genome.fa.s16.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  54  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15772004--15772046	20	2.1	21	82	4	52	32	2	6	58	1.38
15774532--15774561	6	5.0	6	100	0	60	0	33	16	50	1.46
15775558--15775597	16	2.5	16	84	11	55	40	2	30	27	1.70
15775844--15775912	15	4.5	15	77	10	59	60	0	1	37	1.06
15791909--15791943	14	2.6	14	90	4	54	31	5	0	62	1.18
15792577--15792680	44	2.3	44	79	6	120	36	2	5	54	1.39
15792602--15792654	17	3.2	16	82	12	54	43	0	1	54	1.11
15793355--15793395	20	2.0	20	86	9	57	31	4	2	60	1.30
15795511--15795581	31	2.3	31	90	7	110	33	15	8	42	1.77
15797232--15797265	18	1.9	18	88	5	52	35	8	0	55	1.31
15797345--15797482	72	1.9	70	81	7	161	33	17	10	39	1.83
15797514--15797796	79	3.6	79	83	1	350	31	16	12	38	1.87
15797764--15798236	84	5.7	84	85	7	585	30	11	12	45	1.77
15797828--15798236	160	2.5	162	87	6	571	31	10	11	46	1.74
15800434--15800471	19	2.0	19	94	0	67	42	18	21	18	1.90
15803833--15803859	13	2.1	13	100	0	54	48	29	0	22	1.51
15804718--15804763	16	2.9	16	78	12	51	45	0	2	52	1.13
15804658--15804860	107	1.9	107	95	0	370	42	1	5	49	1.36
15804824--15804866	16	2.6	17	83	16	56	44	0	0	55	0.99
15804992--15805101	45	2.6	44	81	11	133	31	28	5	34	1.80
15805082--15805149	16	4.2	16	92	0	109	35	38	0	26	1.57
15813216--15813259	23	1.9	23	85	0	61	29	6	20	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15825216--15825362	58	2.5	61	79	10	169	55	4	1	38	1.30
15827233--15827282	24	2.1	24	85	7	66	66	8	8	18	1.42
15828300--15828337	6	6.5	6	90	6	60	84	0	13	2	0.73
15828297--15828337	11	3.6	11	90	6	64	82	0	14	2	0.76
15828297--15828337	17	2.4	17	92	8	66	82	0	14	2	0.76
15830593--15830771	85	2.1	84	90	3	279	34	25	18	21	1.96
15830634--15830771	43	3.2	43	78	10	165	35	25	18	21	1.95
15837595--15837892	159	1.9	159	89	0	470	24	18	17	39	1.92
15842221--15842268	19	2.6	18	77	9	51	56	2	14	27	1.50
15843614--15843680	26	2.5	26	76	7	73	38	1	1	58	1.17
15843949--15844419	79	5.7	81	76	9	305	31	14	12	40	1.84
15844054--15844358	79	3.9	79	83	6	377	31	14	11	42	1.82
15844299--15844582	86	3.3	87	85	3	360	32	13	11	41	1.81
15844338--15844698	86	4.2	86	83	5	322	32	11	10	44	1.75
15844299--15844663	173	2.1	172	80	7	402	32	12	10	43	1.78
15855090--15855114	11	2.3	11	100	0	50	0	16	0	84	0.63
15863290--15863422	30	4.2	33	75	15	104	30	23	22	24	1.99
15863331--15863419	30	3.0	30	85	8	128	28	23	23	24	2.00
15863328--15863410	28	2.9	29	87	7	116	28	25	22	22	1.99
15863519--15863601	26	3.2	26	77	0	94	43	22	16	16	1.88
15863776--15864026	81	3.1	82	81	8	282	18	18	19	44	1.87
15863776--15864026	27	9.3	27	81	8	253	18	18	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15865863--15866031	72	2.3	73	93	1	295	28	27	26	17	1.97
15867140--15867220	24	3.3	24	77	13	76	40	22	19	17	1.91
15867345--15867391	25	1.9	25	91	4	78	42	21	19	17	1.89
15871411--15871832	214	2.0	214	97	0	790	37	16	10	36	1.83
15880477--15880512	17	2.1	17	89	0	54	8	19	13	58	1.61
15882937--15882965	14	2.1	14	100	0	58	24	20	6	48	1.74
15884957--15884984	14	2.0	14	100	0	56	42	0	21	35	1.53
15889093--15889119	2	13.5	2	100	0	54	51	0	0	48	1.00
15899934--15899990	26	2.2	26	87	6	80	42	8	19	29	1.81
15908340--15908383	23	2.0	22	86	4	61	15	2	2	79	0.93
15913767--15913814	25	1.9	25	91	0	78	77	0	20	2	0.88
15913766--15913816	14	3.9	13	75	17	52	78	0	19	1	0.85
15914081--15914302	108	2.1	108	86	3	304	25	15	9	49	1.75
15915098--15915472	50	7.5	50	77	0	401	32	21	19	26	1.97
15915077--15915508	100	4.3	100	92	0	679	31	21	21	26	1.98
15915077--15915559	50	9.7	50	72	4	339	30	21	21	26	1.98
