genome.fa.s16.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  133  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41399167--41399210	15	2.8	16	79	3	54	25	20	34	20	1.97
41401642--41401733	10	9.0	10	71	16	57	54	1	5	39	1.31
41405576--41405730	78	2.0	77	92	1	256	29	14	8	47	1.73
41409868--41409959	42	2.2	42	86	3	123	16	35	22	25	1.94
41425586--41425699	41	2.7	41	83	2	129	28	28	18	24	1.98
41425586--41425742	43	3.7	43	79	6	151	28	27	19	25	1.98
41426895--41426923	14	2.0	15	93	6	51	51	20	0	27	1.47
41433133--41433211	26	3.0	26	79	5	79	31	20	8	39	1.83
41433352--41433386	12	2.9	12	91	0	61	14	14	0	71	1.15
41444407--41444470	32	2.0	32	93	3	112	39	12	15	32	1.85
41447658--41447759	37	2.7	38	86	4	136	31	24	9	34	1.88
41448348--41448400	19	2.7	18	78	21	54	39	15	5	39	1.70
41448430--41448473	22	1.9	24	86	9	65	40	13	2	43	1.57
41448769--41448835	33	2.1	32	82	2	80	70	4	1	23	1.14
41449065--41449113	17	2.8	17	84	6	62	26	4	2	67	1.19
41449045--41449114	18	3.9	19	77	15	69	28	4	1	65	1.20
41449132--41449163	17	1.9	17	93	6	57	15	3	0	81	0.82
41449154--41449217	18	3.5	18	71	12	67	31	6	3	59	1.38
41449148--41449293	37	3.9	36	76	15	136	32	5	2	59	1.32
41449158--41449217	17	3.4	17	70	20	59	30	6	3	60	1.39
41449213--41449264	21	2.4	22	83	3	70	34	5	1	57	1.33
41449213--41449264	22	2.4	21	81	9	61	34	5	1	57	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41449178--41449346	76	2.2	76	79	14	168	34	4	2	59	1.30
41451901--41451927	7	3.9	7	100	0	54	74	0	0	25	0.83
41456790--41456869	30	2.7	30	98	1	153	43	15	7	33	1.74
41456935--41457020	9	9.6	9	85	0	118	40	25	9	24	1.85
41457322--41457357	18	2.0	18	88	0	54	33	16	16	33	1.92
41458167--41458758	29	19.9	29	80	10	644	30	0	26	43	1.55
41458218--41458322	36	3.1	36	71	23	127	27	0	27	44	1.54
41458167--41458758	59	9.9	59	83	10	708	30	0	26	43	1.55
41460920--41460980	24	2.6	24	80	12	65	60	3	0	36	1.13
41461134--41461205	22	3.3	22	92	3	119	38	0	31	29	1.57
41469650--41469693	6	7.3	6	80	10	54	18	2	0	79	0.83
41480461--41480690	114	2.0	114	95	1	415	29	9	10	50	1.69
41480833--41480948	40	2.9	40	88	0	142	17	31	18	31	1.94
41480833--41480960	20	6.4	19	72	12	96	15	32	19	32	1.93
41480856--41480983	40	3.1	42	82	8	122	18	32	17	31	1.94
41485582--41485901	134	2.4	134	82	2	365	35	16	23	24	1.95
41485582--41485901	67	4.8	66	79	4	284	35	16	23	24	1.95
41492522--41492548	11	2.5	11	100	0	54	25	22	11	40	1.87
41502513--41502829	159	2.0	158	97	0	598	37	18	15	28	1.91
41503056--41503099	21	2.1	21	82	0	52	29	4	4	61	1.36
41503303--41503344	22	1.9	22	85	9	59	50	16	2	30	1.58
41508564--41508595	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41508596--41508851	72	3.6	72	98	0	494	26	6	24	42	1.78
41513070--41513110	3	13.7	3	100	0	82	31	0	0	68	0.90
41513111--41513366	72	3.6	72	99	0	503	27	6	24	42	1.78
41523832--41523868	18	2.0	19	89	5	58	27	5	5	62	1.39
41525313--41525537	43	5.3	43	77	5	179	27	28	16	27	1.97
41525730--41525813	43	2.0	43	82	0	105	42	11	13	32	1.80
41528906--41528956	21	2.4	22	86	3	77	41	0	33	25	1.56
41529094--41529138	23	1.9	23	86	4	63	28	6	8	55	1.56
41529925--41530005	21	3.8	21	73	11	67	39	34	0	25	1.56
41529952--41529998	15	3.3	15	85	8	62	40	31	0	27	1.57
41529777--41530374	295	2.0	301	87	6	860	42	26	2	28	1.68
41530163--41530232	22	3.1	23	78	10	65	34	41	1	22	1.63
41530198--41530232	8	4.5	8	89	7	54	40	45	0	14	1.45
41530196--41530237	15	2.8	15	88	0	57	40	40	0	19	1.51
41530198--41530253	8	7.5	8	77	22	50	41	42	0	16	1.48
41530252--41530292	7	5.7	7	83	16	57	41	29	0	29	1.56
