genome.fa.s16.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  113  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35592964--35592998	17	2.1	17	89	10	54	68	2	0	28	1.04
35596331--35596355	12	2.1	12	100	0	50	48	0	0	52	1.00
35598100--35598235	50	2.7	52	76	7	138	39	11	14	33	1.83
35602631--35602812	63	2.9	64	79	3	190	28	23	24	24	2.00
35606897--35606927	16	1.9	16	93	0	53	32	22	3	41	1.70
35609340--35609562	41	5.4	41	85	1	313	17	20	31	30	1.96
35609340--35609575	123	1.9	123	90	1	375	19	20	31	29	1.97
35610021--35610071	14	3.6	14	76	12	50	23	0	43	33	1.54
35613725--35613923	43	4.7	43	85	3	260	25	18	30	26	1.98
35613725--35613923	85	2.3	86	86	3	260	25	18	30	26	1.98
35615355--35615404	22	2.4	22	86	6	68	40	0	6	54	1.25
35615361--35615411	22	2.2	23	83	13	61	37	0	7	54	1.29
35615712--35615758	23	2.0	23	84	12	60	42	2	2	53	1.25
35616785--35616814	10	3.1	10	90	9	53	53	0	0	46	1.00
35619650--35619971	95	3.4	95	79	8	329	38	2	18	40	1.65
35620015--35620300	126	2.3	126	91	0	457	31	20	20	26	1.97
35623231--35623291	29	2.2	27	82	11	70	59	4	1	34	1.29
35623299--35623327	11	2.6	11	100	0	58	34	0	37	27	1.57
35625745--35625808	31	2.1	31	85	5	85	45	14	6	34	1.70
35626660--35626693	14	2.2	16	90	10	54	55	0	2	41	1.15
35629432--35629472	18	2.3	18	83	8	57	14	46	26	12	1.80
35644726--35644756	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35645046--35645105	30	2.0	31	90	3	95	20	38	0	41	1.52
35645727--35645773	5	9.2	5	80	13	51	23	25	14	36	1.93
35654194--35654284	45	2.0	45	93	0	155	29	14	15	40	1.86
35654942--35655005	31	2.1	31	85	5	85	26	6	4	62	1.39
35659356--35659435	28	2.9	28	100	0	160	25	18	23	32	1.97
35665550--35665612	21	3.0	21	73	0	63	17	20	19	42	1.89
35668535--35668575	22	1.9	22	85	5	57	39	0	7	53	1.29
35679729--35679806	39	2.0	39	100	0	156	43	23	7	25	1.80
35680880--35680924	10	4.3	10	83	10	54	57	6	0	35	1.25
35684902--35685155	33	7.4	33	66	21	137	33	27	19	20	1.97
35684898--35685099	75	2.7	75	91	2	327	31	27	19	21	1.97
35685046--35685182	60	2.3	60	93	0	238	33	29	20	16	1.95
35685075--35685184	27	3.9	27	79	13	130	31	30	21	16	1.95
35691973--35692052	27	3.0	27	100	0	160	26	30	25	18	1.98
35691901--35692154	131	2.0	129	92	1	427	30	27	21	20	1.98
35691871--35692154	131	2.2	129	89	3	383	30	27	21	20	1.98
35701233--35701681	70	6.4	70	80	5	392	26	17	23	32	1.97
35701235--35701685	140	3.2	139	80	3	503	26	17	23	32	1.97
35714423--35714457	18	1.9	18	94	0	61	54	5	11	28	1.59
35715381--35715418	18	2.1	18	95	0	67	28	18	34	18	1.95
35715668--35715784	36	3.3	35	70	9	94	24	23	21	30	1.99
35715649--35715901	70	3.6	70	82	0	308	26	22	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35718726--35718830	42	2.5	43	85	1	140	24	19	24	31	1.98
35718685--35718843	43	3.7	43	74	15	141	25	17	26	30	1.97
35720597--35720791	42	4.7	42	78	8	166	28	15	25	30	1.96
35722913--35723089	88	2.0	88	100	0	354	28	5	22	43	1.76
35729260--35729303	20	2.2	20	100	0	88	34	0	9	56	1.31
35737244--35737379	40	3.5	40	78	9	154	28	22	21	27	1.99
35737234--35737379	79	1.8	79	81	8	181	28	22	21	27	1.99
35737244--35737394	39	3.8	38	78	11	135	31	23	20	24	1.98
35737361--35737713	196	1.8	196	84	3	487	33	17	20	27	1.96
35737635--35737729	40	2.4	40	84	5	120	29	20	24	26	1.99
35737815--35737875	7	8.6	7	74	3	59	26	1	22	49	1.59
35738030--35738084	21	2.6	22	88	8	87	25	9	38	27	1.86
35738248--35738364	18	7.0	17	66	21	68	56	1	0	41	1.15
35738286--35738484	59	3.3	58	72	14	199	53	3	1	41	1.24
35738264--35738506	120	2.0	120	97	0	459	51	4	1	43	1.31
35738314--35738506	61	3.2	60	71	12	187	50	4	1	43	1.32
