genome.fa.s16.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  69  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20520291--20520324	9	3.8	9	88	0	50	47	14	11	26	1.79
20520402--20520463	19	3.2	19	84	8	81	61	4	0	33	1.17
20520401--20520463	20	3.2	20	84	8	85	61	4	0	33	1.17
20520418--20520475	18	3.2	17	78	11	53	51	5	1	41	1.34
20520856--20520895	21	1.9	21	94	0	71	55	12	12	20	1.69
20536340--20536384	14	2.9	16	87	9	58	42	8	0	48	1.34
20536338--20536384	16	2.9	16	81	12	53	42	8	0	48	1.33
20538475--20538532	27	2.1	27	93	0	98	24	29	12	34	1.91
20538464--20538592	27	4.8	27	77	4	91	25	27	12	34	1.92
20538462--20538775	54	6.1	53	70	16	171	24	25	12	36	1.91
20538611--20538665	27	2.2	23	72	22	56	25	25	12	36	1.91
20538621--20538680	27	2.2	27	93	0	102	23	28	11	36	1.90
20538631--20538696	27	2.4	27	85	5	80	24	30	7	37	1.83
20538443--20538744	148	2.0	148	94	0	532	26	25	12	36	1.91
20538705--20538776	27	2.7	27	78	2	83	25	23	11	40	1.87
20538843--20539050	27	7.7	27	78	8	176	32	22	12	32	1.92
20539768--20539792	13	1.9	13	100	0	50	32	4	24	40	1.73
20541433--20541551	41	2.9	41	77	2	114	26	17	25	31	1.97
20547736--20547760	13	1.9	13	100	0	50	32	4	24	40	1.73
20548187--20548241	24	2.2	25	78	12	60	18	1	20	60	1.46
20560014--20560165	59	2.6	57	79	7	164	26	25	13	33	1.94
20560314--20560464	53	2.9	52	85	5	189	29	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20566563--20566637	33	2.3	33	88	0	105	10	29	8	52	1.65
20566589--20566647	15	3.7	15	77	20	66	8	27	6	57	1.53
20566580--20566632	18	3.1	17	75	25	58	11	30	5	52	1.60
20566580--20566648	33	2.1	33	94	0	120	11	28	7	52	1.64
20567745--20567786	16	2.5	17	88	7	59	19	11	4	64	1.44
20567742--20567786	17	2.5	19	82	13	60	20	13	4	62	1.48
20571666--20571735	22	3.3	21	80	9	72	72	1	11	14	1.18
20573037--20573088	6	8.7	6	93	0	77	3	1	11	82	0.88
20573026--20573088	18	3.6	18	84	2	74	6	1	9	82	0.90
20579694--20579848	26	6.0	26	79	5	145	47	21	10	20	1.81
20579717--20579842	51	2.5	51	84	1	162	47	21	10	20	1.79
20585172--20585286	41	2.8	41	77	1	113	23	21	26	28	1.99
20585689--20585721	14	2.3	15	94	5	59	30	0	33	36	1.58
20585806--20585996	95	2.0	95	89	2	294	24	1	30	43	1.61
20585965--20586019	14	3.8	14	78	7	56	10	0	47	41	1.39
20585965--20586020	29	1.9	29	85	7	78	10	0	46	42	1.38
20586892--20587123	124	1.9	125	93	2	405	38	14	12	34	1.83
20591851--20592207	43	8.3	43	87	0	462	23	17	31	27	1.97
20593388--20593436	19	2.6	19	84	9	57	53	4	2	40	1.32
20593801--20593840	21	1.9	21	94	0	71	55	12	12	20	1.69
20594305--20594350	18	2.5	19	73	16	51	65	4	4	26	1.30
20594494--20594522	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20594567--20594600	17	1.9	18	88	5	52	73	8	5	11	1.24
20595883--20596025	72	2.0	72	100	0	286	39	19	11	29	1.86
20596118--20597872	178	9.9	177	87	3	2326	35	13	12	38	1.83
20597996--20598059	24	2.4	25	85	12	76	42	0	3	54	1.16
20603913--20603994	30	2.7	29	94	3	137	31	21	25	20	1.98
20603882--20603994	60	1.9	60	83	7	149	29	21	27	22	1.99
20604106--20604207	26	3.9	26	74	5	107	39	21	20	18	1.93
20604403--20604761	54	6.7	53	79	9	304	25	17	17	38	1.92
20604388--20604761	81	4.6	81	76	8	323	25	17	18	37	1.93
20604403--20604775	27	13.9	27	78	6	220	25	17	18	38	1.92
20610927--20610969	10	4.1	10	77	11	50	39	0	0	60	0.97
20614560--20614602	16	2.6	17	82	7	54	46	0	2	51	1.13
20620595--20620628	3	11.3	3	93	0	59	32	0	2	64	1.08
20628030--20628468	44	10.0	44	73	5	343	25	23	19	31	1.98
20628030--20628470	88	5.0	88	92	0	641	25	23	19	31	1.98
20644717--20644752	7	5.1	7	100	0	72	41	0	58	0	0.98
