genome.fa.s16.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  131  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40834825--40834893	25	2.9	25	76	20	76	28	24	14	31	1.95
40835434--40835531	9	10.6	9	71	12	65	24	3	15	57	1.53
40835429--40835580	38	3.9	38	72	13	130	25	2	14	57	1.51
40838945--40838976	14	2.3	14	94	0	55	12	3	21	62	1.43
40854066--40854108	15	2.8	15	78	3	50	72	0	23	4	1.04
40865884--40865912	12	2.3	13	94	5	51	51	0	41	6	1.28
40868478--40868562	9	9.1	9	75	17	68	61	1	3	34	1.21
40868481--40868572	20	4.7	19	71	14	53	60	1	4	33	1.23
40868482--40868601	49	2.5	49	78	6	120	61	0	5	32	1.23
40869756--40869864	22	4.9	22	71	18	66	54	1	0	43	1.17
40869798--40869865	22	3.2	20	84	14	82	54	1	0	44	1.09
40869933--40869989	13	4.2	13	80	6	60	56	1	1	40	1.20
40869989--40870028	11	3.4	11	81	18	53	80	7	5	7	1.03
40869989--40870028	14	3.2	12	83	16	55	80	7	5	7	1.03
40874770--40874846	37	2.1	37	95	0	136	36	3	16	42	1.67
40875635--40875676	16	2.6	16	88	7	59	19	2	0	78	0.86
40876931--40876964	13	2.6	13	90	9	52	0	2	17	79	0.86
40879252--40879294	22	2.0	22	86	4	61	18	4	13	62	1.48
40890598--40890693	51	1.9	49	85	4	129	31	17	5	45	1.70
40890598--40890712	51	2.3	51	80	7	128	27	18	5	48	1.69
40894894--40894940	16	2.9	16	93	0	85	40	6	34	19	1.77
40894920--40895016	44	2.2	44	88	5	142	32	5	29	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40895224--40895280	15	4.1	14	74	21	57	56	0	0	43	0.99
40895229--40895425	59	3.3	58	71	17	190	54	3	1	41	1.22
40895207--40895426	118	1.9	120	95	1	399	53	3	1	41	1.25
40895207--40895387	59	3.0	61	72	15	198	52	3	1	42	1.27
40898154--40898185	17	1.9	16	93	6	55	75	0	12	12	1.06
40898873--40898900	14	2.0	14	100	0	56	42	7	42	7	1.59
40905402--40905443	22	1.9	22	85	9	59	40	11	0	47	1.40
40907660--40907714	24	2.3	23	82	14	67	34	0	0	65	0.93
40909709--40909828	41	2.9	41	83	1	141	24	19	27	29	1.98
40909723--40909841	41	2.9	41	84	1	148	22	17	27	31	1.97
40910246--40910292	14	3.3	15	79	8	53	29	0	29	40	1.57
40910279--40910319	21	2.0	21	85	4	57	17	0	41	41	1.49
40910311--40910344	14	2.2	16	90	10	54	20	0	47	32	1.51
40910311--40910357	14	3.2	15	82	11	53	21	2	44	31	1.64
40910308--40910356	23	2.2	22	89	10	73	18	2	46	32	1.60
40910573--40910625	21	2.5	22	81	9	65	20	0	39	39	1.53
40910605--40910633	15	1.9	15	100	0	58	13	0	51	34	1.42
40910276--40910812	289	1.8	292	83	7	723	29	1	26	42	1.64
40911745--40911778	14	2.5	14	95	4	61	0	61	0	38	0.96
40912967--40912994	12	2.3	12	100	0	56	32	7	10	50	1.64
40914383--40914479	43	2.3	43	87	0	131	22	13	28	35	1.92
40915037--40915064	2	14.0	2	100	0	56	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40918939--40918982	16	2.7	15	83	13	52	31	6	2	59	1.36
40922144--40922327	40	4.6	41	81	12	208	25	22	27	25	2.00
40922144--40922327	79	2.3	81	82	11	222	25	22	27	25	2.00
40922196--40922360	79	2.1	79	82	8	194	26	21	27	24	1.99
40930083--40930266	40	4.7	40	82	8	209	26	22	26	25	2.00
40930135--40930299	79	2.1	79	82	8	194	26	21	27	24	1.99
40934495--40934529	8	4.5	8	92	7	63	0	14	0	85	0.59
40934495--40934529	15	2.2	16	95	5	63	0	14	0	85	0.59
40939784--40939901	57	2.1	58	85	1	157	45	7	17	28	1.76
40947000--40947065	21	3.1	21	78	8	80	27	28	21	22	1.99
40952025--40952152	41	3.1	41	78	2	141	25	28	23	22	1.99
40954597--40954671	37	2.0	37	97	0	141	16	14	24	45	1.84
40956049--40956107	21	2.8	21	78	0	55	18	38	18	23	1.93
40956145--40956170	11	2.4	11	100	0	52	30	0	0	69	0.89
40959133--40959165	16	2.0	17	88	5	50	27	3	18	51	1.60
40965327--40965359	16	2.1	16	88	5	50	72	3	9	15	1.21
