genome.fa.s16.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  28  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7341478--7341541	30	2.1	30	100	0	128	51	6	12	29	1.64
7342639--7342691	18	2.8	19	77	11	56	37	0	7	54	1.29
7345482--7345523	22	1.9	22	85	9	59	23	9	33	33	1.87
7349523--7349562	19	2.0	20	90	4	64	52	0	2	45	1.14
7350328--7350362	18	2.0	17	88	5	52	54	0	5	40	1.24
7350880--7351008	35	3.7	35	80	11	99	44	10	10	34	1.73
7350882--7351007	18	7.3	17	76	15	100	45	11	10	33	1.74
7351525--7351573	7	7.3	7	73	17	50	2	18	0	79	0.83
7351505--7351573	13	5.5	13	72	16	56	1	18	0	79	0.80
7351528--7351568	16	2.5	17	84	8	57	2	17	0	80	0.82
7351502--7351569	27	2.5	26	86	11	91	1	19	0	79	0.81
7351502--7351562	29	2.2	28	88	8	90	1	19	0	78	0.83
7352003--7352070	7	9.7	7	70	10	50	4	14	4	76	1.10
7352003--7352082	13	5.8	13	73	8	61	3	15	6	75	1.15
7352014--7352070	20	2.8	20	69	12	53	5	12	5	77	1.11
7352425--7352492	30	2.3	29	80	12	75	41	8	16	33	1.79
7352906--7353677	75	10.1	76	83	7	872	35	19	17	27	1.94
7354546--7354575	8	3.8	8	95	0	51	6	0	3	90	0.56
7358130--7358178	24	2.0	25	88	4	73	40	8	6	44	1.59
7362399--7362518	16	7.2	16	72	19	59	45	9	10	35	1.71
7362415--7362502	18	5.1	17	76	12	81	44	9	10	36	1.70
7362443--7362525	34	2.4	36	86	8	109	48	7	9	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7362444--7362519	18	4.4	17	73	15	66	46	7	10	35	1.68
7363023--7363081	9	6.6	9	80	7	66	0	16	0	83	0.66
7363022--7363088	20	3.3	19	80	15	73	0	16	0	83	0.64
7363018--7363090	29	2.5	28	84	4	92	0	17	0	82	0.68
7363018--7363090	13	5.3	13	76	16	67	0	17	0	82	0.68
7363018--7363090	21	3.6	19	77	14	74	0	17	0	82	0.68
7363389--7363422	17	2.0	17	88	11	52	0	29	0	70	0.87
7363501--7363571	13	5.2	13	74	12	61	1	12	8	77	1.05
7364190--7364296	53	2.0	53	92	3	180	38	12	10	39	1.77
7367351--7367433	33	2.5	33	76	11	87	51	4	3	39	1.40
7382144--7382168	12	2.1	12	100	0	50	40	44	16	0	1.47
7388940--7389511	86	6.6	87	81	5	568	29	16	25	29	1.97
7388940--7389518	44	13.3	44	81	6	565	29	16	25	29	1.97
7398032--7398086	27	2.0	28	82	10	69	69	3	27	0	1.05
7416853--7417426	43	13.3	44	82	4	584	28	16	25	29	1.96
7416853--7417389	130	4.2	127	82	8	599	28	16	25	29	1.97
7426773--7426861	37	2.3	41	80	14	109	46	1	20	32	1.58
7430146--7430205	9	6.4	9	74	14	50	20	1	0	78	0.84
7430142--7430205	10	6.9	9	73	18	51	21	1	0	76	0.87
7430144--7430177	17	2.0	17	88	0	50	17	0	0	82	0.67
7430152--7430211	28	2.1	27	87	6	75	28	1	0	70	0.97
7430152--7430211	30	2.1	29	90	6	95	28	1	0	70	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7431421--7431460	20	2.0	20	90	0	62	30	10	10	50	1.69
7431550--7431593	20	2.2	20	87	4	61	34	6	4	54	1.47
7432634--7432673	17	2.5	16	88	8	55	52	10	12	25	1.70
7434470--7434499	14	2.1	14	93	0	51	36	10	43	10	1.72
7438405--7438504	42	2.4	42	84	0	110	20	30	26	24	1.98
7439538--7439563	13	2.0	13	100	0	52	53	23	0	23	1.46
7447886--7448453	292	1.9	292	98	0	1109	26	20	18	34	1.95
7450394--7450581	99	1.9	98	91	1	304	29	18	13	38	1.89
7450478--7451144	134	5.1	134	76	6	646	31	15	11	41	1.84
7450802--7451023	120	1.9	120	83	0	291	31	13	12	42	1.82
7451046--7451270	107	2.1	107	86	1	326	30	15	14	39	1.87
7464634--7464830	98	2.0	98	96	0	367	37	24	9	28	1.87
7466084--7466108	11	2.3	11	100	0	50	60	24	8	8	1.52
7466878--7468149	132	9.8	131	89	3	1959	24	25	20	30	1.98
7466857--7468149	257	5.0	260	88	3	1932	24	24	20	30	1.99
7466882--7468149	389	3.3	389	98	0	2455	24	25	20	30	1.98
