genome.fa.s16.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  157  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47400188--47400253	27	2.4	27	82	0	87	31	28	24	15	1.95
47405095--47405150	27	2.1	27	93	0	94	8	32	14	44	1.76
47405323--47405352	15	1.9	16	93	6	53	26	0	0	73	0.84
47405887--47406073	36	5.0	37	75	20	144	0	32	0	67	0.91
47405937--47406075	10	14.6	10	69	22	63	0	33	0	66	0.92
47405906--47406073	38	4.2	42	79	12	178	0	32	0	67	0.91
47405914--47406014	47	2.1	49	80	15	131	0	29	0	70	0.88
47405881--47406047	79	2.2	76	88	10	243	0	31	0	68	0.89
47406028--47406083	27	2.1	27	90	6	87	0	37	0	62	0.95
47406037--47406091	26	2.1	26	83	6	67	1	36	1	60	1.18
47406112--47406181	26	2.5	30	88	11	105	45	0	8	45	1.34
47406525--47406563	21	1.9	20	89	5	60	41	0	5	53	1.23
47406639--47406704	33	2.0	33	85	5	89	48	1	7	42	1.40
47411989--47412154	43	3.8	44	82	7	189	26	16	24	31	1.97
47414758--47414929	17	9.8	16	71	18	85	45	11	12	29	1.78
47414970--47415184	35	6.1	34	73	16	127	41	12	15	30	1.83
47414756--47415187	18	25.0	18	70	14	216	44	11	13	30	1.79
47415250--47415295	9	5.1	9	94	0	83	15	0	0	84	0.62
47415286--47415322	18	1.9	19	89	10	58	35	10	10	43	1.75
47415321--47415368	15	3.0	16	80	19	64	41	12	14	31	1.83
47415424--47415471	17	2.7	18	76	23	57	41	10	16	31	1.82
47416058--47416113	24	2.3	25	90	6	96	1	23	8	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47416100--47416137	16	2.5	15	87	8	51	0	7	13	78	0.94
47416647--47416762	30	3.9	29	80	6	117	44	3	21	30	1.69
47416662--47416762	30	3.4	30	84	4	125	44	3	21	29	1.70
47416758--47416792	14	2.4	15	90	4	54	25	0	2	71	1.00
47417034--47417198	55	3.0	54	87	7	244	36	18	16	28	1.92
47417145--47417411	72	3.7	72	93	3	448	34	18	16	30	1.93
47417290--47417533	122	2.0	125	87	4	361	36	18	14	30	1.90
47417415--47418969	72	21.6	72	94	2	2590	33	18	16	31	1.93
47431758--47431839	26	3.0	27	75	12	87	43	1	2	52	1.22
47431893--47431934	18	2.6	16	82	17	52	45	0	0	54	0.99
47431893--47431927	18	2.0	18	88	5	54	45	0	0	54	0.99
47431840--47432064	120	1.9	119	93	0	387	44	1	6	47	1.38
47432013--47432047	18	2.0	17	88	5	52	45	0	0	54	0.99
47432013--47432067	15	3.4	16	80	16	53	47	0	1	50	1.11
47432001--47432316	156	2.0	157	96	0	580	48	5	3	42	1.44
47432169--47432203	18	2.0	17	88	5	52	45	0	0	54	0.99
47432439--47432474	16	2.2	16	100	0	72	38	36	0	25	1.56
47455730--47455851	23	5.3	23	86	3	174	29	23	21	25	1.99
47455730--47455851	46	2.7	46	93	0	199	29	23	21	25	1.99
47456916--47456955	21	1.9	21	89	0	62	42	12	2	42	1.56
47456915--47456965	21	2.3	23	80	10	61	39	11	3	45	1.59
47459874--47459972	40	2.5	40	79	4	114	30	26	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47460145--47460197	19	2.7	19	72	13	54	52	11	0	35	1.37
47460883--47460948	10	6.3	10	76	15	62	3	16	3	77	1.02
47460970--47460994	13	1.9	13	100	0	50	24	0	0	76	0.80
47465191--47465775	99	5.9	99	91	0	929	29	21	24	24	1.99
47465244--47465802	50	11.3	51	62	12	205	29	20	24	25	1.99
47467352--47467383	15	2.0	17	88	11	50	34	0	9	56	1.32
47471373--47471432	20	3.0	20	97	0	111	30	23	15	31	1.95
47476968--47477563	99	6.0	99	91	1	935	29	20	24	25	1.99
47477021--47477579	50	11.3	50	63	9	239	29	20	24	25	1.99
47478335--47478368	10	3.1	11	87	12	52	5	8	2	82	0.93
47479216--47479247	15	2.0	17	88	11	50	34	0	9	56	1.32
47480717--47480788	36	2.0	36	83	5	92	44	0	25	30	1.54
47480988--47481097	23	5.0	22	80	5	118	19	20	24	35	1.96
47480990--47481097	44	2.5	43	80	8	130	17	21	25	36	1.95
47481274--47481304	6	5.2	6	96	0	53	54	0	16	29	1.42
