genome.fa.s16.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  156  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47060901--47060976	30	2.5	30	77	8	82	43	11	18	26	1.84
47066411--47066483	21	3.5	20	78	17	69	23	2	4	69	1.18
47066410--47066459	20	2.5	19	82	17	66	26	2	2	70	1.09
47068428--47068492	33	2.0	33	93	0	112	16	9	15	58	1.62
47071822--47071881	21	2.8	21	80	7	59	66	3	1	28	1.17
47071813--47071933	56	2.3	50	80	14	129	62	3	2	31	1.24
47084712--47084760	24	2.0	24	88	0	71	24	30	20	24	1.98
47085407--47085438	6	5.3	6	92	0	55	50	12	0	37	1.41
47085402--47085440	12	3.2	12	88	0	60	48	10	2	38	1.51
47089109--47089336	10	24.0	9	65	18	54	57	4	3	34	1.35
47089235--47089292	29	1.9	30	86	13	84	58	8	0	32	1.28
47089440--47089475	14	2.5	15	90	4	56	30	0	0	69	0.89
47089876--47090066	10	19.4	10	67	13	58	31	2	4	61	1.30
47089873--47089932	30	2.0	30	87	3	86	28	0	6	65	1.18
47089969--47090058	9	9.8	9	70	20	53	33	2	3	61	1.25
47090004--47090067	19	3.4	19	68	14	51	31	3	1	64	1.19
47090674--47090708	16	2.2	16	89	0	52	62	2	5	28	1.32
47093154--47093197	21	2.2	21	84	8	56	45	18	25	11	1.82
47093170--47093305	42	3.2	42	80	8	134	44	17	22	15	1.86
47093166--47093248	21	4.0	21	72	9	71	43	20	22	13	1.86
47093189--47093260	21	3.4	21	73	7	74	45	18	22	13	1.84
47093165--47093286	21	5.8	21	70	8	70	42	19	24	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47102335--47102390	24	2.3	23	82	11	60	25	1	3	69	1.14
47103974--47104011	19	2.0	20	84	5	51	47	0	2	50	1.15
47103969--47104017	25	2.0	25	84	15	66	51	0	2	46	1.12
47104548--47104601	19	2.9	18	77	20	58	31	0	1	66	1.02
47104550--47104604	18	3.0	18	81	2	65	32	0	1	65	1.03
47109770--47109821	24	2.2	24	89	0	77	53	7	3	34	1.48
47110934--47110968	15	2.3	15	90	0	61	65	17	0	17	1.27
47112027--47112059	9	3.9	9	88	11	52	33	0	0	66	0.92
47112028--47112074	14	3.1	15	80	17	53	27	2	0	70	0.99
47112164--47112221	4	15.0	4	85	7	75	24	5	0	70	1.07
47114585--47114624	20	2.0	20	90	0	62	27	10	12	50	1.72
47114570--47114636	34	1.9	35	90	3	109	31	8	13	46	1.74
47114564--47114640	14	5.0	15	71	20	52	33	9	14	42	1.77
47115540--47115596	29	1.9	30	86	10	82	50	1	5	42	1.35
47127601--47127638	16	2.4	16	86	0	58	55	5	0	39	1.23
47131493--47131530	3	12.7	3	94	0	67	31	0	2	65	1.06
47133911--47133945	3	11.7	3	93	0	61	2	31	0	65	1.07
47134047--47134072	2	13.0	2	100	0	52	50	0	50	0	1.00
47137273--47137337	20	3.3	20	70	12	71	43	7	7	41	1.62
47137271--47137359	39	2.3	39	96	1	162	41	6	10	41	1.65
47137293--47137351	19	3.1	19	67	13	57	38	6	11	42	1.68
47143708--47144035	161	2.0	161	99	0	647	26	14	27	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47147478--47147527	6	8.2	6	86	4	73	46	16	20	18	1.85
47147802--47147888	40	2.2	40	87	4	122	40	21	8	29	1.82
47149414--47149438	11	2.3	11	100	0	50	32	24	20	24	1.98
47150532--47150637	13	7.7	13	67	13	52	4	21	3	69	1.23
47150803--47150838	18	1.9	19	94	5	65	50	5	0	44	1.25
47154164--47154241	10	7.4	10	70	18	52	1	25	3	69	1.13
47154167--47154241	14	5.2	14	69	12	62	1	25	4	69	1.14
47154159--47154211	27	2.0	27	81	7	63	0	26	1	71	0.96
47154432--47154467	18	1.9	19	94	5	65	47	5	2	44	1.41
47155330--47155364	17	2.1	17	88	0	52	5	14	5	74	1.19
47158542--47158601	30	2.0	30	100	0	120	30	20	6	43	1.77
47161100--47161150	18	2.8	18	90	0	84	23	7	17	50	1.72
47165408--47165462	18	3.1	18	91	0	92	23	7	20	49	1.74
47165780--47165828	17	3.0	17	80	16	59	32	0	0	67	0.91
47165788--47165830	16	2.4	19	77	18	56	34	0	0	65	0.93
47171054--47171237	92	2.0	92	100	0	368	31	16	14	38	1.88
