genome.fa.s16.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  146  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44669154--44669362	104	2.0	104	99	0	409	30	9	13	46	1.75
44682661--44682703	14	3.0	13	83	16	50	39	0	0	60	0.97
44682767--44682848	38	2.1	38	84	9	101	52	6	2	39	1.39
44682956--44682983	6	4.7	6	100	0	56	67	0	0	32	0.91
44686386--44686443	24	2.5	23	91	5	98	56	0	3	39	1.16
44686701--44686759	28	2.1	28	100	0	118	57	3	0	38	1.15
44689435--44689471	17	2.2	17	90	0	56	59	2	16	21	1.49
44689464--44689498	15	2.3	15	90	0	52	51	0	11	37	1.38
44689589--44689632	22	2.0	21	82	4	52	29	11	0	59	1.32
44697705--44697774	27	2.6	27	93	0	122	14	21	21	42	1.88
44697827--44697900	24	3.0	24	74	14	71	17	18	17	45	1.85
44720700--44720793	46	2.0	46	93	0	161	29	26	8	35	1.86
44721539--44721575	17	2.2	17	95	0	65	51	21	2	24	1.61
44721722--44721871	42	3.6	42	77	13	130	42	16	23	18	1.88
44721803--44721870	21	3.2	20	71	8	64	41	17	23	17	1.90
44731563--44731697	30	4.5	31	72	12	102	33	20	5	41	1.74
44731563--44731653	32	2.9	32	81	3	96	34	20	2	42	1.65
44732207--44732262	4	13.8	4	74	10	51	75	1	23	0	0.90
44732207--44732262	20	2.7	21	83	5	69	75	1	23	0	0.90
44732207--44732284	25	3.2	23	80	10	66	70	1	28	0	0.95
44732336--44732377	18	2.3	18	87	0	57	35	50	14	0	1.43
44732568--44732602	15	2.3	15	95	0	61	85	5	8	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44733051--44733403	18	19.9	18	72	9	226	30	11	11	46	1.75
44733048--44733403	35	10.0	35	73	12	205	30	12	10	46	1.76
44733302--44733403	52	2.0	52	82	7	127	30	11	11	46	1.76
44733050--44733461	18	23.4	17	69	13	140	32	12	10	45	1.75
44741784--44741819	18	2.0	18	100	0	72	33	5	44	16	1.71
44744388--44744455	15	4.5	15	76	9	57	82	7	8	1	0.91
44744388--44744456	22	3.1	21	77	18	61	82	7	8	1	0.90
44744391--44744439	12	4.2	12	75	15	50	81	10	6	2	0.94
44744389--44744455	27	2.4	29	80	9	77	82	7	8	1	0.92
44745306--44745967	75	8.7	73	80	7	560	28	15	19	35	1.93
44752980--44753072	25	3.6	25	74	8	80	17	22	21	38	1.93
44760865--44760930	3	22.0	3	84	0	87	60	3	4	31	1.32
44760874--44760957	15	5.7	15	81	5	100	59	2	4	33	1.31
44762770--44763222	131	3.5	131	91	1	719	24	24	20	30	1.98
44764451--44764484	7	5.0	7	92	7	61	14	14	0	70	1.17
44764451--44764480	13	2.3	13	100	0	60	13	13	0	73	1.10
44770720--44770797	3	26.7	3	79	5	88	60	1	3	34	1.23
44772700--44772731	13	2.4	13	94	5	55	15	0	0	84	0.63
44772976--44773020	18	2.5	18	79	10	56	62	2	4	31	1.27
44773284--44773327	19	2.2	20	84	4	54	52	6	2	38	1.41
44773391--44773446	27	2.1	27	100	0	112	51	7	0	41	1.29
44773457--44773491	17	2.1	17	100	0	70	57	11	5	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44776348--44776389	3	14.0	3	94	0	75	64	2	0	33	1.07
44777117--44777169	14	3.6	14	82	5	52	18	11	1	67	1.30
44777447--44777483	14	2.7	13	88	12	56	59	8	2	29	1.40
44777450--44777476	7	3.9	7	100	0	54	59	11	0	29	1.32
44778823--44778857	18	2.0	17	88	5	52	62	0	0	37	0.95
44778800--44778893	47	2.1	45	84	13	122	65	1	1	31	1.06
44778826--44778890	24	2.9	23	75	20	66	63	0	1	35	1.04
44778898--44778925	6	4.7	6	100	0	56	50	0	0	50	1.00
44783495--44784417	156	5.9	156	90	2	1419	38	14	15	31	1.87
44784296--44784551	134	1.9	134	88	0	386	37	14	14	33	1.87
44784430--44784863	156	2.8	156	89	1	638	38	14	14	32	1.87
44784139--44785735	290	5.3	296	80	10	1668	38	14	15	31	1.88
44783984--44785735	446	3.9	447	96	0	2907	38	15	15	31	1.88
44784742--44784997	134	1.9	134	89	0	395	38	15	13	33	1.86
44784876--44785311	157	2.8	157	91	1	669	38	15	16	30	1.89
44785324--44785735	157	2.6	156	89	0	617	38	14	15	30	1.88
