genome.fa.s16.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  152  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46007539--46007633	45	2.1	44	84	1	118	33	25	6	34	1.81
46007614--46007665	16	3.2	16	91	0	77	36	34	0	28	1.58
46010203--46010245	21	2.0	21	86	8	61	34	0	6	58	1.25
46010276--46010429	18	8.9	18	66	18	76	40	0	3	55	1.21
46010210--46010688	120	4.0	120	94	3	840	42	0	4	52	1.26
46010411--46010475	27	2.4	27	85	10	89	38	0	0	61	0.96
46010210--46010682	239	2.0	240	94	2	844	42	0	4	52	1.26
46010826--46010922	45	2.2	45	85	5	126	32	28	5	32	1.79
46010902--46010950	16	3.1	16	93	0	89	20	34	6	38	1.77
46029249--46029358	45	2.5	45	86	1	141	44	8	20	27	1.79
46030088--46030139	23	2.3	23	90	6	79	23	17	13	46	1.83
46032669--46032706	16	2.3	17	86	4	60	34	5	10	50	1.59
46033070--46033099	15	2.0	15	93	0	51	26	23	6	43	1.78
46049277--46049310	5	7.0	5	86	6	52	14	2	0	82	0.79
46049896--46049955	3	19.7	3	76	10	50	28	3	1	66	1.17
46049896--46049958	21	3.1	21	75	11	69	28	3	1	66	1.16
46049896--46049959	9	6.8	9	76	13	58	28	3	1	67	1.15
46052696--46052746	25	2.1	23	89	7	75	23	1	1	72	1.05
46056328--46056372	22	2.0	22	83	8	56	35	2	2	60	1.22
46057035--46057078	14	3.1	14	83	0	61	45	2	11	40	1.53
46057918--46057943	3	8.7	3	100	0	52	65	0	34	0	0.93
46063003--46063027	13	1.9	13	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46063045--46063084	7	5.7	7	100	0	80	72	0	0	27	0.85
46063681--46063745	28	2.3	28	77	15	71	58	9	7	24	1.55
46068010--46068099	26	3.5	25	71	7	81	51	4	1	43	1.29
46070166--46070217	10	5.1	10	82	11	52	59	9	0	30	1.29
46079693--46079930	125	1.9	125	87	1	352	30	15	22	31	1.95
46079684--46079962	125	2.2	125	82	3	346	28	17	22	31	1.97
46083133--46083308	7	24.3	7	66	20	51	21	0	27	50	1.53
46083140--46083781	22	29.6	21	69	16	227	23	0	27	48	1.55
46083145--46083315	21	7.9	21	77	9	148	19	0	28	51	1.47
46083255--46083355	15	6.8	15	71	13	66	18	0	27	53	1.45
46083266--46083352	37	2.4	36	75	12	86	19	0	28	51	1.47
46083210--46083366	29	5.3	30	69	14	96	21	0	28	50	1.49
46083344--46083410	21	3.2	20	82	2	80	26	1	26	44	1.63
46083351--46083410	20	3.0	20	85	2	75	28	1	26	43	1.65
46083432--46083469	14	2.6	15	83	4	51	26	0	23	50	1.50
46083466--46083551	14	6.0	15	68	15	56	24	0	25	50	1.50
46083523--46083579	15	3.7	15	81	4	53	19	0	24	56	1.42
46083552--46083665	15	7.8	15	70	20	80	20	0	28	50	1.54
46083612--46083675	29	2.2	29	89	8	96	18	0	29	51	1.47
46083627--46083695	13	4.8	13	74	22	59	20	0	27	52	1.47
46083756--46083831	13	5.5	13	70	14	55	28	0	30	40	1.57
46083763--46083845	29	2.9	27	75	10	76	27	1	30	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46083783--46083871	15	6.1	14	72	6	61	26	1	28	43	1.62
46083840--46083880	15	2.7	16	85	7	50	24	0	24	51	1.49
46083140--46083323	43	4.2	42	81	8	192	19	0	28	51	1.47
46083838--46084347	43	11.5	43	68	16	224	19	0	30	49	1.52
46083538--46084361	22	36.6	22	69	15	313	21	0	29	48	1.55
46084028--46084073	15	3.0	15	87	3	56	15	0	34	50	1.44
46084139--46084173	15	2.3	15	95	0	61	17	0	25	57	1.40
46084180--46084222	13	3.2	13	87	6	59	16	0	32	51	1.45
46084185--46084229	7	6.6	7	89	5	65	11	0	40	48	1.39
46084227--46084347	21	5.7	21	74	13	95	19	0	28	50	1.54
46084289--46084361	21	3.4	21	79	5	76	19	0	31	49	1.48
46084403--46084470	22	3.1	22	85	4	93	17	0	26	55	1.42
46084386--46084441	29	1.9	29	81	0	67	21	0	26	51	1.48
46084963--46085002	18	2.2	18	90	0	62	42	7	30	20	1.79
46086903--46086957	11	4.8	12	85	14	73	43	0	32	23	1.54
46093641--46093692	24	2.2	24	86	6	72	63	7	0	28	1.22