15915077--15915546	150	3.1	149	74	3	451	30	21	21	26	1.98
15915783--15915928	44	3.3	44	75	0	139	33	21	20	23	1.97
15915802--15915955	44	3.5	44	74	2	139	31	20	20	27	1.97
15916025--15916144	44	2.8	44	85	3	145	30	22	21	25	1.99
15916075--15916178	44	2.4	44	86	3	138	27	20	21	30	1.98
15916970--15917007	20	1.9	20	89	10	60	81	13	5	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15923810--15923991	94	1.9	93	87	1	265	38	6	18	36	1.76
15925528--15925552	13	1.9	13	100	0	50	64	4	0	32	1.12
15930312--15930363	3	17.3	3	95	0	95	65	0	1	32	1.04
15930362--15930393	3	10.7	3	100	0	64	34	0	31	34	1.58
15930944--15931000	23	2.5	23	82	0	60	10	17	0	71	1.12
15930979--15931011	16	2.1	15	94	5	57	24	3	0	72	0.98
15937943--15938017	26	2.8	27	80	13	75	66	10	6	16	1.42
15938178--15938204	13	2.1	13	100	0	54	33	22	0	44	1.53
15941362--15941710	123	2.8	124	92	0	592	29	16	21	33	1.95
15945706--15945884	27	6.6	27	82	5	182	28	27	15	27	1.96
15946432--15946456	13	1.9	13	100	0	50	32	16	20	32	1.94
15964524--15964563	20	2.0	20	100	0	80	30	15	25	30	1.95
15965495--15965624	43	3.0	43	86	0	197	20	16	27	35	1.94
15965621--15965722	44	2.3	44	82	0	123	19	16	25	38	1.92
15969948--15970077	43	3.0	43	85	0	188	20	16	27	34	1.95
15970074--15970175	44	2.3	44	82	0	123	19	16	25	38	1.92
15974743--15974798	8	7.1	8	77	4	51	58	5	1	33	1.31
15974740--15974828	35	2.6	34	82	5	101	60	4	2	32	1.29
15975324--15975506	50	3.7	48	76	5	188	26	22	18	31	1.97
15975303--15975500	98	2.0	98	90	1	308	27	21	19	31	1.97
15975324--15975530	50	4.2	48	72	10	159	28	22	19	30	1.98
15975802--15975940	45	3.1	45	72	6	140	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15975703--15975959	88	2.9	88	80	4	295	27	24	19	28	1.99
15977191--15977245	7	7.9	7	80	15	69	14	18	0	67	1.24
15981235--15981412	27	6.6	27	82	3	187	26	15	29	28	1.96
15981236--15981391	82	1.9	81	85	3	215	26	15	29	28	1.96
15981232--15981412	82	2.2	81	81	2	211	27	15	28	28	1.96
15986549--15986726	27	6.6	27	82	3	178	28	29	15	26	1.96
15986570--15986725	82	1.9	81	85	3	215	28	29	15	26	1.96
16006168--16006315	45	3.3	45	81	5	183	31	18	23	26	1.98
16006141--16006308	89	1.9	89	87	2	248	27	19	23	29	1.98
16006141--16006315	44	3.9	45	76	6	160	29	18	23	29	1.98
16010303--16010412	44	2.5	44	86	0	166	35	25	20	18	1.95
16010401--16010530	43	3.0	43	82	0	179	36	26	15	21	1.93
16014748--16014855	44	2.5	44	89	0	171	35	26	20	17	1.95
16014846--16014975	43	3.0	43	86	2	181	33	25	18	22	1.96
16018772--16018810	20	2.0	20	94	0	69	48	0	2	48	1.15
16021717--16021760	23	1.9	22	82	17	54	36	25	0	38	1.56
16021805--16021893	45	2.0	45	93	0	151	32	23	17	25	1.97
16021904--16022090	51	3.7	51	76	3	207	32	27	16	24	1.96
16021902--16022086	101	1.8	101	89	3	291	32	27	16	23	1.96
16023552--16023647	35	2.7	35	83	0	129	28	23	15	32	1.95
16027479--16027535	21	2.7	21	88	0	78	71	5	5	17	1.23
16030123--16030331	40	5.4	40	77	11	211	17	30	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16030135--16030199	20	3.2	20	69	16	62	16	35	13	33	1.89
16030168--16030235	33	2.1	33	97	0	127	17	30	17	33	1.94
16030228--16030281	19	2.8	20	74	5	56	14	31	20	33	1.93
16035861--16035925	20	3.2	20	68	14	53	16	35	18	29	1.93
16035830--16036088	79	3.3	77	87	2	365	18	30	19	32	1.95
16035830--16036088	39	6.6	39	86	2	358	18	30	19	32	1.95
16035942--16036002	19	3.2	20	68	15	56	18	32	19	29	1.95
16035830--16036088	118	2.2	118	88	2	378	18	30	19	32	1.95
16037466--16037635	40	4.3	40	83	0	198	25	30	21	23	1.99
16037464--16037635	80	2.2	80	84	1	229	25	30	20	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175