genome.fa.s16.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  97  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30966991--30967286	16	17.5	16	67	19	92	29	2	19	48	1.61
30966930--30967286	34	10.2	35	73	14	197	29	2	20	47	1.63
30967114--30967186	37	2.0	37	100	0	146	30	2	16	50	1.59
30966930--30967286	9	41.9	9	71	13	213	29	2	20	47	1.63
30967283--30967707	213	2.0	213	98	0	823	41	8	9	40	1.68
30972113--30972276	41	4.0	42	82	9	135	32	24	22	20	1.98
30972058--30972235	82	2.2	82	79	5	189	31	23	23	21	1.98
30972076--30972276	82	2.4	83	78	4	185	33	23	22	19	1.97
30972158--30972295	41	3.4	42	86	7	167	35	23	22	18	1.96
30978075--30978127	17	3.1	17	88	2	79	15	45	26	13	1.82
30981785--30981860	39	1.9	39	81	0	89	46	22	3	27	1.70
30981916--30982067	66	2.3	67	87	2	207	39	20	7	32	1.80
30989420--30989634	85	2.5	86	85	3	263	37	16	20	24	1.93
30990849--30990884	6	6.0	6	100	0	72	83	0	0	16	0.65
30991378--30991425	23	2.1	23	92	0	78	39	10	18	31	1.85
30994684--30994779	50	1.9	51	82	6	124	38	5	19	36	1.75
31000388--31000598	40	5.3	40	86	2	257	28	27	20	23	1.99
31011721--31011914	27	7.2	27	78	5	151	43	19	14	22	1.87
31011742--31011914	27	6.4	27	79	4	161	45	17	15	21	1.85
31012585--31012625	17	2.4	17	95	0	73	12	19	46	21	1.82
31016973--31017022	19	2.5	20	78	15	59	74	6	2	18	1.12
31022094--31022151	27	2.1	27	84	6	73	39	22	15	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31022740--31022827	27	3.3	27	75	15	83	30	7	18	43	1.78
31024487--31024524	3	12.7	3	94	0	58	26	0	5	68	1.11
31027385--31027463	27	2.9	27	78	14	99	39	27	15	17	1.90
31027386--31027472	27	3.2	26	79	9	77	37	29	13	18	1.89
31028981--31029049	24	2.9	24	80	8	70	50	5	5	37	1.50
31032595--31032632	6	6.2	6	93	6	67	15	15	15	52	1.75
31032829--31032869	21	2.0	21	85	9	57	21	14	14	48	1.80
31035999--31036484	195	2.5	193	80	5	532	32	10	12	43	1.78
31036193--31036484	97	3.0	97	74	8	297	33	10	11	44	1.75
31036193--31036500	98	3.2	97	74	10	297	33	10	11	44	1.75
31037392--31037437	24	2.0	23	82	4	56	26	4	8	60	1.44
31037496--31037545	26	1.9	26	91	0	82	44	8	12	36	1.71
31041646--31041680	18	1.9	18	94	0	61	54	25	0	20	1.45
31045910--31046239	27	12.2	27	83	0	354	40	20	18	20	1.91
31045911--31046239	54	6.1	54	84	1	390	40	20	18	20	1.91
31046194--31046274	27	3.0	27	82	12	78	38	17	18	25	1.92
31049691--31050201	27	19.1	27	78	4	439	42	21	17	18	1.89
31049691--31050201	80	6.4	79	76	12	425	42	21	17	18	1.89
31049691--31050201	53	9.6	54	79	7	426	42	21	17	18	1.89
31052109--31052321	97	2.2	97	77	4	223	34	12	9	43	1.75
31054011--31054153	26	5.9	23	75	13	83	58	6	6	27	1.50
31054130--31054214	25	3.3	24	77	16	89	63	4	5	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31054145--31054214	28	2.6	28	80	6	74	61	5	7	25	1.44
31054034--31054283	26	9.4	26	69	14	136	60	6	5	27	1.43
31054190--31054255	33	2.0	33	82	11	82	59	6	6	28	1.46
31054336--31054424	29	3.3	24	78	20	88	67	3	4	24	1.25
31055244--31055294	16	3.1	16	83	5	57	76	0	13	9	1.02
31055687--31055731	18	2.5	18	82	7	56	40	17	4	37	1.70
31056672--31056705	17	1.9	18	94	5	61	11	44	32	11	1.77
31061978--31062025	25	1.9	25	86	0	69	29	18	16	35	1.93
31062323--31062378	18	3.1	18	79	7	60	33	19	5	41	1.74
31062323--31062388	18	3.6	18	73	22	57	36	18	4	40	1.71
31065439--31065527	31	3.0	29	77	11	90	41	15	8	33	1.79
31076164--31076233	35	2.0	35	100	0	140	20	22	20	37	1.95
31086782--31087023	50	4.7	51	77	5	179	24	26	21	27	1.99
31101476--31101510	15	2.3	15	90	0	52	22	5	5	65	1.36
31107618--31107693	38	2.0	38	97	0	143	26	25	14	34	1.94
