genome.fa.s16.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  171  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51471585--51471613	7	4.3	7	91	8	51	72	0	13	13	1.13
51472834--51473345	88	5.9	88	90	2	739	26	24	23	25	2.00
51472834--51473345	262	2.0	261	87	3	742	26	24	23	25	2.00
51473382--51473522	44	3.3	43	69	9	126	33	14	21	29	1.94
51473426--51473558	41	3.2	41	70	10	124	29	18	21	30	1.97
51473369--51473561	85	2.3	85	93	0	332	31	16	21	31	1.95
51473625--51473839	44	4.9	44	67	11	116	30	18	24	26	1.98
51473628--51473926	132	2.3	131	86	0	427	30	18	24	27	1.98
51475422--51475446	13	1.9	13	100	0	50	32	4	0	64	1.12
51475721--51475776	27	2.0	27	86	6	76	35	5	3	55	1.40
51475736--51475792	10	5.6	10	74	12	53	38	5	0	56	1.22
51477717--51477756	17	2.4	17	91	4	64	55	7	2	35	1.42
51484783--51484822	20	2.0	20	90	0	62	50	12	10	27	1.72
51484771--51484837	34	1.9	35	87	3	100	46	11	8	32	1.72
51484806--51484845	14	2.9	14	84	0	53	42	17	7	32	1.77
51489643--51489681	18	2.2	18	85	0	51	58	7	0	33	1.26
51489873--51489925	3	17.7	3	80	7	63	62	1	5	30	1.29
51491253--51491764	175	2.9	175	90	1	753	28	22	20	29	1.98
51491382--51491680	44	6.8	45	76	8	269	27	22	20	29	1.98
51491339--51491759	44	9.7	43	71	9	230	28	21	19	30	1.98
51491882--51492769	88	10.2	87	91	1	923	24	23	23	28	2.00
51492057--51492278	43	5.2	43	61	16	109	23	23	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51498988--51499064	3	25.7	3	86	5	111	63	1	3	31	1.20
51504267--51504307	21	2.0	21	81	18	50	21	26	19	31	1.97
51519083--51519146	3	21.0	3	90	3	92	60	0	4	34	1.17
51520381--51520558	50	3.6	50	75	13	161	21	17	24	37	1.94
51520359--51521377	96	10.5	96	91	2	1504	22	19	24	33	1.97
51529689--51529722	12	2.8	12	100	0	68	14	26	23	35	1.94
51534137--51534185	3	16.0	3	87	4	62	59	0	6	34	1.22
51538064--51538109	18	2.8	18	84	15	64	0	30	41	28	1.56
51543228--51543268	21	2.0	21	81	18	50	31	19	26	21	1.97
51546363--51546395	13	2.5	13	95	5	57	45	48	0	6	1.27
51549689--51549758	33	2.1	33	97	0	131	38	7	0	54	1.28
51551097--51551315	55	4.0	55	85	0	276	26	10	17	45	1.81
51552555--51552706	55	2.8	55	82	3	198	26	9	15	49	1.74
51553994--51554035	21	2.0	21	85	0	57	64	0	2	33	1.07
51554722--51554930	74	2.8	74	86	2	283	40	26	8	24	1.84
51554983--51555103	42	2.9	42	92	0	188	15	27	13	43	1.84
51562261--51562303	21	2.0	21	90	0	68	37	11	30	20	1.89
51562452--51562492	11	3.9	11	75	12	50	60	4	0	34	1.18
51562455--51562515	20	3.0	20	97	0	113	54	4	0	40	1.22
51569020--51569070	6	8.2	6	77	16	50	21	3	0	74	0.98
51588418--51588514	48	2.0	48	93	0	167	32	21	4	41	1.72
51589001--51589034	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51593640--51593673	17	2.0	17	94	0	59	44	50	0	5	1.26
51594097--51594177	42	1.9	42	94	0	144	46	22	11	19	1.81
51595355--51595386	14	2.3	14	100	0	64	53	9	6	31	1.58
51601219--51601536	110	2.9	110	88	2	455	33	18	17	29	1.94
51604410--51604937	125	4.2	125	95	0	930	25	18	19	35	1.95
51604941--51605097	49	3.3	49	68	12	148	21	24	24	29	1.99
51604930--51605113	91	2.0	91	95	0	332	20	22	25	31	1.98
51606252--51606297	21	2.2	21	92	0	74	26	34	10	28	1.90
51610751--51610784	17	2.0	17	88	0	50	35	0	17	47	1.48
51610977--51611291	109	2.9	109	86	5	435	34	18	18	29	1.94
51614136--51614663	125	4.2	125	95	0	930	25	18	19	35	1.95
51614667--51614823	49	3.3	49	68	12	148	21	24	24	29	1.99
51614656--51614839	91	2.0	91	95	0	332	20	22	25	31	1.98
51615981--51616026	21	2.2	21	92	0	74	26	34	10	28	1.90
51620934--51621251	110	2.9	109	87	4	446	33	19	17	28	1.95
51645367--51645396	15	1.9	16	93	6	53	56	6	10	26	1.57
