genome.fa.s16.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  115  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36166550--36167109	31	18.3	31	73	7	276	34	6	15	42	1.74
36166500--36167109	276	2.2	275	84	4	853	34	6	16	42	1.74
36166550--36167075	92	5.7	92	91	0	863	34	6	15	43	1.73
36173263--36173612	31	11.4	31	71	9	189	34	6	15	43	1.73
36173281--36173612	61	5.4	59	74	10	231	34	6	15	43	1.74
36173232--36173534	92	3.3	92	93	0	516	35	7	14	42	1.74
36173232--36173588	92	3.9	91	86	4	411	35	7	14	42	1.75
36173233--36173588	184	1.9	183	89	3	545	35	7	14	42	1.74
36177488--36177538	26	2.0	26	100	0	102	54	13	11	19	1.69
36182804--36182876	32	2.5	27	73	23	76	26	2	20	50	1.61
36182817--36182877	32	1.9	32	96	0	113	27	3	18	50	1.62
36184114--36184152	20	2.0	20	89	0	60	46	0	5	48	1.24
36184235--36184290	14	4.0	14	81	9	62	41	17	5	35	1.73
36193064--36193178	50	2.2	52	78	4	135	37	13	13	35	1.84
36198741--36198819	39	2.0	39	87	0	113	36	10	27	25	1.88
36200453--36200545	45	2.1	45	95	0	168	25	18	23	32	1.97
36205755--36205935	51	3.6	49	78	5	202	25	16	25	31	1.96
36216213--36216729	49	10.7	50	65	13	161	22	21	24	32	1.98
36216170--36216737	96	5.9	96	81	7	494	22	21	23	32	1.98
36216543--36216724	50	3.7	50	73	7	138	20	21	25	32	1.97
36229305--36229387	12	7.9	10	76	20	73	65	2	2	30	1.18
36229319--36229388	15	4.9	14	83	15	65	65	1	1	31	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36229319--36229371	3	17.7	3	96	0	97	66	0	1	32	1.03
36236572--36236606	16	2.2	16	89	0	52	17	5	0	77	0.96
36243122--36243156	16	2.2	16	89	0	52	17	5	0	77	0.96
36243122--36243168	23	2.0	24	87	4	69	21	4	0	74	0.99
36243231--36243278	18	2.5	19	83	13	62	31	0	6	62	1.20
36244226--36244302	14	5.0	15	71	20	52	42	15	9	32	1.78
36244242--36244281	20	2.0	20	90	0	62	50	12	10	27	1.72
36244230--36244296	34	1.9	35	90	3	109	46	13	8	31	1.74
36244265--36244304	14	2.9	14	84	0	53	42	17	7	32	1.77
36253715--36253755	20	2.0	20	90	0	64	41	17	4	36	1.71
36257536--36257579	22	2.0	22	81	0	52	56	2	0	40	1.11
36265969--36266011	21	2.0	21	100	0	86	44	13	13	27	1.83
36266900--36266951	17	3.4	17	75	25	69	23	25	26	25	2.00
36268676--36268722	24	1.9	25	91	4	78	27	14	10	46	1.78
36270200--36270485	144	2.0	144	90	1	457	32	16	25	25	1.96
36280120--36280499	45	9.0	45	67	16	163	30	18	25	26	1.98
36288075--36288099	2	12.5	2	100	0	50	0	48	0	52	1.00
36296233--36296288	17	3.7	17	67	30	54	33	12	10	42	1.77
36296228--36296286	27	2.2	27	87	0	82	37	11	8	42	1.72
36296238--36296291	27	2.0	27	100	0	108	29	11	11	48	1.73
36304614--36304660	25	2.0	24	83	8	60	46	27	2	23	1.63
36305802--36305859	29	2.0	29	96	0	107	20	43	17	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36307996--36308048	16	3.2	16	75	2	52	43	13	3	39	1.62
36313830--36313952	58	2.1	55	77	15	131	53	1	2	42	1.23
36313898--36313973	40	1.9	40	89	5	118	57	0	1	40	1.07
36313859--36313972	58	2.0	58	94	3	203	57	0	1	40	1.09
36313878--36313974	9	10.2	9	75	16	81	56	0	1	42	1.06
36316478--36316510	14	2.3	15	89	5	50	24	0	0	75	0.80
36323264--36323334	27	2.7	25	77	12	79	61	0	1	36	1.05
36325093--36325387	40	7.4	40	82	6	368	33	22	17	27	1.96
36325089--36325387	118	2.5	118	98	0	580	33	21	17	27	1.96
36325093--36325387	78	3.8	78	81	9	357	33	22	17	27	1.96
36325545--36325591	24	2.0	24	84	16	62	51	17	0	31	1.46
36325853--36325891	20	2.0	20	94	0	69	48	2	0	48	1.15
36328807--36328839	14	2.4	14	94	0	57	21	9	54	15	1.68
36329853--36329910	22	2.6	22	78	10	55	46	3	1	48	1.29
36333531--36333568	20	1.9	20	88	0	58	47	2	5	44	1.39
