genome.fa.s16.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  114  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35910680--35910830	28	5.4	28	81	6	162	37	13	12	36	1.82
35910699--35910859	28	5.8	28	81	10	159	35	15	14	34	1.88
35911258--35911327	9	7.8	9	90	0	95	25	10	25	38	1.87
35911488--35911512	12	2.1	12	100	0	50	16	24	36	24	1.94
35912862--35912916	27	2.0	27	100	0	110	38	18	10	32	1.85
35914183--35914399	108	2.0	108	94	0	380	29	26	15	29	1.96
35917526--35917580	21	2.6	21	78	15	60	34	5	7	52	1.52
35925071--35925102	16	2.0	16	93	0	55	31	6	9	53	1.58
35943553--35943593	21	2.0	21	85	0	55	21	21	17	39	1.93
35945849--35945883	15	2.3	15	90	0	52	28	31	14	25	1.95
35946015--35946088	7	10.6	7	78	12	64	28	14	0	56	1.39
35948547--35948598	18	2.8	20	83	13	67	53	3	1	40	1.30
35951406--35951439	14	2.5	14	95	4	61	14	0	35	50	1.44
35952369--35952400	11	2.9	11	90	0	55	9	28	25	37	1.87
35953710--35953746	18	2.1	18	94	0	65	18	27	10	43	1.83
35953712--35953755	18	2.4	18	88	0	61	18	27	9	45	1.79
35957272--35957645	126	3.0	125	86	2	543	27	18	17	36	1.93
35957715--35957838	34	3.8	32	76	13	110	42	14	0	42	1.45
35973236--35973275	20	2.0	20	90	0	62	27	10	12	50	1.72
35973221--35973287	34	1.9	35	90	3	109	32	7	11	47	1.68
35974711--35974737	2	13.5	2	100	0	54	51	0	0	48	1.00
35978470--35978506	16	2.3	16	90	0	56	40	2	32	24	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35978425--35978551	61	2.1	61	95	0	227	38	5	27	28	1.79
35978627--35978943	157	2.0	157	97	0	598	44	3	4	47	1.41
35978897--35978931	18	2.0	17	88	5	52	54	0	0	45	0.99
35978996--35979038	15	2.8	16	82	10	63	55	0	0	44	0.99
35979116--35979158	15	2.8	16	82	10	63	55	0	0	44	0.99
35978877--35979292	120	3.5	120	95	1	735	50	4	2	42	1.37
35979241--35979515	91	2.9	93	80	11	283	48	3	3	44	1.35
35979308--35979515	91	2.3	91	88	4	285	46	3	3	45	1.39
35980752--35980776	6	4.2	6	100	0	50	48	0	0	52	1.00
35981311--35981358	21	2.3	20	80	13	53	56	2	8	33	1.41
35988658--35988702	19	2.3	19	88	3	72	22	13	31	33	1.92
35992893--35993063	29	5.8	28	74	14	132	19	16	6	57	1.61
35992896--35993065	58	2.9	58	87	5	234	20	17	6	56	1.62
35992921--35993100	58	3.1	56	83	7	170	20	15	5	58	1.55
35993116--35993176	32	1.9	32	86	0	86	26	14	6	52	1.66
35993150--35993204	28	1.9	29	81	3	67	20	16	7	56	1.63
35995006--35995239	124	1.9	122	81	3	281	35	10	7	46	1.66
35996758--35996817	31	1.9	31	83	6	77	35	11	6	46	1.67
35998246--35998274	10	3.0	10	95	5	51	0	6	0	93	0.36
35998241--35998274	15	2.1	16	89	10	52	0	11	0	88	0.52
35998556--35998691	71	1.9	71	87	3	202	39	11	7	41	1.68
35999003--35999059	30	1.9	30	92	0	96	19	40	0	40	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35999768--35999801	14	2.5	14	90	4	52	70	2	26	0	1.01
36007162--36007190	5	5.8	5	100	0	58	62	37	0	0	0.96
36011236--36011300	29	2.2	29	97	0	121	30	27	3	38	1.72
36011729--36011772	20	2.3	19	84	7	54	22	0	4	72	1.02
36013467--36013500	16	2.1	16	88	5	50	52	0	8	38	1.33
36013474--36013512	20	2.0	20	90	10	62	51	0	2	46	1.14
36014148--36014190	18	2.4	18	80	7	52	46	2	0	51	1.13
36015319--36015369	24	2.1	24	100	0	102	35	23	7	33	1.84
36017102--36017296	93	2.1	92	88	4	286	44	4	4	47	1.41
36017329--36017362	17	2.0	17	94	0	59	44	5	0	50	1.26
36017329--36017367	17	2.4	16	87	8	53	43	5	0	51	1.24
36017333--36017372	17	2.3	18	83	12	57	47	5	0	47	1.24
36017452--36017503	15	3.6	15	80	12	56	44	0	1	53	1.11
36017328--36017619	120	2.4	119	89	6	439	41	2	5	50	1.38
36017401--36017584	59	3.1	59	65	18	146	41	1	7	50	1.39
36017568--36017602	18	2.0	17	88	5	52	45	0	0	54	0.99
