genome.fa.s16.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  110  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34857625--34857662	11	3.5	11	88	0	58	57	21	10	10	1.61
34857620--34857662	22	2.0	22	90	0	68	60	18	11	9	1.57
34858345--34858383	14	2.8	13	81	11	51	17	5	0	76	0.96
34862165--34862191	6	4.5	6	100	0	54	33	29	37	0	1.58
34864859--34864910	24	2.2	24	85	0	68	55	7	3	32	1.46
34865222--34865262	21	2.0	21	85	0	55	7	36	0	56	1.27
34869990--34870118	64	2.0	63	93	1	222	41	8	24	25	1.83
34871081--34871807	261	2.8	262	83	6	922	36	19	13	30	1.90
34874286--34874335	16	3.2	16	72	13	50	48	2	2	48	1.24
34876646--34876704	25	2.4	25	80	8	68	55	6	10	27	1.58
34877507--34877550	18	2.4	18	92	0	70	15	2	40	40	1.60
34878966--34879022	29	2.0	29	100	0	114	35	12	17	35	1.87
34883505--34883534	11	2.8	11	95	5	53	80	0	0	20	0.72
34883505--34883534	5	5.8	5	92	7	51	80	0	0	20	0.72
34885239--34885569	42	7.8	42	82	2	340	26	19	21	32	1.97
34885952--34886023	21	3.4	21	88	0	90	4	40	19	36	1.71
34888758--34888831	18	4.1	18	85	0	94	35	0	10	54	1.36
34888758--34888832	27	2.8	27	91	0	123	34	0	10	54	1.35
34888758--34888831	9	8.2	9	84	0	85	35	0	10	54	1.36
34889033--34889072	9	4.8	9	76	17	50	35	0	17	47	1.48
34889047--34889209	43	3.6	43	75	15	177	38	4	12	44	1.62
34889813--34889848	15	2.5	15	90	4	56	63	8	16	11	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34892009--34892042	15	2.3	15	89	0	50	55	35	0	8	1.31
34892651--34893202	204	2.8	194	78	8	478	25	21	20	32	1.97
34892829--34893202	204	1.8	204	83	4	493	25	20	20	33	1.97
34893014--34893651	230	2.8	226	81	6	651	26	21	21	30	1.98
34901782--34901923	32	4.4	32	83	3	169	35	8	10	45	1.69
34904496--34904546	23	2.2	23	89	0	75	27	9	19	43	1.82
34905604--34905643	20	2.0	20	85	9	55	35	12	12	40	1.81
34905647--34905765	63	1.9	62	82	6	150	42	10	12	33	1.78
34906384--34906443	19	3.1	19	86	11	86	68	3	0	28	1.05
34912360--34912435	26	2.9	26	82	3	82	35	15	9	39	1.80
34916785--34916876	25	3.8	25	85	12	120	14	8	20	56	1.64
34916798--34916866	21	3.1	21	89	8	93	17	5	18	57	1.59
34918000--34918118	36	3.2	38	66	20	113	31	7	8	52	1.59
34918002--34918174	73	2.3	75	97	2	323	31	6	8	52	1.59
34918242--34918278	16	2.3	16	100	0	74	27	0	0	72	0.84
34920619--34920722	49	2.1	49	92	3	174	32	5	9	51	1.58
34922177--34922210	17	2.0	17	100	0	68	41	0	0	58	0.98
34922108--34923029	120	7.7	120	94	1	1554	42	1	4	52	1.28
34922533--34922570	18	2.2	17	90	4	58	34	2	0	63	1.09
34922639--34922689	18	2.9	18	85	8	61	39	1	0	58	1.09
34922665--34922716	16	3.5	15	80	17	56	36	1	0	61	1.07
34922660--34922701	16	2.5	18	77	18	54	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34922676--34922731	28	2.0	29	86	10	80	39	0	1	58	1.08
34922894--34922929	18	2.1	17	90	10	56	33	0	0	66	0.92
34922912--34923128	102	2.2	99	92	4	355	42	1	5	51	1.32
34922108--34923407	477	2.8	468	92	3	2144	42	1	4	52	1.29
34923014--34923400	120	3.2	119	92	3	654	42	1	3	51	1.29
34923581--34923643	16	3.9	16	87	0	99	26	30	3	39	1.72
34923572--34923643	32	2.2	32	92	0	117	26	30	4	38	1.75
34932705--34932758	22	2.4	23	75	3	56	68	0	12	18	1.21
34934826--34934864	17	2.1	20	86	13	57	30	17	5	46	1.70
34943830--34943867	12	3.2	12	88	7	51	63	5	2	28	1.30
34945349--34945490	43	3.2	43	67	9	115	25	21	25	28	1.99
34945311--34945520	89	2.4	87	86	3	294	24	23	20	31	1.98
34945523--34946726	44	27.4	44	88	1	1640	22	26	19	31	1.98
34948021--34948109	46	2.0	45	88	2	133	14	19	19	47	1.83
34953445--34953482	12	3.2	12	88	7	51	63	5	2	28	1.30
34958165--34958271	41	2.7	39	78	11	110	59	1	5	32	1.31
