genome.fa.s16.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  60  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17651320--17651517	20	9.9	20	68	13	95	38	17	27	16	1.91
17651320--17651501	80	2.3	80	89	3	269	38	17	28	16	1.91
17658220--17658402	51	3.6	50	86	3	242	31	28	15	24	1.95
17666033--17666063	13	2.4	13	94	0	53	19	0	0	80	0.71
17666313--17666480	50	3.4	49	73	8	151	23	17	23	35	1.96
17666319--17666782	50	9.3	50	65	6	143	23	19	23	34	1.97
17666324--17666990	100	6.7	100	83	1	746	23	19	23	33	1.97
17667120--17668054	44	19.9	44	67	16	371	27	20	18	33	1.96
17667058--17668052	142	7.0	142	93	0	1688	27	20	18	33	1.96
17670201--17670234	14	2.3	15	90	5	52	0	23	0	76	0.79
17677912--17678099	51	3.7	49	84	3	214	30	28	15	25	1.96
17682301--17682336	17	2.1	17	90	10	56	69	0	0	30	0.89
17691112--17691146	16	2.1	17	89	5	54	11	51	0	37	1.38
17701844--17701899	14	3.9	14	84	9	67	16	46	0	37	1.47
17701857--17701915	7	8.4	7	83	14	77	13	44	0	42	1.44
17701857--17701915	19	2.8	21	87	10	77	13	44	0	42	1.44
17710093--17710366	136	2.0	138	88	4	410	26	14	24	34	1.94
17710820--17710861	23	1.9	22	85	9	59	21	7	7	64	1.43
17721069--17721254	100	1.9	99	88	1	282	30	21	23	25	1.99
17721267--17721387	44	2.8	44	80	6	122	32	21	18	28	1.96
17721395--17721518	45	2.8	45	87	0	176	29	22	24	23	1.99
17723238--17723276	20	2.0	20	90	10	62	33	2	7	56	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17723279--17723320	22	2.0	21	86	9	59	23	4	4	66	1.30
17723778--17723830	27	2.0	26	82	10	63	16	3	11	67	1.35
17744013--17744101	27	3.3	27	85	0	124	40	21	16	21	1.91
17744465--17744563	28	3.5	28	95	0	171	22	20	23	34	1.97
17750126--17750306	27	6.7	27	86	2	229	45	18	14	22	1.85
17756787--17756845	23	2.4	24	77	11	57	50	0	1	47	1.11
17761089--17761304	27	8.0	27	80	3	220	43	16	16	23	1.87
17761071--17761306	81	2.9	81	82	5	255	44	15	16	24	1.86
17763841--17763887	24	1.9	25	86	4	69	38	0	36	25	1.56
17764468--17764689	27	8.2	27	87	2	320	38	22	18	20	1.93
17764642--17764723	27	3.0	27	81	10	71	35	23	18	23	1.96
17765055--17765136	28	2.9	28	94	3	137	23	20	25	30	1.99
17765055--17765165	28	3.7	29	86	8	118	23	21	25	29	1.99
17771086--17771147	22	2.8	21	73	4	52	46	14	17	20	1.83
17771189--17771306	32	3.7	31	76	7	112	38	22	16	21	1.93
17771470--17771547	24	3.3	23	85	5	102	47	26	7	17	1.75
17773314--17773356	21	2.1	21	86	4	61	65	4	4	25	1.32
17773708--17773739	6	5.3	6	100	0	64	18	34	31	15	1.93
17792944--17792968	7	3.6	7	100	0	50	16	56	0	28	1.41
17802068--17802936	27	32.4	27	83	2	944	18	18	21	41	1.91
17807006--17807150	72	2.0	72	87	0	209	33	18	15	32	1.92
17807555--17807633	40	2.0	40	92	5	133	37	2	0	59	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17807568--17807692	59	2.1	60	91	7	200	39	2	0	57	1.17
17807568--17807692	11	12.4	11	73	20	96	39	2	0	57	1.17
17807579--17807710	11	10.5	13	74	14	68	37	1	1	59	1.16
17810258--17810297	18	2.3	18	86	4	55	10	0	5	85	0.75
17810651--17810692	13	3.1	14	83	10	52	73	4	0	21	1.01
17815317--17815358	22	1.9	22	85	9	59	28	2	7	61	1.35
17817435--17817473	14	2.6	14	92	8	60	76	2	7	12	1.09
17819635--17819700	27	2.4	27	84	0	96	31	19	16	31	1.94
17826647--17826712	27	2.4	27	82	5	89	31	18	16	33	1.93
17831710--17831734	11	2.3	11	100	0	50	52	8	0	40	1.31
17840791--17840901	45	2.5	44	77	2	123	27	27	15	29	1.96
17841964--17842006	21	2.0	21	82	8	52	53	4	6	34	1.49
17847290--17848184	47	18.7	47	95	1	1468	32	8	29	29	1.86
17847290--17848184	145	6.2	143	93	2	1489	32	8	29	29	1.86
17847795--17847870	22	3.3	22	64	10	62	30	7	30	31	1.86
17848303--17848381	37	2.1	37	90	0	122	24	18	31	25	1.98