47482132--47482200	34	2.0	34	94	0	120	33	31	17	17	1.93
47484125--47484163	18	2.2	17	86	13	53	33	0	20	46	1.51
47484389--47484486	23	4.3	23	90	2	162	20	21	26	31	1.98
47484391--47484479	45	2.0	45	95	0	160	19	22	26	31	1.97
47488161--47488276	57	2.0	58	89	1	180	46	10	5	37	1.60
47490456--47490482	6	4.5	6	100	0	54	51	0	48	0	1.00
47495291--47495342	27	2.0	25	88	7	77	40	0	11	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495405--47495459	26	2.1	27	82	3	67	63	5	5	25	1.38
47497036--47497079	19	2.4	18	85	11	54	50	0	4	45	1.22
47497294--47497364	26	2.5	31	78	17	73	50	14	15	19	1.77
47499172--47499204	4	8.2	4	93	0	57	45	27	3	24	1.68
47504376--47504426	24	2.1	24	100	0	102	35	23	7	33	1.84
47507796--47507829	17	2.0	17	94	0	59	44	5	0	50	1.26
47507796--47507834	17	2.4	16	87	8	53	43	5	0	51	1.24
47507800--47507839	17	2.3	18	83	12	57	47	5	0	47	1.24
47507919--47507970	15	3.6	15	80	12	56	44	0	1	53	1.11
47507795--47508086	120	2.4	120	91	5	459	41	2	5	50	1.40
47507868--47508051	59	3.1	59	65	21	148	41	2	7	49	1.42
47508048--47508089	15	2.7	16	82	14	52	45	0	2	52	1.13
47508039--47508080	15	2.9	15	82	10	52	47	0	0	52	1.00
47508023--47508336	154	2.0	156	95	1	569	46	5	3	44	1.41
47508189--47508223	18	2.0	17	88	5	52	45	0	0	54	0.99
47508024--47508259	75	3.1	75	65	16	203	46	2	3	47	1.34
47508456--47508494	16	2.4	16	86	0	51	28	33	2	35	1.71
47508469--47508525	16	3.6	16	95	0	87	33	36	0	29	1.58
47515533--47515574	17	2.4	18	80	11	52	47	2	2	47	1.28
47522746--47522828	15	5.6	15	72	12	73	63	0	9	26	1.25
47524037--47524078	8	4.9	8	86	13	57	80	2	2	14	0.90
47527603--47527640	20	1.9	19	89	5	58	36	7	7	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47531327--47531371	21	2.1	21	95	0	81	33	8	35	22	1.85
47534894--47534934	21	2.0	21	90	0	64	19	29	21	29	1.98
47539961--47539991	5	6.2	5	100	0	62	61	0	0	38	0.96
47539986--47540047	30	2.1	31	82	11	76	38	0	8	53	1.31
47551998--47552038	20	2.0	20	85	4	55	48	12	19	19	1.80
47563705--47563755	21	2.5	20	72	12	50	47	17	5	29	1.71
47568356--47568541	93	2.0	93	100	0	372	25	8	29	36	1.86
47572869--47572927	25	2.3	25	82	8	66	30	0	3	66	1.08
47572892--47572949	26	2.3	26	82	11	75	27	1	1	68	1.08
47572893--47572948	25	2.2	26	87	6	78	25	1	1	71	1.05
47576444--47576469	2	13.0	2	100	0	52	50	0	0	50	1.00
47578252--47578302	15	3.3	15	81	8	57	52	13	1	31	1.51
47586527--47586593	28	2.4	28	94	0	116	34	22	11	31	1.90
47587754--47587826	38	1.9	38	97	0	137	35	28	10	24	1.90
47588123--47588175	21	2.6	21	82	14	58	66	0	7	26	1.18
47589637--47589784	67	2.2	68	84	6	183	53	1	6	38	1.36
47589924--47589964	20	2.0	20	86	9	57	43	9	2	43	1.50
47602988--47603015	12	2.3	12	100	0	56	46	17	21	14	1.84
47605609--47605642	14	2.4	14	95	0	59	35	17	5	41	1.74
47606847--47606998	62	2.5	62	96	0	286	47	11	5	34	1.65
47612265--47612301	18	2.1	18	94	0	65	0	24	2	72	0.97
47633454--47633485	2	16.0	2	100	0	64	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47636516--47636618	51	2.0	51	90	0	161	35	16	18	29	1.93
47637197--47637230	14	2.4	14	90	0	50	14	0	38	47	1.45
47639788--47639821	14	2.4	14	90	0	50	47	38	0	14	1.45
47640445--47640481	7	5.3	7	86	0	56	18	27	10	43	1.83
47640445--47640488	14	3.1	14	86	0	61	20	25	11	43	1.85
47640472--47640534	33	1.9	33	93	0	108	31	17	17	33	1.93
47646062--47646090	15	1.9	15	100	0	58	13	34	17	34	1.89
47654280--47654308	15	1.9	15	100	0	58	13	34	17	34	1.89
47655125--47655194	33	2.1	33	82	10	81	61	12	1	24	1.40
47656065--47658861	1000	2.8	999	94	1	4800	27	23	15	32	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175