51646278--51646316	13	2.9	13	84	3	51	0	17	2	79	0.84
51660565--51660785	55	4.0	55	83	0	262	26	9	17	47	1.77
51661977--51662116	55	2.5	55	83	3	201	22	9	17	50	1.75
51663149--51663523	123	3.0	123	90	1	588	29	15	22	32	1.95
51665659--51665794	46	3.0	46	98	0	263	26	27	10	36	1.89
51673319--51673500	46	4.0	46	96	0	328	25	26	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51678255--51678288	16	2.1	17	88	5	52	73	5	2	17	1.16
51678337--51678405	3	22.0	3	77	16	61	63	2	2	30	1.23
51679671--51680497	23	37.2	23	84	7	977	25	1	23	49	1.57
51679671--51680497	44	18.6	44	83	7	969	25	1	23	49	1.57
51680549--51680596	25	1.9	25	100	0	96	39	14	0	45	1.45
51681023--51681057	18	1.9	18	100	0	70	45	5	28	20	1.73
51681909--51681946	20	1.9	20	84	10	51	55	7	2	34	1.43
51682845--51682869	11	2.3	11	100	0	50	44	0	0	56	0.99
51682870--51682990	51	2.4	51	92	0	206	47	0	24	27	1.58
51683861--51683901	21	2.0	20	85	4	55	63	0	2	34	1.08
51684641--51684831	74	2.6	74	92	1	310	40	26	7	25	1.82
51684887--51684990	42	2.5	42	90	0	154	14	25	13	47	1.80
51684899--51684997	42	2.4	42	92	0	162	15	27	13	44	1.83
51684899--51685018	42	2.9	42	87	0	141	15	29	12	43	1.83
51685241--51685843	43	14.1	43	85	2	673	30	25	21	23	1.99
51685241--51685843	171	3.5	172	84	4	756	30	25	21	23	1.99
51686258--51686302	21	2.2	20	88	4	63	2	40	20	37	1.65
51686186--51686351	86	1.9	86	89	4	255	11	30	18	39	1.86
51691967--51692404	9	47.6	9	69	23	147	38	0	14	46	1.45
51691847--51692416	103	5.6	94	88	7	370	39	0	14	45	1.50
51691963--51692416	103	4.4	103	95	1	800	38	0	14	46	1.45
51691963--51692416	72	6.5	71	79	12	500	38	0	14	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51692896--51692989	47	2.0	47	89	0	143	32	22	14	29	1.94
51695443--51695483	13	3.1	14	82	6	50	46	24	7	21	1.77
51702715--51702752	20	2.0	19	90	10	60	47	5	0	47	1.24
51706436--51706479	10	4.3	10	83	13	54	68	0	0	31	0.90
51706444--51706477	12	3.0	12	87	12	54	67	0	0	32	0.91
51711750--51711792	22	2.0	22	95	0	77	9	20	27	41	1.83
51711901--51712045	43	3.4	43	84	5	177	19	19	25	35	1.95
51711901--51712065	86	1.9	86	81	4	199	22	21	24	32	1.98
51711901--51712065	43	3.8	44	77	9	110	22	21	24	32	1.98
51712033--51712195	43	3.7	43	75	12	170	30	30	18	21	1.97
51712500--51712592	21	4.4	21	79	0	96	3	39	17	39	1.65
51712496--51712599	42	2.5	42	75	7	104	2	38	18	40	1.65
51712583--51712729	66	2.2	66	84	4	181	14	27	17	40	1.89
51712605--51712752	66	2.2	66	86	4	201	15	24	18	41	1.89
51718157--51718189	16	2.1	16	94	0	57	30	0	15	54	1.41
51718228--51718425	9	22.7	9	65	16	60	38	3	14	43	1.61
51718270--51718348	34	2.3	34	80	0	86	41	1	13	43	1.53
51718348--51718500	34	4.7	34	80	9	183	37	3	10	48	1.54
51718354--51718567	31	6.9	31	77	12	208	37	3	10	48	1.55
51718443--51718593	56	2.7	56	98	0	293	39	2	11	47	1.54
51718684--51718736	24	2.2	24	96	0	97	49	3	3	43	1.38
51720207--51720244	17	2.2	17	95	0	67	39	13	36	10	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51720485--51720552	33	2.1	33	94	0	118	35	29	2	32	1.73
51720774--51720812	16	2.6	15	84	11	53	35	5	35	23	1.77
51720788--51720844	23	2.4	22	80	13	60	36	1	42	19	1.62
51720807--51720860	23	2.3	23	84	6	65	38	1	38	20	1.63
51722058--51722088	16	1.9	16	93	0	53	29	51	0	19	1.47
51722930--51723294	42	8.8	41	87	3	428	31	27	26	14	1.95
51723206--51723279	23	3.4	24	65	31	67	27	29	27	16	1.97
51729513--51729568	29	1.9	29	85	0	76	51	1	12	33	1.50
51731240--51731292	27	2.0	26	82	14	63	9	28	1	60	1.38
51742728--51742764	19	1.9	19	88	0	56	40	2	5	51	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175