40965390--40965427	16	2.4	16	90	0	58	31	0	34	34	1.58
40965406--40965500	44	2.1	45	88	1	138	34	5	26	33	1.79
40965409--40965515	44	2.6	40	73	16	117	36	5	27	30	1.80
40965661--40965695	18	2.0	17	88	5	52	54	0	0	45	0.99
40965548--40965862	155	2.0	157	96	1	589	44	3	4	47	1.40
40965796--40965837	15	2.7	16	82	14	52	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40965805--40965846	15	2.9	15	82	10	52	52	0	0	47	1.00
40965794--40966091	120	2.5	121	91	4	469	50	5	2	42	1.38
40965915--40965966	15	3.6	15	80	12	56	53	1	0	44	1.11
40966139--40966282	47	3.1	46	67	16	127	51	4	1	43	1.29
40966034--40966314	91	3.0	93	82	9	304	49	3	2	44	1.33
40966107--40966314	91	2.3	91	90	2	310	48	3	2	45	1.35
40966088--40966274	44	4.1	43	70	16	128	49	3	2	44	1.30
40966157--40966295	47	3.0	47	69	17	146	50	4	1	43	1.30
40967713--40967750	11	3.5	11	100	0	76	50	18	7	23	1.73
40975423--40975489	34	1.9	35	87	3	100	44	14	8	31	1.76
40977205--40977246	19	2.2	19	83	8	50	59	0	2	38	1.10
40977486--40977603	56	2.1	58	82	7	143	27	6	4	61	1.41
40977589--40977613	13	1.9	13	100	0	50	24	8	0	68	1.16
40977586--40977635	21	2.4	20	87	9	73	30	8	0	62	1.24
40977578--40977625	21	2.3	21	92	0	78	29	6	0	64	1.18
40977692--40977718	12	2.2	12	100	0	54	14	7	0	77	0.97
40977728--40977943	88	2.4	89	84	5	283	31	8	22	37	1.85
40978033--40978090	30	1.9	29	82	6	71	17	15	6	60	1.56
40983839--40983921	43	1.9	44	85	7	116	44	3	1	50	1.27
40989355--40989398	22	2.0	23	90	4	72	61	0	6	31	1.22
40989812--40989870	3	19.0	3	83	13	75	62	0	5	32	1.17
40991430--40992633	45	27.3	45	80	5	1118	29	22	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40991402--40992676	89	14.4	89	79	6	1101	29	22	15	31	1.95
40991429--40992676	134	9.4	133	82	6	1138	30	22	15	31	1.95
40991400--40992628	222	5.6	220	79	7	923	29	22	15	31	1.95
40993966--40994023	13	4.3	12	78	20	53	13	20	0	65	1.26
40993966--40994023	14	4.3	13	80	8	62	13	20	0	65	1.26
40993966--40994034	20	3.4	20	77	18	72	14	21	0	63	1.30
40999273--40999315	3	14.0	3	95	4	77	65	0	2	32	1.06
41006858--41006893	17	2.0	19	89	10	58	38	0	0	61	0.96
41010120--41010154	11	3.3	11	84	8	54	11	11	11	65	1.47
41012624--41012649	11	2.4	11	100	0	52	0	15	0	84	0.62
41016032--41016125	20	4.8	20	69	12	70	40	0	3	56	1.15
41016014--41016147	57	2.3	57	87	3	189	44	0	2	52	1.21
41021494--41021522	5	5.8	5	100	0	58	0	41	0	58	0.98
41021635--41021659	10	2.5	10	100	0	50	24	0	0	76	0.80
41025247--41025301	23	2.2	24	84	15	69	38	9	7	45	1.64
41025749--41025891	72	2.0	72	94	0	250	27	20	17	34	1.95
41033792--41034088	50	5.8	50	79	2	272	28	20	27	23	1.99
41040615--41040758	50	2.9	50	82	0	180	28	20	28	22	1.99
41047622--41047716	44	2.2	45	83	11	117	31	22	17	28	1.97
41048858--41048908	23	2.2	23	92	0	84	41	21	9	27	1.84
41048944--41048988	22	2.0	22	91	0	72	51	0	22	26	1.49
41051886--41051986	45	2.2	44	84	3	121	37	6	1	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41052342--41052483	71	2.0	72	95	1	259	27	17	19	35	1.94
41057537--41057602	13	5.5	13	71	20	63	48	13	0	37	1.43
41057537--41057611	23	3.3	23	92	0	114	49	13	0	37	1.42
41057735--41057772	18	2.1	18	95	0	67	18	23	13	44	1.85
41068335--41068403	16	4.2	16	92	3	120	24	1	37	36	1.65
41068335--41068403	33	2.1	32	94	2	120	24	1	37	36	1.65
41068384--41068474	45	2.0	45	85	2	121	27	6	28	37	1.82
41068639--41068673	18	2.0	17	88	5	52	54	0	0	45	0.99
41068622--41069206	120	4.9	119	98	0	1100	47	6	2	43	1.42
41068622--41069206	239	2.5	239	97	0	1102	47	6	2	43	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175