34964702--34964887	45	4.1	45	91	1	293	27	22	26	23	1.99
34972563--34972614	24	2.2	24	89	0	77	50	9	3	36	1.54
34976043--34976462	138	3.1	135	84	4	531	46	5	8	40	1.57
34977613--34977649	17	2.2	17	90	9	58	75	2	5	16	1.10
34979270--34979316	3	15.7	3	90	0	76	4	0	29	65	1.11
34980778--34980894	38	3.1	38	85	7	157	12	19	29	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34980802--34980873	22	3.5	22	65	27	68	11	22	30	36	1.89
34986741--34986782	21	2.0	20	86	4	57	30	4	4	59	1.39
34994374--34994403	15	2.0	15	93	0	51	50	6	3	40	1.45
34997599--34997652	19	2.8	19	91	0	90	40	9	12	37	1.76
34998156--34998225	35	2.0	35	83	10	90	20	4	4	71	1.20
34998282--34998350	26	2.7	26	81	2	86	30	1	2	65	1.16
34998298--34998351	22	2.4	22	84	12	65	27	1	3	66	1.19
35005701--35006231	44	12.1	44	77	5	457	28	15	26	29	1.96
35005702--35006242	132	4.1	133	92	1	876	28	15	26	29	1.96
35006939--35006993	21	2.7	21	94	5	96	40	9	12	38	1.75
35007517--35007573	25	2.3	24	85	11	71	17	3	3	75	1.09
35007657--35007749	41	2.4	38	86	13	120	36	11	6	45	1.67
35023502--35023547	24	1.9	24	95	0	83	13	45	4	36	1.63
35023738--35023764	13	2.1	13	100	0	54	22	14	14	48	1.81
35025395--35025437	17	2.7	15	83	13	59	23	11	9	55	1.64
35026409--35026485	20	3.8	20	73	13	86	58	3	3	33	1.35
35026572--35026611	20	2.0	20	90	0	62	50	12	10	27	1.72
35026595--35026630	14	2.6	14	86	0	54	41	19	8	30	1.81
35028115--35028166	24	2.2	24	89	0	77	34	3	7	53	1.48
35028713--35028904	106	1.8	105	85	5	271	32	21	21	23	1.98
35032825--35032884	18	3.4	18	64	13	52	43	6	10	40	1.64
35033059--35033285	43	5.3	43	86	3	314	20	16	33	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35033060--35033278	85	2.6	86	87	2	307	20	16	33	29	1.94
35036333--35036447	40	2.9	40	87	3	162	32	21	24	21	1.98
35036331--35036474	40	3.6	40	79	8	132	36	22	22	18	1.95
35036556--35036685	41	3.2	41	82	2	154	18	20	29	31	1.96
35037257--35037295	14	2.7	15	80	11	55	30	0	28	41	1.57
35037627--35037692	15	4.5	15	75	11	57	22	1	40	34	1.63
35038098--35038202	47	2.2	47	94	1	183	48	6	0	44	1.29
35038640--35038689	25	2.0	25	84	0	64	74	6	2	18	1.12
35038640--35038678	19	2.1	18	85	4	51	76	2	2	17	1.01
35041452--35041755	43	7.2	43	85	4	377	23	18	31	27	1.97
35041452--35041755	128	2.4	128	85	4	409	23	18	31	27	1.97
35043155--35043204	25	2.0	26	84	7	68	52	8	8	32	1.60
35043154--35043207	24	2.2	24	78	12	58	53	7	7	31	1.56
35044249--35044281	15	2.2	15	89	10	50	51	0	0	48	1.00
35045837--35045915	11	6.6	11	68	16	50	36	5	0	58	1.20
35045821--35045902	37	2.2	38	88	2	130	31	4	0	63	1.15
35045876--35045915	11	3.5	11	83	12	53	42	5	0	52	1.23
35050999--35051110	28	4.0	28	84	1	125	23	15	6	55	1.62
35051041--35051121	28	2.9	28	83	1	81	23	12	7	56	1.60
35051629--35051792	85	1.9	84	92	1	274	31	17	21	30	1.96
35053044--35053076	16	2.1	16	88	11	50	42	0	12	45	1.41
35053084--35053171	45	2.0	45	90	4	142	44	18	17	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35053492--35053558	13	5.2	13	85	0	89	37	4	23	34	1.75
35055116--35055148	14	2.3	15	94	5	59	54	0	12	33	1.37
35057152--35057513	44	8.3	44	70	14	137	26	21	19	31	1.98
35057305--35057527	87	2.6	88	82	4	292	26	21	21	30	1.98
35057479--35057927	44	10.2	44	64	15	142	31	24	16	26	1.97
35057450--35058104	132	5.0	132	92	0	1049	30	24	17	27	1.97
35064687--35064767	38	2.1	38	88	6	119	58	7	0	34	1.26
35073458--35073892	216	2.0	215	95	0	789	32	13	19	34	1.91
35076985--35077047	29	2.3	27	81	13	67	49	14	15	20	1.80
35083226--35083320	42	2.3	42	87	3	129	10	21	17	50	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175