31109982--31110028	18	2.6	17	81	15	51	19	2	2	76	0.99
31114015--31114064	13	3.7	13	78	21	50	26	6	0	68	1.13
31119141--31119194	28	1.9	28	88	0	81	29	24	29	16	1.97
31119386--31119523	32	4.4	31	73	10	118	40	19	18	21	1.92
31119514--31119570	26	2.2	26	83	0	69	33	31	22	12	1.91
31119668--31119730	23	2.7	23	87	2	81	46	25	4	23	1.72
31119714--31119766	26	2.0	26	85	3	70	33	22	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31119721--31119778	26	2.2	26	87	0	80	27	20	18	32	1.97
31119746--31120240	27	18.4	27	84	2	514	23	19	20	35	1.95
31119746--31120240	54	9.2	54	87	2	577	23	19	20	35	1.95
31125117--31125143	14	1.9	14	100	0	54	59	11	7	22	1.56
31127940--31127991	24	2.2	24	92	0	86	36	1	9	51	1.46
31139046--31139070	13	1.9	13	100	0	50	76	16	0	8	1.02
31140098--31140133	6	5.7	6	87	12	54	16	2	13	66	1.36
31140098--31140133	14	2.8	12	91	8	54	16	2	13	66	1.36
31145217--31145252	19	1.9	18	88	5	54	19	8	0	72	1.10
31148655--31148700	20	2.3	20	88	7	67	63	4	0	32	1.14
31153552--31153587	15	2.4	15	95	0	63	36	22	5	36	1.78
31155086--31155160	27	2.8	27	83	0	69	21	29	13	36	1.91
31157061--31157091	2	15.5	2	100	0	62	48	0	51	0	1.00
31162789--31162859	32	2.2	32	94	0	124	26	7	7	59	1.50
31162797--31162861	32	2.0	32	100	0	130	24	6	9	60	1.50
31168841--31169082	50	4.7	51	79	7	217	28	20	26	24	1.99
31177135--31177374	123	1.9	124	87	0	347	35	10	14	38	1.81
31187499--31187615	62	1.9	61	84	8	159	49	5	5	40	1.47
31187623--31187702	37	2.2	37	78	14	85	52	3	2	41	1.33
31188694--31188752	31	1.9	31	89	0	91	45	8	8	37	1.65
31190937--31191002	20	3.3	20	70	8	62	27	18	36	18	1.94
31190888--31191012	40	3.2	40	90	1	180	35	18	28	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31190954--31191018	20	3.2	20	64	14	53	32	16	30	20	1.95
31194228--31194275	24	2.0	24	100	0	96	37	8	8	45	1.64
31204011--31204043	10	3.4	10	83	8	50	24	0	0	75	0.80
31206872--31206915	22	2.0	23	86	8	65	50	0	6	43	1.29
31207888--31207933	24	1.9	24	86	0	65	41	8	26	23	1.83
31211738--31211762	10	2.5	10	100	0	50	0	16	0	84	0.63
31216367--31216495	50	2.6	50	88	2	179	39	13	13	33	1.84
31220166--31220209	22	1.9	24	81	9	56	27	13	13	45	1.81
31224742--31224785	20	2.1	21	87	4	63	13	0	40	45	1.44
31224710--31224776	27	2.5	26	75	15	73	16	0	37	46	1.47
31228870--31228899	15	2.0	15	100	0	60	53	13	13	20	1.72
31230403--31230465	28	2.3	27	83	5	74	33	0	3	63	1.10
31235424--31235640	41	5.3	41	90	0	335	25	27	17	29	1.98
31235988--31236028	17	2.5	17	88	7	59	41	12	2	43	1.55
31237153--31237177	13	1.9	13	100	0	50	68	24	0	8	1.16
31239361--31239400	20	2.0	20	90	0	62	27	10	12	50	1.72
31239346--31239412	34	1.9	35	84	3	91	34	8	10	46	1.70
31242838--31242940	41	2.5	42	81	9	115	26	22	20	31	1.98
31249118--31249175	22	2.7	22	89	2	82	12	8	18	60	1.57
31251693--31251734	21	2.0	21	86	9	59	42	19	11	26	1.85
31256025--31256069	20	2.2	20	84	7	56	31	6	15	46	1.72
31275348--31275503	41	3.8	41	89	6	235	28	20	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31275716--31275779	32	2.0	32	87	9	94	26	9	23	40	1.85
31281406--31281430	13	1.9	13	100	0	50	8	0	24	68	1.16
31281625--31281649	2	12.5	2	100	0	50	48	0	0	52	1.00
31282966--31283121	41	3.8	41	89	6	235	28	20	22	28	1.98
31283338--31283401	33	2.0	32	90	3	101	26	9	25	39	1.86
31283345--31283418	33	2.3	33	80	2	87	28	8	25	37	1.84
31293790--31293878	45	2.0	45	84	4	117	44	17	21	15	1.86
31295126--31295761	44	14.4	45	73	7	439	30	19	23	25	1.98
31295109--31295591	45	10.8	45	77	5	408	30	20	23	26	1.98
31295108--31295488	134	2.9	134	85	5	452	29	20	23	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175