genome.fa.s16.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  37  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10080481--10080544	32	2.0	32	100	0	128	46	21	3	28	1.66
10083968--10083999	13	2.5	13	95	5	57	71	0	0	28	0.86
10084473--10084545	19	3.8	19	96	0	137	36	16	9	36	1.81
10085347--10085439	32	2.9	32	84	6	125	29	35	19	16	1.93
10090353--10090387	3	11.7	3	100	0	70	68	0	0	31	0.90
10090890--10090955	18	3.5	19	82	12	75	37	1	0	60	1.06
10090894--10090955	20	3.3	18	84	6	79	37	1	0	61	1.06
10091244--10091292	19	2.7	18	83	3	62	20	4	0	75	0.96
10092118--10092329	106	2.0	106	93	0	361	40	16	21	21	1.91
10095946--10096138	97	2.0	95	94	4	343	46	11	19	21	1.82
10100532--10100922	196	2.0	194	86	4	545	43	14	14	26	1.84
10102083--10102188	35	3.0	34	81	9	115	33	17	23	24	1.96
10102089--10102194	36	2.9	37	84	6	121	34	18	24	21	1.96
10104692--10104741	18	2.6	19	77	22	52	46	0	2	52	1.12
10104757--10104797	13	3.0	14	82	10	50	53	2	0	43	1.13
10107631--10107684	16	3.4	16	92	0	90	37	3	33	25	1.74
10107666--10107759	44	2.1	44	80	9	111	31	5	27	35	1.79
10111385--10111437	18	2.9	18	82	0	70	24	20	15	39	1.91
10111414--10111464	25	2.0	25	84	0	66	21	13	21	43	1.87
10111813--10111874	20	3.1	20	81	4	72	11	25	19	43	1.84
10112114--10112283	43	3.9	43	84	7	193	20	14	22	42	1.88
10117802--10117836	19	1.9	18	88	11	54	45	5	11	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10118230--10118276	22	2.1	22	92	0	76	36	17	19	27	1.93
10118240--10118334	23	4.2	22	86	6	111	33	14	21	30	1.93
10134832--10134857	7	3.7	7	100	0	52	42	11	0	46	1.40
10143240--10143280	9	4.6	9	90	0	64	31	2	7	58	1.38
10150460--10150505	20	2.3	20	88	0	65	23	28	28	19	1.98
10154561--10154594	16	2.1	16	94	0	59	11	11	14	61	1.56
10159991--10160135	10	14.1	10	74	9	53	37	2	0	60	1.08
10159981--10160118	40	3.4	40	84	10	158	34	2	0	63	1.06
10160020--10160134	10	11.3	10	72	15	85	38	0	0	60	1.03
10165119--10165155	15	2.6	14	88	12	58	35	0	16	48	1.46
10165406--10165450	20	2.2	20	80	0	54	42	2	13	42	1.56
10167061--10167132	24	3.0	24	81	6	83	27	13	15	43	1.85
10167095--10167132	18	2.1	18	90	0	58	31	13	15	39	1.86
10167105--10167147	18	2.4	18	80	0	50	30	13	18	37	1.90
10170996--10171032	18	2.1	18	100	0	74	21	5	24	48	1.71
10173388--10173423	16	2.2	16	100	0	72	25	0	36	38	1.56
10173404--10173494	45	2.0	45	85	2	121	27	6	28	37	1.82
10173659--10173693	18	2.0	17	94	5	61	51	0	0	48	1.00
10173546--10173861	156	2.0	157	93	0	544	42	3	5	48	1.42
10173795--10173834	15	2.7	15	88	7	55	45	5	0	50	1.23
10173904--10173984	26	3.0	27	74	13	78	51	2	1	44	1.22
10177701--10177980	93	3.1	93	63	22	243	40	8	6	44	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10177607--10177976	176	2.1	176	100	0	740	40	7	6	45	1.58
10181090--10181242	82	1.9	82	87	2	227	36	28	18	15	1.92
10181034--10181266	41	5.7	41	72	13	142	37	28	17	16	1.92
10186572--10186660	29	3.0	29	70	6	72	28	7	10	53	1.62
10188482--10188521	17	2.4	17	95	0	71	7	32	0	60	1.25
10197204--10197251	21	2.2	21	96	3	87	56	14	16	12	1.68
10197746--10197790	22	2.0	23	82	4	56	37	26	15	20	1.92
10205421--10205453	15	2.1	16	88	5	50	42	3	3	51	1.32
10237807--10238395	47	12.6	47	87	6	822	32	8	29	29	1.86
10237807--10238395	96	6.3	96	87	8	847	32	8	29	29	1.86
10237925--10237998	36	2.1	36	97	0	139	31	10	33	24	1.90
10252286--10252314	13	2.1	14	93	6	51	75	6	6	10	1.17
10252979--10253103	59	2.1	59	96	1	232	27	18	20	34	1.95
10255833--10255929	21	4.8	19	71	9	59	39	15	29	15	1.88
10255721--10255929	41	5.1	41	83	0	274	37	16	29	16	1.91
10256114--10256151	17	2.2	17	86	9	51	42	23	0	34	1.55