20644960--20644988	14	2.0	15	93	6	51	65	6	0	27	1.18
20645030--20645086	29	2.0	29	89	0	87	38	26	0	35	1.57
20645404--20645440	18	2.0	19	89	5	58	24	0	13	62	1.31
20654124--20654158	13	2.6	13	90	4	52	68	0	0	31	0.90
20656807--20656834	14	2.0	14	100	0	56	7	28	0	64	1.20
20656787--20656831	19	2.5	18	83	16	58	6	26	0	66	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20659791--20659900	58	1.9	56	80	14	125	43	1	4	50	1.33
20659795--20659923	57	2.2	57	81	9	136	44	1	4	48	1.32
20659878--20659954	35	2.2	37	79	11	90	45	1	2	50	1.23
20660030--20660134	44	2.5	40	76	18	106	33	30	4	31	1.78
20660040--20660137	45	2.2	45	89	5	146	34	29	5	30	1.79
20670022--20670264	46	5.5	46	69	10	173	33	19	18	28	1.96
20669892--20670392	175	2.9	175	92	0	826	32	18	19	28	1.96
20670243--20670520	129	2.2	127	90	2	441	31	19	20	29	1.97
20669891--20670524	44	14.7	43	66	11	242	32	18	20	28	1.96
20670967--20670996	11	2.7	11	89	0	51	70	0	0	30	0.88
20679375--20679408	14	2.2	16	90	10	54	79	2	0	17	0.86
20680477--20680516	21	2.0	20	85	14	55	40	2	10	47	1.50
20688767--20688815	25	2.0	25	83	0	62	38	0	16	44	1.48
20689146--20689186	18	2.3	18	87	8	57	9	24	29	36	1.87
20690179--20690207	13	2.2	13	100	0	58	34	31	27	6	1.83
20693263--20693341	25	3.2	25	73	5	63	37	18	22	20	1.94
20698109--20698154	19	2.6	18	83	10	58	32	4	13	50	1.61
20703565--20703601	15	2.6	15	83	8	51	72	0	13	13	1.11
20703648--20703776	33	3.9	33	77	8	127	55	7	26	10	1.61
20703647--20703770	17	7.7	15	70	18	70	54	6	28	10	1.59
20703648--20703772	66	1.9	67	81	8	157	54	7	27	11	1.62
20706071--20706116	19	2.6	18	83	10	58	32	4	13	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20711550--20711586	18	2.0	19	89	5	58	40	13	8	37	1.74
20713218--20713284	18	3.3	20	74	17	59	50	1	1	46	1.19
20713218--20713276	20	3.1	19	80	9	66	50	1	1	45	1.21
20713223--20713291	20	3.5	20	71	11	54	50	0	1	47	1.09
20713440--20713492	19	2.8	19	77	8	63	45	3	0	50	1.19
20713968--20714026	29	2.1	27	81	9	66	23	13	16	45	1.83
20726185--20726230	19	2.4	19	85	3	56	76	10	0	13	1.03
20730699--20730767	30	2.3	30	97	0	129	26	18	13	42	1.87
20733708--20733754	23	2.0	23	100	0	94	27	12	25	34	1.92
20737406--20737440	16	2.2	16	94	0	61	37	8	8	45	1.65
20738359--20738392	17	2.0	17	100	0	68	35	5	35	23	1.79
20739741--20740033	51	5.8	51	81	2	295	29	25	15	29	1.96
20739745--20740033	102	2.9	100	89	3	402	29	25	15	29	1.96
20757663--20757842	94	1.9	94	100	0	360	27	11	22	38	1.88
20759811--20760141	110	3.0	110	97	0	617	30	20	13	35	1.92
20770136--20770193	26	2.2	26	90	0	89	25	15	13	44	1.83
20772204--20772290	10	8.4	10	71	10	68	33	3	2	60	1.26
20772243--20772290	21	2.2	22	82	14	64	35	2	0	62	1.07
20772204--20772289	31	2.8	30	76	15	86	33	3	2	60	1.26
20773346--20773381	17	2.1	18	89	5	56	36	2	0	61	1.11
20773730--20773798	33	2.1	32	84	7	86	37	30	10	21	1.87
20774868--20774904	17	2.2	17	100	0	74	43	40	5	10	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20777650--20777677	14	2.0	14	100	0	56	78	7	0	14	0.95
20779821--20779902	43	1.9	43	87	0	119	20	20	30	28	1.98
20779930--20780134	43	4.8	42	77	9	193	26	30	17	25	1.97
20779930--20780134	85	2.4	87	78	11	219	26	30	17	25	1.97
20780490--20780581	21	4.4	21	85	0	94	4	42	17	35	1.69
20780552--20780698	66	2.2	66	86	4	199	12	29	17	40	1.87
20780573--20780721	66	2.3	66	84	4	185	14	26	18	40	1.89
20786148--20786201	16	3.2	16	81	5	63	37	0	16	46	1.48
20786148--20786266	9	14.3	9	68	19	71	38	0	17	42	1.55
20786153--20786238	34	2.6	34	79	3	86	40	1	13	44	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175