46097807--46097856	18	2.9	17	80	11	50	62	8	2	28	1.35
46099844--46099905	30	2.1	30	90	0	97	25	3	14	56	1.53
46100029--46100059	11	2.8	11	90	0	53	67	0	0	32	0.91
46106222--46106282	31	2.0	30	87	3	86	50	11	1	36	1.48
46114979--46115019	12	3.5	12	80	6	57	9	14	0	75	1.04
46117133--46117184	27	1.9	27	92	0	86	25	7	11	55	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46117216--46117260	23	2.0	23	86	0	63	40	11	17	31	1.85
46122423--46122483	29	2.1	30	96	3	115	26	13	18	42	1.86
46123811--46123855	6	7.5	6	89	0	54	62	0	22	15	1.33
46123999--46124070	26	2.8	26	89	2	110	41	9	16	31	1.81
46125547--46125610	12	5.6	11	74	18	60	18	1	1	78	0.92
46125574--46125610	6	6.3	6	90	9	51	16	0	0	83	0.64
46126240--46126285	21	2.2	21	92	0	74	13	39	30	17	1.87
46129129--46129164	14	2.6	14	95	0	63	52	19	5	22	1.66
46138294--46138338	3	14.7	3	82	13	56	64	0	4	31	1.13
46138275--46138331	15	3.6	16	79	11	64	57	1	8	31	1.39
46139949--46140138	98	1.9	98	88	4	285	30	21	14	33	1.93
46140129--46141573	44	32.9	44	69	9	209	28	21	19	30	1.98
46140047--46140864	218	3.8	217	90	2	1162	28	22	19	30	1.98
46140158--46140903	87	8.6	89	69	13	277	27	22	19	30	1.98
46140614--46141051	129	3.4	129	91	1	664	29	21	18	30	1.97
46141101--46141572	44	10.8	44	72	7	221	28	22	19	29	1.98
46140178--46141441	574	2.2	564	86	5	1677	28	21	19	30	1.98
46141149--46141589	175	2.5	174	91	0	693	29	22	19	29	1.98
46141058--46141572	131	3.9	130	70	10	316	28	22	19	29	1.98
46142808--46142854	7	7.0	7	85	9	71	14	17	0	68	1.22
46142811--46142853	13	3.3	13	87	6	61	13	16	0	69	1.19
46142808--46142854	20	2.3	20	96	0	85	14	17	0	68	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46143718--46143780	16	3.8	16	73	10	63	6	9	7	76	1.16
46143712--46143760	22	2.2	23	85	10	66	4	12	6	77	1.09
46148298--46148342	3	14.7	3	82	13	56	64	0	4	31	1.13
46148279--46148335	15	3.6	16	79	11	64	57	1	8	31	1.39
46149234--46149283	23	2.0	26	85	11	70	54	20	14	12	1.71
46151694--46151848	42	3.7	42	76	6	136	46	17	20	15	1.84
46152047--46152087	12	3.6	12	77	12	50	39	2	2	56	1.26
46153334--46153425	21	4.4	21	81	0	121	19	18	13	48	1.80
46153335--46153427	42	2.2	42	90	0	141	20	18	12	48	1.80
46153335--46153448	21	5.4	21	77	0	84	20	21	13	45	1.84
46156972--46157028	23	2.5	23	82	0	69	15	5	12	66	1.41
46157597--46157649	24	2.3	23	90	3	79	16	26	5	50	1.67
46163235--46163732	248	2.0	248	99	0	987	25	21	19	33	1.97
46168998--46169031	17	2.0	17	94	0	59	44	50	0	5	1.26
46173637--46173670	17	2.0	17	94	0	59	44	50	0	5	1.26
46174335--46174362	10	2.8	10	100	0	56	39	0	0	60	0.97
46175531--46175556	13	2.0	13	100	0	52	38	0	0	61	0.96
46178091--46178149	30	2.0	30	96	0	109	28	5	11	54	1.58
46178278--46178310	11	2.9	12	86	13	52	66	0	0	33	0.92
46178544--46178576	14	2.3	15	89	5	50	45	0	0	54	0.99
46180977--46181037	27	2.2	26	80	8	68	47	4	6	40	1.51
46186954--46187020	34	1.9	35	90	3	109	32	8	13	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46188649--46188693	3	15.0	3	80	0	54	33	4	2	60	1.29
46201187--46201823	132	4.8	132	89	1	938	29	19	24	26	1.98
46201507--46201719	44	4.8	44	67	12	123	27	20	26	25	1.99
46203490--46203549	3	20.0	3	92	0	102	33	3	0	63	1.11
46206096--46206138	3	13.7	3	85	9	59	69	0	0	30	0.88
46206090--46206138	12	4.0	12	87	10	64	71	0	0	28	0.86
46206096--46206139	19	2.3	19	92	0	70	70	0	0	29	0.88
46206096--46206135	16	2.5	15	92	8	62	70	0	0	30	0.88
46206173--46206232	29	2.1	28	84	9	77	28	20	8	43	1.80
46206591--46206645	26	2.1	26	89	0	83	45	1	1	50	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175