10268457--10268525	32	2.2	32	92	2	113	23	7	30	39	1.82
10277522--10277873	138	2.6	137	91	0	571	44	5	8	41	1.58
10277923--10278018	39	2.4	39	82	5	113	37	19	21	20	1.94
10278061--10278233	41	4.2	41	82	10	192	23	17	23	35	1.96
10278061--10278233	82	2.1	82	85	2	231	23	17	23	35	1.96
10279061--10279086	8	3.2	8	100	0	52	11	11	11	65	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10280337--10280376	21	2.0	21	90	5	64	57	5	0	37	1.21
10281360--10281390	16	1.9	16	100	0	62	35	12	12	38	1.82
10282366--10282403	18	2.1	19	90	5	60	63	0	0	36	0.95
10282422--10282694	43	6.3	43	76	6	223	22	18	27	31	1.97
10282466--10282695	86	2.6	88	80	5	263	23	19	26	30	1.98
10282992--10283138	75	2.0	75	90	5	235	31	14	7	46	1.72
10283689--10283721	17	1.9	17	88	11	50	33	6	27	33	1.81
10286706--10286774	30	2.3	30	82	5	77	36	15	23	24	1.94
10286736--10286834	30	3.3	30	77	5	101	41	13	25	20	1.88
10300880--10301072	50	3.8	50	92	0	314	25	22	31	20	1.98
10309661--10309707	22	2.2	21	84	3	58	70	6	2	21	1.20
10310512--10310542	14	2.2	14	100	0	62	6	16	45	32	1.72
10315638--10315668	14	2.2	14	100	0	62	6	16	45	32	1.72
10316597--10316674	40	1.9	41	81	2	95	46	5	1	47	1.33
10316794--10316851	25	2.3	25	87	0	80	55	1	0	43	1.10
10317034--10317081	18	2.8	17	90	6	71	45	2	2	50	1.25
10322000--10322033	17	2.0	17	88	0	50	26	17	26	29	1.98
10332020--10332083	30	2.2	30	86	8	87	32	1	7	57	1.37
10334558--10334614	21	2.7	22	72	5	55	31	22	21	24	1.98
10337132--10337187	20	2.7	21	78	13	55	46	12	3	37	1.59
10337152--10337193	21	2.0	22	85	4	59	45	16	4	33	1.69
10343398--10343433	5	7.2	5	100	0	72	80	0	0	19	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10343591--10343626	15	2.4	15	85	0	54	27	16	11	44	1.82
10354477--10354518	22	2.0	21	90	4	66	45	0	40	14	1.45
10365655--10365700	18	2.6	18	85	0	56	36	10	23	28	1.89
10374483--10374521	12	3.5	11	86	10	53	17	2	0	79	0.84
10393988--10394037	17	2.9	17	90	0	82	14	26	40	20	1.90
10394096--10394126	11	2.8	11	95	0	53	3	19	22	54	1.58
10397464--10397519	6	9.2	6	94	2	85	16	21	0	62	1.32
10397602--10397640	19	2.1	19	85	0	51	41	15	17	25	1.89
10398392--10398421	5	6.2	5	92	7	53	80	0	20	0	0.72
10398392--10398421	9	3.2	9	90	9	51	80	0	20	0	0.72
10399548--10399631	43	2.0	43	90	0	132	53	0	21	25	1.46
10400927--10401035	49	2.2	49	86	1	157	44	5	24	24	1.75
10409168--10409214	22	2.1	22	81	14	53	21	23	4	51	1.65
10412724--10412757	16	2.1	16	88	0	50	50	0	2	47	1.16
10415873--10415953	30	2.7	30	90	0	126	25	20	30	22	1.98
10415873--10415967	30	3.2	30	80	5	104	25	20	29	25	1.99
10419679--10419731	14	3.9	14	77	5	54	62	0	1	35	1.06
10421488--10421543	28	2.1	27	86	6	78	41	10	0	48	1.38
10421748--10421804	19	3.0	20	83	16	68	33	0	1	64	1.04
10425716--10425741	11	2.4	11	100	0	52	46	0	0	53	1.00
10428148--10428190	20	2.2	20	86	0	59	39	6	11	41	1.68
10428243--10428310	16	4.2	16	90	7	102	27	0	33	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10428243--10428310	32	2.1	32	94	0	118	27	0	33	38	1.57
10428447--10428749	157	1.9	157	93	0	525	43	3	4	47	1.43
10429629--10429658	13	2.3	13	100	0	60	60	13	6	20	1.55
10446569--10446687	54	2.2	54	83	0	148	21	31	19	26	1.97
10457624--10457691	35	1.9	35	90	0	109	33	8	25	32	1.86
10458819--10458915	48	2.0	48	100	0	194	36	10	12	41	1.77
10459709--10459735	14	1.9	14	100	0	54	66	0	14	18	1.25
10460215--10460271	22	2.5	22	81	13	64	42	3	1	52	1.28
10462061--10462091	12	2.6	12	94	0	53	70	3	25	0	1.02
10472351--10472375	3	8.3	3	100	0	50	0	0	32	68	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175