genome.fa.s16.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  36  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9738559--9738596	20	1.9	20	94	0	67	21	15	23	39	1.92
9740760--9740793	14	2.4	14	90	0	50	29	0	23	47	1.52
9740768--9740794	14	1.9	14	100	0	54	29	0	25	44	1.54
9740857--9740890	14	2.3	15	90	5	52	35	0	29	35	1.58
9740910--9741156	130	1.9	133	80	6	297	27	1	31	40	1.66
9745968--9746220	43	5.9	43	83	4	260	25	18	27	28	1.98
9745949--9746220	87	3.2	85	80	1	301	24	18	27	29	1.98
9745968--9746240	86	3.2	86	80	1	296	26	19	26	27	1.99
9751394--9751779	190	2.0	190	99	0	763	38	10	18	32	1.85
9757803--9757858	26	2.2	26	83	3	69	48	1	1	48	1.22
9763970--9764014	20	2.2	20	84	4	54	35	0	2	62	1.08
9765372--9765445	36	2.1	36	100	0	148	47	13	8	31	1.72
9768388--9768445	27	2.1	27	83	0	71	20	37	25	15	1.92
9769742--9769784	17	2.5	17	81	7	52	44	2	4	48	1.36
9770878--9770933	19	2.7	20	76	21	53	44	16	1	37	1.58
9781916--9781969	20	2.7	20	82	0	63	44	7	11	37	1.68
9787621--9787650	16	1.9	16	93	6	53	50	20	0	30	1.49
9791788--9791834	24	2.1	24	84	11	64	27	10	21	40	1.86
9798644--9798778	43	3.2	43	77	6	148	28	22	17	31	1.97
9800321--9800418	27	3.5	28	88	5	128	32	28	13	25	1.93
9820385--9820437	25	2.1	25	89	6	81	41	9	13	35	1.76
9820995--9821093	45	2.2	45	87	5	137	21	5	20	53	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9821908--9822020	56	2.0	56	89	0	172	26	8	13	51	1.70
9826116--9826157	15	2.7	16	82	14	52	52	2	0	45	1.13
9826125--9826166	15	2.9	15	82	10	52	52	0	0	47	1.00
9826231--9826277	16	3.0	16	78	12	53	51	2	0	46	1.13
9826351--9826397	16	3.0	16	78	12	53	51	2	0	46	1.13
9826592--9826637	16	2.9	16	78	12	51	52	2	0	45	1.13
9826592--9826646	15	3.7	15	79	13	53	52	1	0	45	1.11
9826712--9826757	16	2.9	16	78	12	51	52	2	0	45	1.13
9826712--9826766	15	3.7	15	79	13	53	52	1	0	45	1.11
9826114--9826870	120	6.3	120	97	0	1345	49	5	2	42	1.38
9827986--9828037	25	2.1	25	100	0	104	42	15	26	15	1.87
9828138--9828408	137	2.0	138	91	2	438	46	14	13	25	1.81
9831794--9831860	32	2.1	32	83	10	84	55	4	26	13	1.57
9835928--9835974	20	2.3	20	88	0	76	25	27	31	14	1.95
9840407--9840454	20	2.4	20	92	0	78	29	29	29	12	1.93
9841989--9842045	21	2.6	22	86	8	73	31	1	3	63	1.22
9845033--9845062	8	3.8	8	95	0	51	10	40	0	50	1.36
9845032--9845069	16	2.4	17	82	13	53	15	36	0	47	1.46
9848016--9848052	5	7.6	5	88	11	51	40	0	2	56	1.13
9855876--9855914	5	7.6	5	91	5	60	79	15	2	2	0.95
9856099--9856170	30	2.4	30	83	0	90	31	12	26	29	1.93
9856492--9856525	9	3.8	9	92	0	50	47	14	11	26	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9856489--9856525	18	2.1	18	94	0	65	48	13	10	27	1.75
9856539--9856585	22	2.0	23	84	8	60	19	25	0	55	1.43
9857144--9857181	19	2.0	19	100	0	76	31	10	26	31	1.90
9859589--9859615	6	4.5	6	100	0	54	70	29	0	0	0.88
9860943--9861057	56	2.1	56	100	0	230	35	13	20	29	1.92
9865062--9865129	24	2.8	24	79	0	64	26	16	30	26	1.96
9867143--9867205	22	2.9	23	75	15	55	49	1	6	42	1.37
9872079--9872503	44	9.7	44	68	13	214	31	18	20	29	1.96
9872064--9872609	175	3.1	175	92	1	893	32	18	20	29	1.96
9874405--9874445	17	2.5	16	84	7	55	43	4	0	51	1.23
9874441--9874481	21	1.9	22	85	5	57	36	9	7	46	1.65
9876433--9876518	43	2.0	43	86	8	122	54	2	22	20	1.56
9881466--9881743	138	2.0	138	91	0	448	44	16	12	26	1.83
9891301--9891367	30	2.2	30	89	0	98	19	26	31	22	1.98
9896316--9896409	27	3.4	27	78	16	113	39	9	28	22	1.85
9899035--9899148	33	3.5	33	83	10	146	17	23	14	43	1.86
