genome.fa.s16.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  138  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42662067--42662666	264	2.3	264	89	0	914	30	19	24	25	1.98
42665750--42666041	89	3.3	89	84	1	354	28	22	22	26	1.99
42666233--42666482	85	2.9	84	74	8	250	29	20	22	28	1.98
42666279--42666401	44	2.8	45	72	1	113	30	17	23	27	1.97
42666190--42666658	173	2.7	170	81	6	507	31	20	20	28	1.97
42668048--42668194	23	6.5	22	70	18	79	34	7	4	54	1.48
42668125--42668186	21	2.8	23	81	11	76	35	6	1	56	1.35
42668076--42668289	115	1.9	116	79	10	251	34	7	4	53	1.48
42668243--42668301	24	2.4	23	77	22	59	35	1	3	59	1.24
42668432--42668458	3	9.0	3	100	0	54	33	0	0	66	0.92
42668890--42668927	20	1.9	20	100	0	76	36	10	10	42	1.74
42673634--42673661	14	2.0	14	100	0	56	35	21	0	42	1.53
42680311--42680362	18	2.8	18	91	2	77	46	0	3	50	1.20
42681348--42681380	17	1.9	17	88	11	50	57	0	18	24	1.40
42685998--42686062	33	2.0	33	93	0	112	35	13	6	44	1.69
42686251--42686286	16	2.2	16	90	0	54	77	13	0	8	0.98
42701526--42701586	32	1.9	32	83	12	81	44	4	1	49	1.33
42701706--42701766	32	1.9	32	83	12	81	49	1	4	44	1.33
42701725--42701766	20	2.1	20	86	0	57	47	0	7	45	1.30
42701864--42701916	25	2.1	25	100	0	106	49	28	3	18	1.65
42705957--42706326	27	13.7	27	80	5	185	21	17	20	40	1.91
42705965--42706326	54	6.7	54	81	2	406	20	17	20	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42705967--42706314	81	4.3	81	84	6	429	20	18	20	40	1.91
42710413--42710456	23	1.9	22	82	17	54	36	27	0	36	1.57
42710600--42710786	51	3.7	50	76	4	196	30	26	17	25	1.97
42713379--42713420	20	2.1	20	86	0	57	47	0	7	45	1.30
42714922--42715156	32	7.4	32	87	2	269	39	19	20	21	1.93
42715147--42715203	26	2.2	26	83	0	69	33	28	24	14	1.94
42715328--42715385	24	2.4	24	88	5	82	48	24	8	18	1.76
42715445--42715583	27	5.1	27	84	3	181	25	22	18	33	1.97
42715445--42715587	54	2.6	54	89	4	218	25	21	18	34	1.96
42715527--42715647	27	4.5	27	80	6	93	20	20	20	38	1.94
42723274--42723310	16	2.3	16	86	13	58	40	0	0	59	0.97
42723322--42723396	26	2.9	25	70	16	64	53	2	1	42	1.23
42723449--42723473	6	4.2	6	100	0	50	80	0	0	20	0.72
42732241--42732283	20	2.1	21	83	12	54	44	4	6	44	1.52
42736043--42736082	15	2.3	19	80	20	52	25	10	7	57	1.57
42736071--42736116	23	2.0	23	82	0	56	17	6	13	63	1.50
42740128--42740172	15	3.1	14	78	12	54	22	4	0	73	1.01
42749281--42749388	23	4.4	23	68	17	65	38	20	11	29	1.87
42749401--42749902	23	21.5	23	72	4	360	41	17	14	26	1.88
42749264--42749457	75	2.7	71	88	7	300	39	20	11	28	1.88
42749450--42749904	70	6.5	71	87	1	632	41	17	14	25	1.88
42749450--42749904	141	3.2	140	89	1	662	41	17	14	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42749450--42749904	211	2.2	211	91	1	761	41	17	14	25	1.88
42750628--42750725	28	3.5	28	94	0	160	30	25	12	31	1.92
42776491--42776613	34	3.7	31	75	13	95	29	12	13	44	1.80
42776609--42776641	17	1.9	17	100	0	66	24	15	18	42	1.88
42778895--42778923	14	2.0	15	93	6	51	72	0	13	13	1.13
42779656--42779787	28	4.7	28	84	5	176	31	11	24	32	1.90
42779656--42779787	57	2.3	56	87	8	196	31	11	24	32	1.90
42780513--42780571	23	2.6	23	84	7	68	27	20	15	37	1.92
42780547--42780831	23	12.0	22	68	18	137	25	12	18	42	1.86
42780557--42780927	94	3.9	95	92	2	568	27	12	18	41	1.87
42787221--42787352	28	4.7	28	89	1	192	31	11	25	32	1.91
42787221--42787352	57	2.3	56	89	3	203	31	11	25	32	1.91
42788087--42788145	23	2.6	23	84	7	68	27	20	15	37	1.92
42788121--42788499	23	16.0	22	67	18	176	25	12	18	42	1.86
42788131--42788595	94	4.9	94	94	1	761	26	12	18	41	1.87
