genome.fa.s16.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  144  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44080275--44080369	47	2.0	48	93	2	165	44	9	3	43	1.52
44080378--44080421	21	2.0	21	82	8	52	50	2	4	43	1.35
44080877--44080945	31	2.3	30	82	5	93	43	13	10	33	1.77
44080877--44080961	31	2.8	29	77	8	80	42	12	9	35	1.76
44083534--44083594	30	2.0	30	100	0	122	34	3	19	42	1.68
44086463--44086504	18	2.5	18	81	11	54	33	0	4	61	1.17
44086859--44086925	33	2.0	33	88	0	98	29	17	20	31	1.96
44087672--44087783	30	3.7	30	97	0	206	7	8	50	33	1.61
44090382--44090443	31	2.0	32	87	3	90	29	16	6	48	1.70
44090910--44091045	29	4.6	29	70	14	84	47	13	17	21	1.83
44093429--44093456	7	4.0	7	100	0	56	14	0	42	42	1.45
44095658--44095751	25	3.8	25	81	8	93	34	20	24	21	1.97
44095708--44095815	25	4.3	25	84	4	128	36	20	25	18	1.95
44104452--44104499	19	2.5	19	76	6	53	62	2	14	20	1.42
44117251--44117293	16	2.7	16	81	0	50	30	20	27	20	1.98
44121088--44121157	29	2.3	32	76	14	85	47	14	1	37	1.53
44121622--44121788	45	4.0	44	76	19	185	38	21	20	19	1.94
44121665--44121741	33	2.3	33	97	0	145	33	22	24	19	1.97
44121620--44121786	78	2.1	78	90	2	264	38	21	20	19	1.94
44121659--44121819	33	4.2	39	79	16	138	37	21	21	19	1.95
44142554--44142944	124	3.1	124	88	2	534	30	17	15	36	1.91
44143037--44143116	34	2.6	29	75	24	83	48	17	0	33	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44143189--44143218	15	2.0	15	100	0	60	46	46	0	6	1.29
44151461--44151682	27	8.4	27	81	7	224	43	19	16	20	1.88
44151474--44151661	103	1.8	103	84	2	261	43	19	15	21	1.88
44154635--44154720	23	3.9	23	78	6	88	38	23	20	17	1.93
44156971--44157213	50	4.8	50	87	2	335	20	31	22	25	1.98
44158479--44158514	18	1.9	19	94	5	65	50	5	0	44	1.25
44158483--44158525	18	2.3	18	84	11	52	51	6	0	41	1.29
44158772--44158811	17	2.5	15	88	8	53	55	0	0	45	0.99
44160459--44160644	51	3.7	50	79	6	178	24	17	25	32	1.97
44165698--44165747	26	1.9	26	91	0	82	46	10	12	32	1.74
44167848--44167894	23	2.1	22	81	11	60	40	19	21	19	1.92
44171526--44171615	46	2.0	46	97	0	171	43	40	11	5	1.64
44172702--44172789	23	3.6	24	72	6	61	35	10	3	51	1.53
44172976--44173039	27	2.4	25	78	14	67	35	9	3	51	1.50
44173200--44173228	5	6.0	5	96	4	51	20	0	0	79	0.74
44194284--44194326	9	4.6	9	88	11	68	79	0	0	20	0.74
44194283--44194326	10	4.5	10	88	5	72	79	0	0	20	0.73
44204621--44204744	25	5.2	23	80	10	101	39	20	22	17	1.92
44204662--44204744	25	3.3	26	89	3	118	38	21	22	16	1.93
44205091--44205119	13	2.1	14	93	6	51	65	0	0	34	0.93
44205775--44205812	11	3.5	11	96	0	67	0	36	7	55	1.29
44205846--44205882	10	3.9	10	82	10	51	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44208205--44208238	18	1.9	17	88	5	50	29	0	14	55	1.40
44214330--44214373	19	2.5	17	85	10	54	61	0	2	36	1.09
44228388--44228447	20	3.0	21	73	11	63	61	1	3	33	1.22
44229817--44229854	12	2.9	13	77	14	51	31	5	0	63	1.17
44229817--44229855	14	2.9	14	81	11	55	30	5	0	64	1.15
44245644--44245678	11	3.1	11	91	4	52	20	31	0	48	1.50
44245644--44245697	23	2.4	23	79	17	60	24	29	0	46	1.53
44245644--44245697	11	4.8	11	77	22	51	24	29	0	46	1.53
44245667--44245744	40	2.0	40	87	5	113	26	23	0	50	1.50
44248921--44248957	18	2.1	18	89	0	56	21	27	8	43	1.80
44249470--44249505	7	4.8	8	90	10	58	50	0	0	50	1.00
44249470--44249505	15	2.4	15	90	9	56	50	0	0	50	1.00
44249569--44249883	44	7.2	44	75	15	221	50	27	0	21	1.53
44249660--44249819	22	7.2	22	80	6	146	51	27	0	20	1.47
44249727--44249857	37	3.3	38	74	20	126	51	28	0	20	1.48
44249786--44249845	7	8.4	7	80	8	50	53	30	0	16	1.44