35741588--35741623	18	2.0	18	94	0	63	41	0	58	0	0.98
35741790--35741820	15	2.1	15	100	0	62	19	41	25	12	1.87
35742153--35742205	28	1.9	27	88	3	79	20	3	22	52	1.62
35745678--35745784	43	2.5	43	76	11	119	28	14	22	33	1.94
35747875--35747919	3	15.0	3	100	0	90	66	0	0	33	0.92
35748809--35748883	36	2.1	36	84	0	96	37	1	17	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35748976--35749110	70	1.9	70	84	0	180	26	23	20	29	1.99
35748998--35749165	70	2.3	70	80	7	176	26	21	23	29	1.99
35751143--35751183	9	4.4	9	81	6	55	34	2	39	24	1.69
35751143--35751187	19	2.4	18	88	3	63	37	2	37	22	1.67
35754329--35754353	5	5.0	5	100	0	50	40	20	0	40	1.52
35760295--35760329	17	2.1	17	89	5	54	20	8	0	71	1.11
35764190--35764267	33	2.5	32	81	6	88	48	2	10	38	1.51
35764191--35764245	26	2.0	27	86	10	76	45	3	10	40	1.57
35764317--35764373	23	2.4	23	85	2	69	52	3	7	36	1.46
35766007--35766528	252	2.1	252	89	1	796	26	24	18	30	1.98
35766425--35766528	44	2.4	43	84	6	131	25	28	19	26	1.98
35776322--35777041	360	2.0	360	96	0	1341	31	23	16	27	1.96
35777357--35777391	16	2.2	16	89	0	52	42	22	17	17	1.88
35779010--35779048	20	2.0	20	85	10	53	66	2	2	28	1.18
35779079--35779136	30	2.0	29	90	6	91	46	3	10	39	1.55
35781364--35781402	19	2.1	19	85	0	51	48	2	0	48	1.15
35802140--35802209	16	4.5	15	67	13	52	58	0	2	38	1.13
35802164--35802225	31	2.0	31	84	3	81	58	0	3	38	1.15
35803933--35803996	33	2.0	32	90	3	101	39	25	9	26	1.86
35804209--35804364	41	3.8	41	89	6	235	28	22	20	28	1.98
35805896--35805920	13	1.9	13	100	0	50	68	24	0	8	1.16
35811511--35811574	33	2.0	32	90	3	101	39	25	9	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35811789--35811944	41	3.8	41	89	6	235	28	22	20	28	1.98
35813477--35813501	13	1.9	13	100	0	50	68	24	0	8	1.16
35824168--35824273	44	2.4	44	77	0	113	18	31	17	32	1.95
35824449--35824488	18	2.2	18	86	0	53	15	35	22	27	1.94
35824477--35824551	25	3.0	25	75	7	62	18	29	20	32	1.96
35833147--35833187	17	2.4	17	91	0	64	2	12	39	46	1.54
35838604--35838659	3	18.7	3	78	7	60	28	30	7	33	1.84
35844790--35845001	79	2.7	79	91	2	336	26	25	20	26	1.99
35844757--35845007	119	2.1	120	83	8	334	26	25	19	27	1.99
35844790--35845001	40	5.3	40	92	4	331	26	25	20	26	1.99
35852886--35853151	40	6.7	40	90	3	351	26	27	21	25	1.99
35856411--35856466	26	2.2	27	84	9	73	14	21	26	37	1.92
35861587--35861633	22	2.1	22	84	7	60	38	0	27	34	1.57
35862868--35862961	31	3.0	31	93	3	161	31	10	14	42	1.80
35863265--35863294	12	2.6	11	90	10	51	26	3	0	70	1.03
35863512--35863607	9	10.4	9	78	7	86	73	14	10	1	1.14
35863518--35863606	39	2.4	39	83	9	123	73	14	11	1	1.16
35863525--35863662	50	2.8	48	83	8	161	70	13	15	1	1.24
35866811--35866904	31	3.0	31	93	3	161	31	10	14	42	1.80
35867209--35867238	12	2.6	11	90	10	51	26	3	0	70	1.03
35878935--35879014	31	2.6	31	93	0	133	17	38	25	18	1.92
35882976--35883046	20	3.6	18	81	14	79	39	7	12	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35892634--35892694	29	2.1	30	96	3	115	47	3	3	45	1.35
35892652--35892769	29	4.1	29	76	12	82	50	6	3	38	1.45
35892689--35892769	27	2.9	26	80	12	90	51	8	2	37	1.46
35894510--35894612	47	2.2	47	89	0	161	46	22	12	18	1.82
35896815--35897174	188	1.9	188	97	0	684	31	17	12	38	1.88
35898149--35898182	18	1.9	18	88	5	52	35	2	8	52	1.47
35899142--35899556	36	11.3	37	81	4	421	34	20	14	30	1.92
35899142--35899556	73	5.6	74	80	5	441	34	20	14	30	1.92
35910698--35910858	56	2.9	56	84	3	225	36	14	14	34	1.87
35910673--35910858	84	2.2	85	84	5	236	36	15	12	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175