genome.fa.s16.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  142  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43644909--43645130	43	5.2	43	80	6	227	25	18	28	27	1.98
43645262--43645585	49	6.6	49	87	3	422	53	18	6	21	1.66
43645269--43645538	146	1.8	147	91	0	443	53	19	5	20	1.66
43645269--43645585	146	2.2	146	86	4	433	53	18	5	21	1.66
43647826--43647871	24	2.0	22	87	12	65	41	6	4	47	1.49
43648462--43648508	24	1.9	25	82	4	60	65	10	10	12	1.46
43648810--43648850	18	2.3	18	80	16	50	70	4	0	24	1.06
43653004--43653081	24	3.2	24	87	3	104	35	16	16	30	1.92
43657357--43657391	12	2.8	12	86	4	52	62	0	8	28	1.24
43670149--43670213	34	1.9	34	93	0	112	36	3	21	38	1.69
43672414--43672462	25	2.0	25	83	0	62	22	22	16	38	1.92
43679470--43679506	17	2.2	17	95	0	65	48	5	18	27	1.70
43684916--43685339	229	1.8	230	91	0	697	36	19	14	29	1.91
43689043--43689069	13	2.1	13	100	0	54	55	0	29	14	1.40
43693913--43694116	93	2.2	94	80	7	220	35	17	17	29	1.93
43694033--43694516	186	2.6	185	87	1	655	35	15	20	28	1.93
43694437--43694994	237	2.4	237	87	0	801	36	17	19	25	1.94
43697900--43697962	31	2.1	30	82	8	74	53	1	1	42	1.19
43698397--43698498	51	2.0	51	98	0	195	37	6	7	48	1.59
43706735--43706768	6	5.7	6	100	0	68	29	0	0	70	0.87
43708495--43708619	60	2.1	60	100	0	250	28	12	11	48	1.74
43711687--43711728	16	2.6	16	81	11	50	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43711687--43711737	15	3.5	15	81	10	52	50	1	0	47	1.12
43711685--43711931	120	2.0	120	95	0	440	48	5	2	43	1.38
43711802--43711848	16	3.0	16	78	12	53	51	2	0	46	1.13
43711735--43711922	61	3.1	61	68	19	176	48	6	2	42	1.44
43711916--43711955	16	2.4	16	84	15	55	55	0	2	42	1.13
43711903--43711955	17	3.2	17	77	20	58	52	1	3	41	1.30
43711697--43711978	120	2.4	119	88	5	365	50	4	2	42	1.36
43711938--43712196	47	5.7	46	68	18	175	47	2	3	46	1.32
43711998--43712040	13	3.2	13	78	15	52	58	0	0	41	0.98
43711801--43712286	182	2.6	185	82	11	571	48	3	2	45	1.35
43711972--43712270	91	3.3	91	91	3	494	46	2	3	46	1.34
43712074--43712139	10	7.3	9	71	23	50	45	0	4	50	1.22
43712099--43712144	18	2.7	18	86	6	60	47	2	4	45	1.34
43716454--43716627	71	2.5	71	81	3	199	29	22	22	24	1.99
43716469--43716586	35	3.3	35	68	6	94	33	22	22	22	1.98
43716572--43716698	36	3.4	36	80	8	146	32	22	22	22	1.98
43716562--43716717	76	2.1	76	86	4	217	31	21	23	23	1.98
43716604--43716717	36	2.9	39	77	12	128	34	21	21	21	1.97
43720304--43720625	159	2.0	158	98	0	626	37	24	3	34	1.71
43722033--43722158	66	1.9	66	82	6	157	36	7	12	43	1.70
43723282--43723542	90	2.9	90	81	5	294	28	21	14	35	1.93
43725235--43725297	30	2.1	30	93	0	108	57	14	3	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43725935--43725995	20	2.9	21	80	14	63	50	0	3	45	1.17
43725933--43725996	25	2.7	24	81	15	80	51	0	3	45	1.17
43728037--43728122	40	2.2	40	81	10	97	38	22	17	22	1.93
43727855--43728409	196	2.9	193	76	8	462	32	19	21	26	1.97
43728197--43728298	40	2.5	40	87	3	134	27	17	28	26	1.98
43728492--43728529	7	5.4	7	96	0	67	15	0	15	68	1.22
43728483--43728529	21	2.2	21	84	0	58	17	0	21	61	1.34
43728588--43728646	14	4.0	14	72	10	55	18	0	42	38	1.51
43728696--43728754	28	2.1	29	87	9	86	20	0	42	37	1.52
43728706--43728763	14	4.1	14	82	4	64	22	0	43	34	1.54
43728582--43728773	78	2.6	73	78	12	203	21	0	38	39	1.57
43728810--43728893	21	4.0	21	71	11	64	25	1	34	39	1.64
43728812--43728908	43	2.3	43	80	3	106	27	1	31	39	1.64
43729348--43729386	20	2.0	20	100	0	78	28	35	0	35	1.58
43731874--43731918	3	14.7	3	83	4	54	62	0	4	33	1.15
43731855--43731917	15	3.9	15	75	8	54	57	1	7	33	1.37
