genome.fa.s16.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  45  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12964318--12964372	22	2.5	21	82	8	65	45	1	3	49	1.30
12964324--12964371	23	2.1	22	88	3	69	45	0	4	50	1.21
12964860--12964897	16	2.4	16	90	0	58	26	31	2	39	1.70
12967751--12967793	11	3.7	11	84	6	50	76	4	6	11	1.13
12967749--12967809	13	4.8	13	84	10	72	77	3	6	13	1.09
12967752--12967806	24	2.3	23	84	9	74	74	3	7	14	1.17
12970052--12970093	17	2.4	18	80	7	52	57	4	23	14	1.56
12979155--12979183	12	2.3	13	94	5	51	20	6	6	65	1.40
12989728--12989756	15	1.9	15	100	0	58	41	20	20	17	1.90
12991598--12991624	7	3.9	7	100	0	54	40	29	14	14	1.86
12992614--12992653	14	2.9	14	85	3	55	40	7	0	52	1.30
13005871--13006481	306	2.0	306	96	0	1132	23	30	18	27	1.98
13010009--13010062	28	2.0	27	82	17	67	51	1	11	35	1.48
13010111--13010146	18	2.1	16	90	10	54	61	0	5	33	1.19
13016674--13016895	24	9.4	23	76	4	167	41	17	14	26	1.88
13016641--13016852	70	3.0	70	90	3	311	41	18	12	27	1.87
13016771--13016906	47	2.9	47	84	6	159	40	17	16	25	1.90
13017901--13018013	43	2.6	43	80	15	135	26	27	19	26	1.99
13024348--13024500	23	6.5	23	65	15	71	41	16	9	32	1.82
13025089--13025318	37	6.2	36	79	4	199	38	16	14	29	1.89
13025089--13025338	75	3.4	74	76	8	224	38	17	14	29	1.90
13025089--13025370	112	2.5	112	85	1	361	37	18	15	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13035126--13035178	23	2.3	23	93	0	97	32	26	20	20	1.98
13038177--13038211	16	2.3	15	90	5	52	82	0	17	0	0.66
13042828--13042873	3	15.3	3	100	0	92	67	0	0	32	0.91
13056805--13056898	37	2.5	38	79	5	111	38	19	14	27	1.91
13061393--13061628	48	4.9	48	94	0	418	26	18	25	28	1.98
13064418--13064450	17	1.9	18	88	11	52	45	0	12	42	1.41
13068702--13068755	25	2.3	23	81	12	56	66	22	7	3	1.33
13074551--13074584	15	2.4	14	90	5	50	82	5	0	11	0.83
13074553--13074594	21	2.0	22	85	4	59	78	4	4	11	1.06
13076887--13077293	44	8.8	44	68	18	195	32	19	19	28	1.97
13076916--13077333	142	2.9	142	94	0	719	33	18	19	28	1.95
13077420--13077645	50	4.5	50	73	5	188	34	25	17	23	1.96
13077387--13077593	100	2.1	100	92	0	342	33	27	18	21	1.96
13078167--13078220	25	2.3	23	81	12	56	64	22	9	3	1.38
13079338--13079390	11	4.6	11	76	15	54	28	5	5	60	1.42
13082365--13082398	5	6.6	5	90	6	50	82	0	2	14	0.79
13084138--13084208	31	2.2	32	82	7	83	26	28	29	15	1.96
13084264--13084341	27	2.9	27	78	3	95	33	19	24	23	1.97
13084320--13084387	27	2.5	27	80	0	91	35	14	25	25	1.94
13087093--13087141	24	2.0	24	100	0	98	28	8	34	28	1.86
13087824--13087870	21	2.2	21	80	0	58	17	29	21	31	1.96
13100953--13100978	8	3.2	8	100	0	52	26	23	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13101220--13101251	16	2.1	16	88	11	50	59	0	40	0	0.97
13110558--13110622	19	3.4	19	72	4	58	60	3	0	36	1.13
13114681--13115165	23	19.8	23	75	20	384	28	0	25	46	1.55
13114681--13115163	51	9.8	52	77	14	399	28	0	25	46	1.55
13114725--13115128	29	15.9	28	74	21	273	28	0	25	46	1.55
13114720--13115165	74	5.9	74	87	8	591	27	0	25	46	1.55
13114681--13115112	177	2.5	170	85	9	561	28	0	24	46	1.55
13115162--13115229	25	2.7	25	100	0	136	41	14	0	44	1.45
13115706--13115740	18	1.9	18	94	0	61	34	8	31	25	1.86
13116389--13116413	7	3.6	7	100	0	50	60	12	0	28	1.32
13118540--13118650	51	2.2	51	95	1	197	42	1	25	30	1.65
13118627--13118665	10	3.6	11	86	13	55	43	0	35	20	1.52
13119619--13119699	40	2.0	40	97	0	153	32	22	12	33	1.91
13126706--13126753	21	2.3	20	79	10	53	47	12	4	35	1.60
13129799--13129838	20	1.9	20	85	10	53	55	20	5	20	1.62
13131318--13131545	20	11.4	20	66	10	83	35	19	30	14	1.92