44788162--44788946	156	5.0	156	87	2	1101	38	15	15	30	1.88
44788162--44790238	312	6.6	313	87	3	2832	38	14	15	31	1.88
44788772--44789123	177	2.0	177	89	1	535	39	15	15	30	1.88
44788949--44790238	156	8.3	155	90	2	1852	38	14	16	31	1.88
44788162--44790247	468	4.4	468	86	4	2880	38	14	15	31	1.88
44795575--44795616	18	2.4	17	84	11	50	40	19	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44795977--44796082	34	3.0	33	78	15	113	33	17	17	30	1.94
44796006--44796080	38	2.0	38	91	0	123	34	18	17	29	1.94
44798379--44798543	37	4.5	37	97	0	296	25	20	17	36	1.94
44798508--44798873	52	7.2	52	84	7	468	28	22	14	34	1.93
44798508--44798865	98	3.6	98	90	2	511	28	22	13	34	1.93
44798515--44798879	150	2.5	144	92	5	586	28	22	14	34	1.93
44802009--44802212	49	4.0	50	83	10	241	32	29	13	24	1.94
44802093--44802211	58	2.0	59	98	1	231	31	31	13	23	1.93
44802102--44802192	28	3.2	28	66	22	80	27	31	15	25	1.95
44803481--44803645	37	4.5	37	97	0	296	25	20	17	36	1.94
44803610--44803975	52	7.2	52	84	7	468	28	22	14	34	1.93
44803610--44803967	98	3.6	98	90	2	511	28	22	13	34	1.93
44803617--44803981	150	2.5	144	92	5	586	28	22	14	34	1.93
44807878--44808045	47	3.6	45	70	19	132	45	2	3	47	1.35
44807804--44808011	91	2.3	91	89	0	317	46	3	3	46	1.37
44807825--44807986	44	3.6	43	69	19	116	45	1	3	48	1.30
44807824--44807900	28	2.8	28	73	9	52	42	1	3	51	1.28
44808161--44808215	24	2.2	26	81	12	71	45	0	1	52	1.11
44808339--44808443	44	2.5	40	76	15	113	31	29	4	34	1.78
44808337--44808446	45	2.6	44	81	8	131	31	29	5	33	1.80
44808425--44808478	16	3.4	16	94	0	90	31	35	0	33	1.58
44812272--44812338	29	2.3	29	82	5	82	40	19	16	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44812815--44813153	168	2.0	168	90	1	536	36	4	9	48	1.57
44814027--44814076	27	2.0	26	88	11	77	52	0	2	46	1.12
44814681--44814714	11	3.1	11	86	0	50	38	2	0	58	1.13
44815013--44815067	29	2.0	29	89	7	87	29	9	10	50	1.68
44817077--44817116	16	2.5	16	87	0	53	52	5	5	37	1.45
44817091--44817128	16	2.4	16	86	8	51	57	2	0	39	1.12
44820468--44820536	16	4.2	16	92	3	111	28	0	33	37	1.58
44820468--44820536	33	2.1	32	91	2	111	28	0	33	37	1.58
44820517--44820606	45	2.0	45	84	2	119	27	6	27	37	1.82
44820527--44820630	44	2.4	43	80	12	117	32	6	26	33	1.83
44820752--44820806	15	3.4	16	80	16	53	54	1	0	43	1.10
44820758--44820806	16	2.9	18	80	20	61	55	0	0	44	0.99
44820659--44820986	156	2.1	156	96	0	602	42	3	6	46	1.46
44820928--44820962	18	2.0	17	88	5	52	54	0	0	45	0.99
44820664--44821103	156	3.1	136	78	14	472	43	3	5	47	1.43
44820854--44821066	67	3.2	66	64	19	159	46	3	3	46	1.37
44820845--44821110	137	1.9	138	90	0	426	44	3	4	47	1.38
44820866--44821144	137	2.0	134	81	6	319	45	4	3	46	1.41
44822084--44822118	18	2.0	17	88	5	52	54	0	0	45	0.99
44822117--44822155	16	2.4	16	100	0	78	41	12	0	46	1.42
44826647--44826684	19	2.0	19	89	0	58	42	0	0	57	0.98
44827769--44827830	18	3.3	18	75	24	58	29	1	3	66	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44831608--44831712	44	2.4	45	82	6	124	20	26	20	32	1.97
44831836--44832000	86	1.9	88	82	2	208	24	23	24	27	2.00
44833238--44833270	14	2.4	14	94	0	57	12	15	0	72	1.12
44834129--44834162	14	2.3	15	90	10	52	2	14	0	82	0.79
44834171--44834221	11	4.7	11	77	22	63	11	0	9	78	0.97
44834158--44834220	32	2.0	32	90	3	101	11	1	11	76	1.10
44834173--44834217	23	1.9	23	86	4	63	11	0	8	80	0.92
44836539--44836583	20	2.2	21	84	4	56	13	22	11	53	1.71
44840571--44840626	20	2.9	19	85	12	71	64	3	1	30	1.21
44840574--44840619	10	4.6	10	79	15	51	67	2	2	28	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175