36017556--36017869	154	2.0	156	96	1	578	47	5	3	44	1.41
36017722--36017756	18	2.0	17	88	5	52	45	0	0	54	0.99
36017557--36017792	75	3.1	75	66	16	212	46	2	3	47	1.34
36017988--36018026	16	2.4	16	86	0	51	28	33	2	35	1.71
36018001--36018057	16	3.6	16	95	0	87	33	36	0	29	1.58
36020359--36020403	6	7.5	6	80	9	56	44	2	37	15	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36022909--36022974	29	2.3	29	91	0	105	39	27	7	25	1.83
36028752--36028791	21	1.9	21	89	0	62	47	5	0	47	1.24
36030193--36030589	175	2.3	174	86	3	537	46	7	14	31	1.73
36041647--36041689	21	2.0	21	86	0	59	23	11	9	55	1.64
36045945--36045980	16	2.2	17	90	5	56	50	0	8	41	1.33
36056606--36056676	34	2.1	34	82	15	85	49	2	0	47	1.16
36057200--36057303	52	2.0	52	82	14	126	56	8	0	33	1.36
36057325--36057377	19	2.8	18	81	18	56	50	13	0	35	1.41
36065424--36065454	12	2.6	12	94	0	53	45	0	3	51	1.17
36067221--36067710	88	5.6	88	89	1	718	23	25	23	26	2.00
36067470--36067696	44	5.2	44	68	15	164	23	25	25	25	2.00
36078904--36078974	34	2.1	34	94	0	124	39	28	8	23	1.84
36090442--36090483	22	1.9	22	95	0	75	9	21	28	40	1.84
36094624--36095024	40	9.9	40	85	4	486	31	31	17	19	1.95
36094624--36095018	121	3.3	121	85	6	507	31	31	17	19	1.95
36094624--36095024	81	5.0	81	84	4	506	31	31	17	19	1.95
36102837--36102933	13	7.4	13	77	2	86	42	2	17	38	1.61
36102824--36102883	26	2.3	26	85	2	75	45	1	18	35	1.60
36102837--36102948	53	2.1	53	83	3	136	42	1	17	37	1.60
36102837--36102933	26	3.7	25	79	5	95	42	2	17	38	1.61
36110337--36110379	22	2.0	22	95	0	77	9	20	27	41	1.83
36110620--36110785	43	3.8	43	76	10	176	31	31	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36110600--36110779	87	2.1	87	93	1	308	31	32	17	19	1.95
36111114--36111158	21	2.1	21	84	8	56	6	42	15	35	1.73
36111129--36111299	66	2.6	65	84	4	209	12	28	18	39	1.88
36116885--36117004	9	14.2	9	76	13	121	32	1	18	47	1.58
36116889--36117004	25	4.6	25	86	0	169	32	1	18	46	1.60
36116885--36117004	50	2.4	50	91	0	195	32	1	18	47	1.58
36116885--36117031	50	2.9	49	84	4	170	30	2	17	49	1.58
36117053--36117115	12	5.2	12	72	1	54	28	3	17	50	1.61
36120099--36120152	23	2.4	23	84	3	65	29	46	1	22	1.62
36120590--36120620	15	2.1	15	93	0	53	41	32	0	25	1.56
36120908--36121147	41	5.9	41	74	6	209	29	25	22	22	1.99
36120907--36121147	82	3.0	82	78	7	267	29	24	22	23	1.99
36121243--36121318	40	1.9	40	86	0	107	21	21	19	38	1.94
36133456--36133658	40	5.1	40	92	0	316	44	27	16	11	1.82
36135342--36135384	23	1.9	23	90	4	70	74	2	0	23	0.93
36143056--36143130	27	2.8	27	83	0	96	22	24	18	34	1.96
36143149--36143487	161	2.1	161	85	0	462	24	22	17	35	1.96
36145810--36145847	16	2.4	16	95	0	67	60	0	0	39	0.97
36145814--36145853	16	2.7	14	88	7	53	57	0	0	42	0.98
36147764--36147803	19	2.1	19	86	9	55	67	20	12	0	1.22
36150720--36150744	6	4.2	6	100	0	50	52	0	0	48	1.00
36152190--36152746	114	4.9	114	89	2	802	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36152989--36153030	15	2.9	14	82	6	57	21	0	40	38	1.53
36153329--36153362	14	2.4	14	90	9	52	23	0	44	32	1.54
36154131--36154358	113	2.0	114	93	0	395	49	10	13	26	1.75
36154245--36154883	145	4.4	145	94	2	1151	44	13	16	25	1.85
36154245--36154883	288	2.2	291	95	1	1167	44	13	16	25	1.85
36156949--36156977	14	2.1	14	100	0	58	20	0	6	72	1.07
36158627--36158784	43	3.7	42	75	14	144	27	14	25	32	1.95
36158643--36158823	86	2.1	86	80	4	195	25	16	25	32	1.96
36166512--36166591	38	2.1	38	95	0	142	36	6	18	38	1.76
36166550--36167075	184	2.9	184	96	0	953	34	6	15	43	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175