17849576--17849881	40	7.7	40	93	0	504	22	22	29	25	1.99
17853569--17854477	49	18.8	49	93	3	1461	32	8	29	29	1.87
17854596--17854674	37	2.1	37	88	0	113	24	18	30	26	1.98
17858739--17858821	35	2.4	35	89	0	121	33	18	22	25	1.96
17858831--17859077	43	5.7	43	80	2	230	24	20	20	34	1.96
17858893--17859077	87	2.1	86	82	4	221	24	21	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17859745--17859773	13	2.1	14	93	6	51	55	10	0	34	1.34
17863245--17863315	27	2.6	27	82	10	99	47	11	16	23	1.79
17864227--17864267	20	2.0	21	95	4	75	60	9	0	29	1.28
17864602--17864645	7	6.3	7	82	10	54	50	31	0	18	1.47
17864525--17864762	102	2.3	102	85	6	313	48	34	0	16	1.50
17864715--17864792	7	11.3	7	72	13	54	48	30	1	19	1.57
17864715--17864792	14	5.6	14	76	11	72	48	30	1	19	1.57
17864707--17864792	28	3.0	28	71	21	81	48	31	1	18	1.56
17865186--17865459	114	2.4	114	86	0	377	29	18	19	32	1.96
17865462--17865789	40	8.2	40	89	0	494	26	21	25	25	1.99
17869310--17870174	47	18.3	47	95	0	1397	31	8	30	29	1.88
17870293--17870371	37	2.1	37	85	0	104	25	20	30	24	1.98
17879765--17879790	11	2.4	11	100	0	52	26	7	7	57	1.54
17881495--17881543	24	2.0	24	92	0	80	32	22	18	26	1.97
17883228--17883314	40	2.2	40	95	2	158	26	28	19	25	1.99
17884527--17884605	37	2.1	37	88	0	113	25	30	18	25	1.98
17884724--17885098	47	7.9	47	94	1	633	29	29	8	32	1.87
17884724--17885098	190	2.0	188	93	1	642	29	29	8	32	1.87
17888500--17888725	40	5.7	40	88	2	328	26	28	21	23	1.99
17889937--17890015	37	2.1	37	86	4	106	27	31	16	24	1.96
17890134--17890459	47	6.9	47	94	0	553	29	30	8	31	1.87
17893935--17893998	13	4.9	13	73	7	58	35	26	7	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17894837--17894898	32	1.9	32	83	0	79	62	3	1	32	1.20
17894904--17894969	9	6.4	9	72	24	51	69	0	1	28	0.97
17894848--17895007	85	1.9	83	87	10	234	63	0	2	33	1.08
17894873--17895007	44	3.3	41	85	11	179	64	0	2	32	1.09
17894967--17894992	11	2.4	11	100	0	52	53	0	7	38	1.30
17896544--17896913	114	3.2	113	74	4	316	32	24	19	23	1.98
17897334--17897377	22	2.0	21	91	4	70	15	2	29	52	1.55
17897340--17897381	21	2.0	22	90	4	68	19	2	26	52	1.58
17897456--17897517	21	3.0	21	76	9	81	24	0	29	46	1.53
17897458--17897522	14	4.6	14	73	7	60	21	1	29	47	1.60
17897883--17897920	20	1.9	20	94	0	67	34	0	7	57	1.28
17898445--17898486	19	2.2	19	86	0	57	28	45	2	23	1.66
17900971--17901042	20	3.8	20	70	17	71	51	6	4	37	1.48
17900982--17901093	37	3.0	37	92	0	179	45	9	2	41	1.51
17901043--17901198	30	5.1	30	69	13	111	42	11	1	43	1.51
17901043--17901271	57	3.9	57	76	14	221	43	10	3	42	1.55
17900980--17901286	124	2.4	127	86	4	424	45	10	3	41	1.55
17901283--17901348	16	3.8	16	72	18	60	48	18	0	33	1.48
17901271--17901342	37	1.9	37	97	0	135	48	18	0	33	1.48
17901308--17901355	25	1.9	25	91	0	78	45	18	0	35	1.50
17901320--17901367	25	1.9	25	86	0	69	41	20	0	37	1.53
17901387--17901468	9	9.1	9	70	19	55	43	23	1	31	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17901414--17901468	25	2.2	25	83	0	65	43	23	1	30	1.64
17903122--17903167	21	2.2	21	96	0	83	30	15	47	6	1.70
17903604--17903796	43	4.5	42	74	7	183	28	18	28	24	1.98
17903522--17903796	43	6.5	42	70	9	173	31	18	26	24	1.98
17903522--17903796	86	3.2	85	77	4	225	31	18	26	24	1.98
17908277--17908333	26	2.2	26	100	0	114	59	7	7	26	1.49
17908331--17909747	28	48.4	28	85	8	1727	26	0	24	48	1.52
17908331--17909747	175	8.1	176	91	4	1785	26	0	24	48	1.52
17908332--17909747	406	3.5	406	90	5	1148	26	0	24	48	1.52
17909825--17909873	25	1.9	25	87	4	71	40	16	2	40	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175