44249829--44249883	22	2.5	22	73	5	58	49	25	0	25	1.51
44249793--44249916	37	3.3	38	84	7	139	49	29	0	21	1.50
44249880--44250001	43	2.8	42	80	13	131	48	27	0	23	1.51
44249880--44250003	22	5.6	22	78	15	116	48	28	0	23	1.51
44249971--44250034	29	2.2	29	86	8	87	42	32	0	25	1.55
44250543--44250569	14	1.9	14	100	0	54	44	18	7	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44252688--44253222	125	4.3	126	85	3	740	29	22	17	29	1.97
44252688--44253217	251	2.1	250	92	0	862	30	22	17	29	1.97
44256719--44256772	12	4.7	11	76	15	56	55	7	0	37	1.28
44259224--44259307	42	2.0	42	100	0	168	26	23	11	38	1.90
44262380--44262417	19	2.0	19	85	10	51	28	5	0	65	1.14
44265450--44265489	18	2.2	18	86	0	53	17	30	7	45	1.76
44265731--44265777	21	2.2	21	85	7	60	34	34	23	8	1.85
44266030--44266701	22	28.4	22	71	19	398	42	35	0	21	1.57
44266030--44266695	49	13.9	48	84	9	734	42	35	0	21	1.57
44266428--44266475	15	3.4	15	71	26	50	41	37	0	20	1.53
44266606--44266701	48	2.0	48	93	4	167	39	37	0	22	1.55
44267427--44267819	126	3.1	125	85	3	538	30	22	16	30	1.96
44289315--44289348	18	1.9	18	88	5	52	55	5	2	35	1.39
44293933--44293957	8	3.1	8	100	0	50	52	0	12	36	1.39
44296311--44296351	14	2.9	14	85	7	55	41	4	4	48	1.46
44298925--44298983	30	2.0	30	82	0	73	49	6	8	35	1.60
44299231--44299260	11	2.7	11	94	0	51	33	0	30	36	1.58
44300217--44300255	20	2.0	19	90	5	60	53	7	7	30	1.57
44303558--44303597	19	2.0	21	85	9	57	60	2	0	37	1.11
44305944--44306004	13	4.7	13	76	8	52	45	16	0	37	1.47
44309706--44309749	23	2.0	22	86	4	61	31	4	0	63	1.14
44315290--44315329	21	1.9	21	89	0	62	45	7	2	45	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44321241--44321397	43	3.7	42	80	7	158	31	26	17	24	1.97
44326206--44326275	16	4.4	16	90	0	113	31	1	35	31	1.67
44326254--44326344	45	2.0	44	85	2	119	30	5	28	35	1.80
44326486--44326523	16	2.4	17	82	13	53	52	2	0	44	1.14
44326469--44326754	22	14.0	21	65	22	83	53	3	1	41	1.25
44326569--44326609	13	3.2	12	80	12	55	58	0	0	41	0.98
44326597--44326631	17	2.1	17	100	0	70	65	0	0	34	0.93
44326719--44326753	18	2.0	17	94	5	61	57	0	0	42	0.99
44326524--44326814	61	4.8	60	69	15	192	52	4	1	41	1.33
44326524--44326830	120	2.6	119	94	2	526	52	4	1	41	1.33
44328314--44328343	13	2.3	13	94	0	51	30	13	6	50	1.67
44332125--44332602	120	4.0	120	95	2	865	42	0	4	52	1.26
44332125--44332602	239	2.0	238	95	2	861	42	0	4	52	1.26
44332549--44332583	17	2.0	18	94	5	63	40	0	0	60	0.97
44332739--44332835	45	2.2	45	87	5	135	32	29	5	31	1.80
44332815--44332863	16	3.1	16	93	0	89	20	34	6	38	1.77
44334259--44334664	108	3.7	109	85	6	559	34	13	16	35	1.88
44334625--44334704	40	2.0	40	95	0	142	26	18	21	33	1.96
44334294--44334970	371	1.8	372	85	4	972	35	13	16	34	1.88
44334516--44334810	148	2.0	150	93	1	504	33	14	17	33	1.90
44334665--44334970	115	2.8	107	84	7	364	38	14	15	32	1.87
44335133--44335403	109	2.5	108	88	4	395	27	16	15	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44337754--44337780	14	1.9	14	100	0	54	44	0	7	48	1.31
44341506--44341546	15	2.6	16	84	11	57	48	2	7	41	1.44
44344717--44344774	23	2.6	21	86	8	71	15	6	39	37	1.74
44345323--44346163	73	11.6	72	91	3	1280	33	18	17	31	1.94
44345323--44346163	145	5.8	145	93	2	1338	33	18	17	31	1.94
44345323--44346163	218	3.9	218	91	3	1313	33	18	17	31	1.94
44359332--44359377	20	2.4	19	81	3	56	39	2	58	0	1.10
44359458--44359487	9	3.4	9	90	9	53	20	0	0	80	0.72
44362126--44362201	40	1.9	40	83	5	100	30	26	15	27	1.96
44364885--44364948	6	10.5	6	76	18	53	78	1	15	4	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175