	4	7	39	1.53
49008600--49008656	27	2.1	27	100	0	114	47	7	28	17	1.73
49009069--49009124	19	2.8	21	75	22	57	42	5	8	42	1.59
49013590--49013615	6	4.3	6	100	0	52	15	0	0	84	0.62
49014325--49014358	6	5.7	6	96	0	59	26	35	0	38	1.57
49015394--49015440	24	2.0	24	91	0	76	46	2	23	27	1.63
49016828--49016858	8	3.9	8	95	0	53	41	9	0	48	1.36
49022805--49022829	6	4.2	6	100	0	50	32	52	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49025689--49025714	13	2.0	13	100	0	52	15	0	0	84	0.62
49027693--49027720	2	14.0	2	100	0	56	50	0	0	50	1.00
49029087--49029280	43	4.5	43	83	7	191	30	24	18	26	1.98
49033869--49033904	16	2.2	16	95	0	63	25	0	33	41	1.55
49033918--49034019	44	2.3	44	100	0	204	27	3	30	38	1.75
49033918--49034036	44	2.8	42	92	6	172	29	3	31	36	1.74
49034184--49034218	18	2.0	17	88	5	52	54	0	0	45	0.99
49034399--49034446	18	2.8	18	74	22	50	56	0	0	43	0.99
49034378--49034429	15	3.6	15	80	12	56	53	1	0	44	1.11
49034355--49034438	43	1.9	43	83	7	107	53	2	2	41	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175