42813706--42813744	20	2.0	20	85	10	53	35	10	15	38	1.81
42815312--42815347	18	2.0	18	100	0	72	11	16	38	33	1.84
42819715--42819750	9	4.0	9	92	0	63	55	2	0	41	1.14
42822668--42822726	16	3.7	16	80	8	66	49	1	0	49	1.11
42822680--42822720	21	2.0	20	85	4	55	48	2	0	48	1.14
42822669--42822782	32	3.7	32	68	20	98	49	3	1	45	1.29
42822667--42822724	5	10.7	6	72	20	56	48	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42822671--42822800	58	2.2	58	87	5	192	50	3	1	44	1.29
42834717--42834870	57	2.7	56	83	13	181	43	11	10	34	1.75
42834774--42834887	35	3.1	38	77	15	105	41	10	10	37	1.74
42834754--42834886	18	7.3	18	74	18	107	43	10	9	36	1.72
42835385--42835426	7	6.0	7	81	10	50	0	28	0	71	0.86
42835390--42835432	20	2.1	20	87	12	61	0	25	0	74	0.82
42835716--42835753	15	2.5	15	86	0	58	0	23	0	76	0.79
42835709--42835779	21	3.5	20	72	18	56	2	19	0	77	0.89
42835719--42835790	18	4.1	18	78	16	64	2	23	0	73	0.96
42835718--42835770	27	2.0	27	88	7	81	0	24	0	75	0.80
42836338--42836494	59	2.6	60	77	4	147	46	5	19	28	1.73
42836310--42836501	30	6.4	30	74	8	142	45	5	19	29	1.72
42836689--42837295	76	7.8	78	78	10	552	33	19	16	30	1.94
42836677--42837272	241	2.5	234	82	6	681	32	19	16	30	1.95
42836690--42837272	154	3.7	152	81	10	624	32	19	16	31	1.94
42849154--42849220	17	3.9	17	82	9	91	49	11	11	26	1.74
42849715--42849775	28	2.2	28	85	5	79	0	22	0	77	0.78
42850039--42850103	13	5.0	14	68	22	52	3	27	0	69	1.03
42850227--42850281	27	2.1	26	83	12	69	1	12	10	74	1.15
42853743--42853805	3	21.0	3	100	0	126	33	0	0	66	0.92
42858808--42858840	6	5.7	6	92	7	59	48	15	0	36	1.45
42861016--42861076	27	2.3	26	80	2	68	21	14	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42864472--42864503	16	2.0	16	93	0	55	40	6	0	53	1.26
42871889--42872050	81	2.0	81	89	2	245	32	17	16	33	1.92
42874607--42874645	16	2.4	17	86	8	62	30	17	5	46	1.70
42883859--42883920	30	2.1	30	100	0	124	37	30	9	22	1.86
42884726--42884756	2	15.5	2	100	0	62	0	51	0	48	1.00
42896466--42896514	24	2.0	24	96	0	89	53	12	18	16	1.73
42900360--42900385	13	2.0	13	100	0	52	38	0	7	53	1.30
42900717--42900780	27	2.4	27	82	10	85	60	1	0	37	1.06
42905698--42905744	24	2.0	24	83	8	60	57	2	2	38	1.23
42906000--42906025	12	2.2	12	100	0	52	34	7	15	42	1.75
42906012--42906059	19	2.4	20	89	6	71	37	12	14	35	1.84
42906398--42906433	3	12.0	3	87	0	54	30	2	2	63	1.22
42906552--42906595	17	2.6	17	85	3	63	40	11	0	47	1.39
42906747--42906804	30	1.9	31	86	10	84	36	3	3	56	1.33
42909897--42909939	19	2.2	19	84	12	52	39	4	0	55	1.20
42914476--42914947	117	4.0	117	95	1	822	37	20	13	27	1.91
42914476--42914947	233	2.0	234	95	1	840	37	20	13	27	1.91
42915714--42915745	6	5.3	6	100	0	64	15	0	0	84	0.63
42916718--42916788	9	7.7	9	83	10	81	63	1	4	30	1.22
42916718--42916788	19	3.8	18	82	10	81	63	1	4	30	1.22
42916719--42916788	29	2.5	28	84	6	88	64	1	4	30	1.21
42917592--42917695	40	2.6	40	86	3	138	19	24	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42917608--42917673	20	3.3	19	72	8	60	19	24	16	39	1.92
42924728--42924756	5	5.8	5	100	0	58	17	0	0	82	0.66
42941786--42941820	13	2.8	13	86	4	54	48	5	0	45	1.26
42942247--42942296	26	1.9	26	83	0	64	74	24	2	0	0.93
42947016--42947053	11	3.5	11	82	7	51	31	7	0	60	1.25
42947995--42948068	13	5.4	13	71	17	60	78	2	2	16	0.98
42947976--42948067	48	1.9	47	82	6	114	76	2	4	17	1.06
42948195--42948233	12	3.3	12	82	7	53	71	0	2	25	0.98
42948197--42948234	20	2.0	20	89	5	60	73	0	2	23	0.95
42948485--42948845	178	2.0	178	89	1	553	19	29	22	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175