9899042--9899170	66	2.0	65	86	10	183	20	23	15	41	1.90
9916584--9916661	16	4.6	16	71	16	50	75	5	0	19	0.98
9916584--9916652	6	11.5	6	75	14	54	75	4	0	20	0.97
9918111--9918142	16	2.1	16	94	5	57	71	0	15	12	1.14
9918310--9918348	18	2.2	18	86	4	53	69	0	12	17	1.19
9918368--9918413	22	2.0	23	84	12	60	67	6	2	23	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9926032--9926102	30	2.6	26	73	20	63	53	1	2	42	1.24
9926384--9926428	8	5.6	8	84	7	56	26	2	0	71	0.98
9927347--9927386	13	3.1	13	79	13	55	35	25	7	32	1.84
9929791--9929855	32	2.1	30	83	13	80	27	15	7	49	1.72
9929939--9930003	27	2.4	27	89	2	96	50	6	4	38	1.48
9939615--9939689	24	3.2	24	78	14	68	28	2	4	65	1.24
9939776--9939815	19	2.1	19	86	9	55	25	0	2	72	0.97
9939776--9939815	9	4.2	10	82	17	50	25	0	2	72	0.97
9940213--9940282	18	3.7	18	77	11	52	67	2	2	27	1.19
9940235--9940366	10	12.9	10	64	21	51	62	1	3	31	1.22
9940214--9940337	42	3.1	40	74	12	103	65	1	4	28	1.22
9940228--9940331	40	2.6	38	78	13	102	66	0	4	27	1.18
9940228--9940366	21	6.9	19	68	20	79	64	1	3	30	1.20
9940306--9940366	22	2.9	21	76	11	63	60	1	1	36	1.16
9940458--9940496	17	2.3	17	86	8	53	43	0	2	53	1.14
9943680--9943712	13	2.4	14	95	5	59	54	15	3	27	1.55
9945513--9945597	20	4.2	20	81	3	82	40	5	8	45	1.58
9946145--9946316	92	1.9	92	93	0	299	40	20	10	28	1.85
9950814--9950838	12	2.1	12	100	0	50	8	24	0	68	1.16
9950803--9950863	27	2.3	27	80	5	70	4	31	1	62	1.26
9964989--9965015	14	1.9	14	100	0	54	14	25	22	37	1.93
9966390--9966459	28	2.5	28	78	0	86	27	17	20	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9968497--9968608	51	2.2	50	85	3	152	28	34	19	16	1.94
9971739--9971810	32	2.2	32	92	4	119	34	1	8	55	1.39
9971734--9971810	10	7.3	10	76	11	64	35	1	9	54	1.40
9989606--9989685	25	3.2	25	80	7	92	35	22	18	23	1.96
10002596--10002708	37	3.1	37	62	25	87	32	9	21	36	1.86
10002596--10002776	71	2.5	71	93	0	299	33	12	20	33	1.90
10005445--10005495	20	2.5	21	81	15	54	43	5	1	49	1.38
10008911--10008952	19	2.0	21	86	13	61	59	0	0	40	0.97
10010055--10010109	22	2.5	22	100	0	110	30	5	18	45	1.72
10012252--10012314	30	2.1	30	87	0	90	25	4	14	55	1.58
10018565--10018623	17	3.4	17	71	17	57	37	1	3	57	1.25
10019124--10019178	23	2.4	22	77	17	58	47	3	7	41	1.49
10024375--10024435	29	2.1	29	84	0	77	22	32	24	19	1.97
10024579--10024647	19	3.6	19	70	18	61	33	26	24	15	1.95
10029899--10029932	16	2.2	15	94	5	59	64	5	5	23	1.38
10032839--10033016	27	6.6	26	82	6	178	26	15	28	29	1.96
10032840--10032995	82	1.9	81	86	3	224	26	16	28	28	1.97
10032836--10033016	82	2.2	81	82	2	220	27	16	27	29	1.97
10032921--10033027	27	3.9	27	85	1	70	26	14	28	30	1.95
10034470--10034535	21	3.1	21	75	0	69	4	31	16	46	1.67
10037658--10038560	30	30.2	30	93	4	1535	51	0	10	37	1.39
10037658--10038560	59	15.1	59	93	4	1503	51	0	10	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10038869--10038949	39	2.1	39	100	0	162	55	9	14	19	1.67
10042406--10042458	21	2.5	21	93	0	88	30	37	9	22	1.86
10043377--10043442	29	2.3	29	94	0	114	24	34	25	15	1.94
10043385--10043436	15	3.5	15	72	15	54	25	34	21	19	1.96
10059043--10059115	3	24.3	3	81	10	87	63	0	34	2	1.09
10059043--10059119	21	3.8	20	83	14	97	63	0	33	2	1.08
10064663--10064716	25	2.1	26	82	3	65	38	0	16	44	1.48
10064684--10064726	17	2.7	15	80	16	50	46	0	11	41	1.40
10068205--10068286	43	2.0	41	87	4	119	50	3	21	24	1.65
10073901--10073984	42	2.0	42	88	2	123	50	3	20	26	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175