41530256--41530301	15	3.1	15	84	3	58	41	30	0	28	1.56
41530648--41531011	41	8.9	41	85	2	419	33	29	15	21	1.94
41531043--41531170	40	3.2	40	79	3	132	24	21	18	35	1.95
41534436--41534552	36	3.3	36	82	1	137	13	11	34	40	1.82
41535141--41535215	19	3.8	19	87	6	114	37	12	14	36	1.83
41535442--41535486	23	2.0	23	81	0	54	22	0	15	62	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41535765--41535841	37	2.1	37	80	11	86	37	9	1	51	1.42
41544172--41544219	18	2.6	18	83	6	60	50	2	4	43	1.33
41544838--41544880	19	2.3	18	84	4	50	9	34	0	55	1.32
41548268--41548424	36	4.4	35	87	4	118	12	11	36	39	1.79
41548297--41548421	36	3.5	36	93	1	198	12	12	37	37	1.81
41563311--41563378	30	2.2	31	89	2	102	47	4	5	42	1.48
41573088--41573159	5	14.8	5	74	21	64	38	0	4	56	1.18
41573117--41573159	19	2.3	19	92	8	70	41	0	0	58	0.98
41573164--41573203	18	2.2	19	90	4	64	80	2	15	2	0.93
41574073--41574206	44	3.0	45	83	4	162	35	13	23	27	1.93
41579722--41579755	18	1.9	17	88	5	50	44	14	35	5	1.70
41580599--41581042	137	3.3	137	83	4	492	31	18	21	28	1.97
41580663--41581094	44	9.7	44	77	6	404	31	18	21	28	1.97
41580663--41581093	132	3.2	131	82	3	470	31	19	21	28	1.97
41580925--41581149	88	2.6	89	81	4	215	33	18	18	29	1.95
41586144--41586182	20	1.9	20	84	5	51	46	7	10	35	1.67
41588050--41588089	20	1.9	22	90	10	66	35	12	17	35	1.88
41594513--41594576	19	3.3	19	89	8	101	39	9	14	37	1.78
41594514--41594589	21	3.7	21	91	3	111	42	9	11	36	1.74
41594784--41594822	19	2.0	21	85	10	55	15	10	5	69	1.34
41595040--41595079	3	13.3	3	89	10	64	35	0	0	65	0.93
41595027--41595079	24	2.2	24	87	9	74	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41595342--41595458	51	2.3	53	81	8	136	30	5	5	58	1.44
41596186--41596220	18	1.9	18	100	0	70	51	0	5	42	1.25
41600178--41600224	19	2.5	20	80	13	55	78	4	17	0	0.90
41601763--41601943	44	4.1	44	65	8	107	32	20	22	24	1.98
41601455--41602060	132	4.7	132	87	4	881	30	20	24	24	1.98
41601499--41602017	254	2.0	254	94	1	912	30	20	24	24	1.98
41602022--41602397	44	8.8	43	73	11	256	26	21	23	27	1.99
41602019--41602480	44	10.7	44	70	17	229	27	21	23	27	1.99
41602011--41602443	217	2.0	215	92	0	722	27	21	24	27	1.99
41602791--41602866	21	3.7	21	85	7	120	42	9	11	36	1.74
41603063--41603101	19	2.0	21	85	10	55	15	10	5	69	1.34
41603304--41603360	3	19.3	3	77	16	57	29	0	1	68	1.00
41608151--41608185	14	2.5	14	90	0	52	74	0	0	25	0.82
41608160--41608186	14	1.9	14	100	0	54	66	0	0	33	0.92
41608518--41608603	40	2.2	40	93	2	147	63	3	6	25	1.35
41610465--41610494	15	2.0	15	93	0	51	66	16	0	16	1.25
41610505--41610542	13	2.8	14	80	19	53	65	7	5	21	1.38
41614219--41614617	195	2.0	197	92	3	658	35	21	3	40	1.70
41618737--41618879	76	1.9	78	85	2	200	37	3	18	40	1.67
41623306--41623366	28	2.1	30	85	11	83	21	0	18	60	1.36
41624370--41624439	23	3.0	24	63	23	58	42	20	17	20	1.89
41627855--41628029	87	2.0	87	88	2	262	34	22	10	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41628031--41628087	23	2.4	25	85	5	73	66	0	3	29	1.08
41628373--41628398	10	2.6	10	100	0	52	46	0	0	53	1.00
41628409--41628499	10	9.5	10	70	13	57	29	3	2	64	1.21
41628375--41628456	27	3.0	28	77	8	87	35	3	1	59	1.23
41628409--41628471	19	3.4	19	75	4	74	28	3	3	65	1.24
41628335--41628442	56	1.9	58	84	7	150	31	6	3	58	1.41
41628326--41628480	56	2.7	55	77	13	136	29	6	3	60	1.40
41628409--41628488	19	4.3	18	76	6	63	27	3	2	66	1.22
41628416--41628487	37	1.9	37	86	5	101	26	4	2	66	1.23
41628573--41628773	92	2.2	91	86	2	269	32	11	20	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175