7479310--7479506	98	2.0	98	98	0	385	37	24	10	27	1.88
7480040--7480091	19	2.8	19	73	2	52	63	7	1	26	1.32
7480321--7480395	30	2.5	29	85	6	105	41	25	0	33	1.56
7480940--7480996	20	2.8	19	78	17	62	57	0	42	0	0.98
7480933--7481023	48	1.9	48	82	12	118	60	0	38	1	1.04
7480926--7481011	15	5.7	15	73	16	63	61	0	37	1	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7480963--7481022	17	3.3	20	70	25	53	58	0	41	0	0.98
7481133--7481171	16	2.4	16	86	4	51	74	0	25	0	0.82
7481133--7481179	22	2.1	23	81	18	55	76	0	21	2	0.89
7481128--7481185	27	2.1	28	80	6	64	75	0	20	3	0.94
7481913--7481977	21	3.1	21	84	8	89	43	12	9	35	1.74
7481913--7482017	20	5.4	20	72	12	62	39	9	10	40	1.72
7482042--7482098	18	3.2	18	77	5	62	24	14	10	50	1.73
7486711--7486813	54	1.9	54	86	4	145	33	6	27	33	1.83
7491458--7491531	29	2.5	29	78	14	80	47	12	13	27	1.78
7494111--7494223	58	1.9	58	83	0	145	56	7	10	25	1.58
7505981--7506027	24	2.0	24	83	8	60	21	14	29	34	1.93
7509632--7509678	21	2.1	23	84	7	62	34	29	8	27	1.87
7509668--7509740	34	2.1	34	82	5	85	41	39	4	15	1.66
7509685--7509744	27	2.2	28	87	3	86	40	41	3	15	1.63
7512024--7512154	64	2.1	64	94	1	228	28	7	9	54	1.61
7512156--7512238	28	2.8	30	76	12	100	46	9	13	30	1.75
7517559--7517590	2	16.5	2	93	6	57	53	0	0	46	1.00
7521716--7522162	222	2.0	222	99	0	876	31	25	16	26	1.96
7525490--7525524	16	2.2	16	100	0	70	22	17	17	42	1.88
7529207--7529231	13	1.9	13	100	0	50	12	24	8	56	1.62
7536390--7536423	18	1.9	18	88	5	52	79	0	14	5	0.91
7538065--7538155	47	1.9	47	93	0	155	39	24	6	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7560779--7560842	33	1.9	33	90	0	101	43	4	0	51	1.22
7562020--7562073	28	1.9	28	84	0	72	33	14	3	48	1.62
7577041--7577135	41	2.3	41	89	3	138	49	13	5	31	1.64
7580452--7580496	23	2.0	23	82	8	56	33	4	11	51	1.58
7580713--7580737	2	12.5	2	100	0	50	0	0	48	52	1.00
7581105--7581349	42	6.2	42	77	13	234	28	19	23	28	1.98
7581157--7581216	30	2.0	30	100	0	120	26	20	16	36	1.93
7581118--7581258	72	2.0	72	97	0	264	28	20	19	31	1.97
7584183--7584223	19	2.2	19	100	0	82	43	14	4	36	1.67
7588321--7588359	15	2.6	15	79	0	51	2	53	0	43	1.14
7592884--7592923	14	2.9	14	84	0	53	32	7	17	42	1.77
7592907--7592946	20	2.0	20	90	0	62	27	10	12	50	1.72
7592892--7592958	34	1.9	35	90	3	109	31	8	13	46	1.74
7592886--7592962	14	5.0	15	71	20	52	32	9	15	42	1.78
7593582--7593620	18	2.2	18	100	0	78	46	10	0	43	1.37
7594256--7594282	13	2.1	13	100	0	54	55	14	7	22	1.64
7594655--7594712	22	2.7	21	82	10	80	44	18	3	32	1.67
7596830--7596895	17	4.1	16	74	16	64	71	1	25	1	1.04
7596835--7596887	14	3.6	14	76	18	54	71	1	26	0	0.96
7602886--7602924	5	7.8	5	83	11	53	79	2	0	17	0.84
7607836--7608111	144	1.9	144	85	2	385	38	19	19	22	1.94
7609594--7609763	45	3.8	45	84	0	216	25	14	25	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7619497--7619690	105	1.9	101	80	8	221	32	17	22	27	1.96
7619631--7619707	33	2.3	33	80	10	86	33	20	22	23	1.97
7620212--7620411	101	2.0	101	98	0	391	31	4	22	41	1.74
7631256--7631412	37	4.2	37	90	0	197	34	26	19	20	1.96
7633846--7633887	20	2.1	20	86	0	57	59	0	9	30	1.29
7635822--7635858	15	2.6	14	87	8	56	45	10	5	37	1.62
7643197--7643261	30	2.2	30	84	10	82	50	0	3	46	1.17
7643697--7643742	24	1.9	24	100	0	92	21	10	21	45	1.82
7644090--7644183	46	2.0	46	85	6	127	30	7	24	37	1.83
7645599--7645647	18	2.8	17	84	6	62	24	12	16	46	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175