36333657--36333790	64	2.1	64	92	0	223	36	10	13	39	1.79
36334399--36334486	45	2.0	44	86	2	122	31	4	29	34	1.78
36334652--36334686	18	2.0	18	88	5	54	54	0	0	45	0.99
36334538--36334855	157	2.0	158	96	0	584	44	2	4	48	1.38
36334809--36334843	18	2.0	17	88	5	52	54	0	0	45	0.99
36334787--36335084	120	2.5	121	92	4	496	49	4	2	43	1.36
36334908--36334959	15	3.6	15	80	12	56	53	1	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36335125--36335172	26	1.9	25	84	16	64	52	2	0	45	1.12
36335080--36335308	92	2.5	92	82	8	227	47	3	3	45	1.38
36338912--36339142	48	4.8	47	96	0	363	36	7	6	48	1.58
36338929--36339109	23	7.6	23	73	14	161	35	8	6	49	1.60
36338912--36339142	96	2.4	96	94	0	408	36	7	6	48	1.58
36340330--36340379	23	2.2	23	86	13	68	50	24	8	18	1.73
36340345--36340391	22	2.1	22	84	7	60	59	19	4	17	1.53
36341120--36341155	17	2.1	17	100	0	72	66	11	11	11	1.45
36351402--36351444	3	14.3	3	95	0	77	0	2	32	65	1.06
36361591--36361640	23	2.2	23	96	0	91	28	22	0	50	1.49
36362607--36362757	41	3.7	41	93	0	257	30	21	19	27	1.98
36373071--36373100	6	5.0	6	95	0	51	66	0	20	13	1.24
36376563--36376674	59	1.9	59	92	0	188	43	8	20	26	1.81
36384237--36384270	17	2.0	17	100	0	68	23	17	41	17	1.90
36389316--36389351	17	2.1	17	100	0	72	13	27	16	41	1.87
36390876--36390946	35	2.0	35	97	0	133	47	5	11	35	1.63
36390876--36390934	21	3.1	21	60	31	51	45	5	13	35	1.66
36394649--36394683	18	1.9	18	88	0	52	2	28	0	68	1.04
36398286--36398324	17	2.4	16	84	16	53	41	2	7	48	1.45
36400259--36400285	6	4.5	6	100	0	54	48	0	33	18	1.49
36400214--36400285	12	6.0	12	79	6	56	43	4	34	18	1.69
36404114--36404161	19	2.5	20	80	10	55	31	14	16	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36404695--36404731	12	3.0	12	92	4	56	32	2	56	8	1.43
36408861--36408949	43	2.1	43	95	0	160	41	12	16	29	1.85
36412743--36412789	24	2.0	24	95	0	85	31	23	12	31	1.92
36412782--36412814	17	1.9	17	93	0	57	30	15	18	36	1.91
36415188--36415294	49	2.2	49	82	0	124	25	16	26	31	1.97
36419247--36419284	20	1.9	20	89	10	60	44	0	0	55	0.99
36423613--36423651	6	6.5	6	100	0	78	33	0	17	48	1.48
36454080--36454131	24	2.1	24	85	3	68	51	1	1	44	1.23
36454203--36454264	16	3.9	16	89	6	99	43	1	29	25	1.64
36454204--36454272	16	4.3	16	85	7	86	42	2	30	24	1.69
36454204--36454272	32	2.2	32	86	5	95	42	2	30	24	1.69
36454416--36454440	3	8.3	3	100	0	50	36	0	0	64	0.94
36454457--36454598	56	2.5	57	78	12	150	50	4	0	45	1.21
36457465--36457492	13	2.2	13	100	0	56	42	32	0	25	1.55
36457581--36457651	36	2.0	36	97	0	133	23	22	28	25	2.00
36458055--36458100	17	2.6	17	86	6	56	65	6	21	6	1.39
36458370--36458424	16	3.4	16	95	5	101	23	0	40	36	1.55
36458405--36458495	45	2.0	45	85	2	121	27	6	28	37	1.82
36458547--36458863	157	2.0	157	94	2	557	44	3	5	47	1.41
36458797--36458838	15	2.7	16	82	14	52	52	2	0	45	1.13
36458806--36458847	15	2.9	15	82	10	52	52	0	0	47	1.00
36458926--36458967	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36459046--36459087	15	2.9	15	82	10	52	52	0	0	47	1.00
36458800--36459212	120	3.4	120	96	1	740	49	5	3	41	1.40
36462746--36462774	6	4.8	6	100	0	58	31	0	68	0	0.89
36464990--36465015	7	3.7	7	100	0	52	26	0	15	57	1.38
36465663--36465705	18	2.4	18	84	0	50	18	25	9	46	1.79
36466264--36466825	21	26.4	21	84	3	637	44	27	0	27	1.57
36466267--36466825	43	13.1	43	83	3	595	44	27	0	27	1.57
36466776--36466852	27	3.1	26	75	21	92	44	28	2	24	1.67
36466264--36466825	64	8.8	64	83	3	661	44	27	0	27	1.57
36466894--36467100	112	1.8	112	93	0	360	44	8	7	39	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175