13131318--13131546	40	5.7	40	81	4	228	34	19	30	15	1.92
13133898--13133953	19	2.8	19	94	5	94	37	10	16	35	1.83
13134151--13134189	19	2.0	21	85	10	55	15	10	5	69	1.34
13134406--13134445	3	13.3	3	84	10	55	32	0	0	67	0.91
13134390--13134444	15	3.7	15	74	16	53	30	0	1	67	1.01
13134392--13134443	12	4.1	12	80	14	52	28	0	1	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13134707--13134819	51	2.2	52	81	6	133	31	6	6	55	1.49
13140902--13142089	132	9.0	132	92	0	1937	31	19	24	24	1.98
13140952--13142060	44	25.2	44	62	10	260	31	19	23	25	1.98
13142099--13142388	44	6.7	43	70	13	173	30	19	22	27	1.98
13142664--13142759	21	4.8	19	89	5	120	38	11	13	36	1.81
13142684--13142748	21	3.1	21	100	0	130	38	9	13	38	1.77
13142679--13142782	21	4.9	22	85	11	78	37	7	15	39	1.76
13142748--13142792	23	2.0	23	86	4	65	33	4	15	46	1.66
13143217--13143247	15	2.1	14	94	5	53	38	0	0	61	0.96
13143506--13143617	51	2.2	52	80	6	131	32	6	6	55	1.50
13143733--13143782	24	2.1	24	81	7	57	24	8	6	62	1.46
13155637--13155675	19	2.1	19	95	0	69	20	17	28	33	1.96
13156614--13156665	23	2.3	22	78	15	52	17	11	3	67	1.36
13161713--13162020	69	4.5	67	72	12	214	37	16	23	21	1.93
13161752--13162018	138	1.9	138	84	4	351	37	16	24	21	1.93
13161758--13162041	69	4.1	68	77	6	277	39	16	23	21	1.92
13177370--13177592	101	2.2	102	77	7	231	26	15	27	30	1.96
13177396--13177586	51	3.8	52	74	8	171	25	16	26	31	1.97
13177814--13177845	16	2.0	16	93	0	55	59	0	15	25	1.36
13181487--13181750	45	5.9	45	93	0	413	39	15	19	26	1.91
13185956--13186021	27	2.4	27	82	9	73	33	13	30	22	1.93
13200735--13200944	91	2.3	91	85	2	287	41	12	12	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13200855--13200916	29	2.1	31	93	6	110	41	17	11	29	1.84
13201143--13201208	32	2.0	33	85	8	91	36	3	0	60	1.12
13202307--13202334	3	9.3	3	100	0	56	32	0	0	67	0.91
13202695--13202740	22	2.1	22	92	4	76	41	0	6	52	1.27
13202694--13202740	21	2.1	23	84	11	71	40	0	6	53	1.27
13203093--13203131	10	3.8	10	80	6	51	28	2	0	69	1.02
13203089--13203133	21	2.1	22	95	4	83	26	4	0	68	1.08
13203334--13203500	92	1.8	91	83	7	223	34	10	22	32	1.89
13205159--13205205	24	1.9	24	82	4	58	46	4	10	38	1.58
13207417--13207553	31	4.5	31	69	9	111	44	15	10	29	1.79
13207365--13207596	91	2.5	91	84	4	254	43	15	9	30	1.80
13208733--13208778	17	2.7	17	81	18	60	21	17	6	54	1.65
13208661--13209306	356	1.8	356	81	3	807	23	19	11	45	1.82
13215178--13215595	213	2.0	213	93	0	721	35	17	10	37	1.83
13217576--13217609	17	2.1	16	88	5	50	58	17	8	14	1.61
13222075--13222183	54	2.0	55	96	1	202	35	12	6	44	1.68
13241967--13242030	20	3.0	21	76	17	60	60	3	21	14	1.47
13242947--13243000	20	2.7	20	82	0	63	24	20	18	37	1.94
13242947--13243020	30	2.5	30	86	8	98	21	20	18	39	1.93
13242947--13243011	20	3.2	20	71	16	53	23	21	16	38	1.93
13244654--13244687	12	2.8	12	86	0	50	79	2	5	11	1.02
13244665--13244738	30	2.6	28	82	12	89	68	8	13	9	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13245765--13245798	18	1.9	18	88	5	52	52	2	35	8	1.47
13247064--13247117	20	2.7	20	82	0	63	24	20	18	37	1.94
13247064--13247137	30	2.5	30	86	8	98	21	20	18	39	1.93
13247064--13247128	20	3.2	20	71	16	53	23	21	16	38	1.93
13249724--13249777	20	2.7	20	82	0	63	24	20	18	37	1.94
13249724--13249797	30	2.5	30	86	8	98	21	20	18	39	1.93
13249724--13249788	20	3.2	20	71	16	53	23	21	16	38	1.93
13255183--13255220	20	1.9	20	88	0	58	34	34	10	21	1.87
13256768--13256806	20	1.9	21	89	5	62	84	2	10	2	0.81
13259610--13259656	20	2.3	20	81	0	58	29	34	12	23	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175