43733565--43733791	123	1.9	121	94	1	400	43	8	4	44	1.54
43733855--43733926	9	8.0	9	75	6	56	48	16	0	34	1.47
43733945--43734113	9	19.7	9	71	15	74	48	15	0	36	1.45
43733982--43734034	24	2.2	24	96	0	97	52	16	0	30	1.44
43734059--43734123	19	3.3	19	75	12	76	43	15	0	41	1.47
43733992--43734123	41	3.1	42	81	11	162	46	15	0	37	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43742105--43742245	44	3.3	43	82	8	155	24	15	26	33	1.95
43743999--43744073	33	2.3	33	80	11	84	20	6	8	65	1.42
43744885--43744927	19	2.4	17	77	11	50	25	9	4	60	1.47
43751990--43752023	16	2.1	17	88	5	52	64	0	2	32	1.08
43752058--43752206	76	2.0	76	97	0	280	41	9	8	40	1.68
43752276--43752330	26	2.0	26	82	6	65	36	3	1	58	1.26
43752287--43752344	26	2.2	25	79	8	62	37	5	0	56	1.21
43753705--43753766	31	2.0	32	84	9	83	54	0	3	41	1.16
43756467--43756593	41	3.1	40	77	13	132	53	9	12	24	1.68
43756488--43756593	21	5.1	21	70	8	92	53	10	11	24	1.67
43756468--43756582	61	1.9	61	83	7	153	53	9	13	24	1.69
43763822--43763864	18	2.4	18	92	3	70	25	11	13	48	1.77
43776027--43776094	32	2.2	32	97	2	129	41	17	14	26	1.88
43785780--43785905	38	3.3	38	88	3	173	34	11	18	35	1.87
43786338--43786377	20	2.0	20	90	4	64	27	12	12	47	1.77
43788937--43789051	36	3.0	36	74	17	124	53	1	3	41	1.28
43788996--43789028	17	2.0	17	88	5	50	51	0	3	45	1.16
43806391--43806601	88	2.4	87	82	5	237	35	17	9	37	1.82
43807057--43807082	13	2.0	13	100	0	52	38	0	23	38	1.55
43807117--43807181	19	3.3	19	75	12	51	29	7	1	61	1.33
43807176--43807246	24	3.2	22	84	9	99	33	4	1	60	1.25
43807647--43807712	13	5.1	13	75	14	64	36	6	19	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43807650--43807712	26	2.4	25	77	12	74	36	4	20	38	1.74
43813923--43813971	20	2.3	21	83	16	66	65	0	2	32	1.04
43814334--43829929	415	37.8	415	87	2	21277	30	16	16	36	1.91
43814334--43829929	828	18.9	830	87	2	21336	30	16	16	36	1.91
43833654--43833719	18	3.8	18	80	4	73	46	10	15	27	1.78
43834790--43835001	51	4.3	51	87	8	312	30	23	13	32	1.93
43834853--43835008	44	3.4	44	90	6	213	32	23	14	30	1.94
43834790--43835006	95	2.2	95	87	5	308	30	23	13	32	1.93
43837695--43837829	54	2.5	54	85	0	180	17	37	22	22	1.94
43838859--43838983	43	2.9	43	84	4	155	32	25	14	28	1.95
43840944--43840987	11	4.1	11	76	5	54	22	6	13	56	1.61
43840950--43840990	21	2.0	21	90	0	64	29	4	9	56	1.53
43845044--43845277	106	2.2	107	83	3	276	39	14	17	28	1.89
43845490--43845692	110	1.8	112	84	6	279	35	17	17	29	1.93
43846355--43846636	102	2.6	103	82	9	325	29	18	18	34	1.94
43850023--43850069	21	2.2	22	84	3	60	55	2	4	38	1.31
43851873--43851915	16	2.7	15	76	13	50	55	0	2	41	1.12
43854224--43854278	23	2.3	23	80	17	60	49	1	1	47	1.23
43854233--43854280	19	2.5	20	77	16	55	54	0	0	45	0.99
43857301--43857349	22	2.2	22	82	7	55	67	10	0	22	1.20
43858266--43858314	23	2.2	23	85	3	64	69	4	8	18	1.30
43859332--43859445	44	2.6	42	81	5	111	29	21	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43859198--43860735	312	4.9	312	92	0	2481	28	21	18	32	1.96
43860363--43861053	268	2.6	267	88	4	989	28	21	18	31	1.97
43860000--43861128	580	1.9	580	89	2	1741	28	20	18	31	1.96
43859198--43861003	624	2.9	620	86	5	2373	28	21	18	32	1.96
43859418--43861056	44	36.8	43	69	16	345	28	21	18	31	1.96
43858939--43861003	88	23.2	88	65	16	449	28	21	18	31	1.97
43866733--43866795	30	2.1	30	93	0	108	57	17	3	22	1.54
43867436--43867464	2	14.5	2	100	0	58	0	0	48	51	1.00
43870484--43870563	29	3.0	29	65	28	77	27	27	1	43	1.63
43870461--43870563	51	2.0	52	92	1	172	25	28	1	44	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175