47177473--47177563	25	3.6	25	78	8	89	21	24	18	35	1.96
47177470--47177581	25	4.5	25	78	6	88	21	24	19	34	1.96
47178220--47178252	15	2.3	15	89	5	50	39	0	24	36	1.56
47184888--47184912	13	1.9	13	100	0	50	16	12	24	48	1.79
47189721--47189772	23	2.2	23	86	6	68	46	5	1	46	1.38
47209409--47209444	18	2.0	19	89	10	58	50	16	2	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47209484--47209768	147	1.9	147	80	7	326	41	8	11	38	1.72
47215177--47215210	15	2.2	16	89	5	52	50	2	0	47	1.16
47220877--47220909	17	2.0	17	88	5	50	42	3	0	54	1.15
47221764--47221793	14	2.1	14	93	0	51	40	23	6	30	1.80
47238965--47238999	16	2.1	17	89	5	54	40	0	2	57	1.14
47238961--47238999	16	2.4	16	83	8	53	41	0	2	56	1.13
47242320--47242380	32	1.9	32	83	12	81	42	3	1	52	1.27
47248539--47248581	18	2.4	18	92	0	68	46	4	0	48	1.22
47249805--47249865	32	1.9	32	100	0	122	50	19	3	26	1.63
47249805--47249878	32	2.5	30	87	10	100	51	20	2	25	1.60
47253338--47253390	17	3.4	17	70	20	60	54	20	9	15	1.68
47253333--47253391	30	2.0	30	93	0	100	54	20	10	15	1.70
47259135--47259211	31	2.4	32	84	2	93	37	14	10	37	1.80
47260077--47260114	2	19.5	2	94	5	69	52	0	47	0	1.00
47280441--47280540	31	3.3	31	75	10	82	19	16	23	42	1.89
47280444--47280522	30	2.6	31	76	8	81	18	17	25	37	1.93
47286026--47286071	22	2.0	23	88	12	69	36	0	0	63	0.95
47289719--47289823	34	3.1	34	78	6	115	28	12	17	41	1.85
47294809--47294853	22	2.0	22	91	0	72	37	6	11	44	1.66
47299114--47299141	14	2.0	14	100	0	56	28	35	21	14	1.92
47300487--47300552	34	1.9	34	87	0	96	51	4	12	31	1.59
47303326--47303405	41	2.0	40	87	2	115	50	15	8	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47305682--47305718	15	2.5	15	100	0	74	40	8	18	32	1.80
47316237--47316304	22	3.1	22	76	0	73	60	11	11	16	1.59
47319658--47319688	4	7.8	4	92	0	53	25	0	70	3	1.02
47322925--47322983	10	5.6	10	78	9	55	42	3	6	47	1.46
47324716--47324762	24	2.0	24	86	0	67	59	0	2	38	1.09
47324709--47324772	33	1.9	33	81	12	78	59	0	1	39	1.07
47326027--47326135	32	3.6	31	74	17	102	42	2	9	45	1.50
47326035--47326164	59	2.2	60	87	1	181	43	3	10	43	1.53
47326056--47326180	59	2.1	59	83	2	153	43	3	9	44	1.53
47333066--47333110	23	2.0	23	86	0	63	35	0	0	64	0.94
47333097--47333157	26	2.2	29	80	11	67	31	0	3	65	1.09
47333070--47333157	28	3.1	28	76	12	81	31	0	2	65	1.05
47333404--47333430	6	4.5	6	100	0	54	51	14	0	33	1.43
47336024--47336057	17	1.9	18	88	5	52	44	2	0	52	1.16
47343189--47343221	14	2.4	14	90	5	50	42	0	0	57	0.98
47365589--47365857	92	2.9	95	77	8	257	33	18	18	29	1.95
47365795--47366037	44	5.5	44	82	1	193	31	20	22	25	1.98
47366412--47366453	22	1.9	22	90	9	68	45	35	4	14	1.66
47367751--47367778	3	9.3	3	100	0	56	32	0	0	67	0.91
47374472--47374506	17	2.1	17	94	0	61	54	2	5	37	1.39
47374735--47374814	36	2.2	36	80	8	92	52	2	8	36	1.46
47374945--47375023	3	26.3	3	84	5	106	63	2	3	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47377087--47377763	88	7.7	88	93	1	999	25	22	22	29	1.99
47382513--47382566	19	2.8	20	77	11	58	42	12	18	25	1.86
47384605--47384639	17	2.1	17	94	0	61	54	2	5	37	1.39
47384866--47384945	36	2.2	36	80	8	92	52	2	8	36	1.46
47385076--47385139	3	21.3	3	80	6	76	62	3	4	29	1.31
47385067--47385139	18	4.1	18	80	7	85	61	5	4	28	1.37
47396280--47396320	19	2.2	19	86	4	57	56	4	7	31	1.48
47397635--47397664	13	2.3	13	100	0	60	30	16	40	13	1.87
47400083--47400147	27	2.3	30	89	7	100	43	1	0	55	1.09
47400081--47400148	30	2.4	27	72	13	64	44	1	0	54	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175