genome.fa.s16.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  68  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20311899--20313261	23	60.0	23	69	7	443	40	24	4	30	1.75
20311893--20313271	182	7.6	182	89	0	2136	40	24	4	30	1.75
20312294--20312504	113	1.9	113	81	5	257	42	23	4	29	1.73
20313862--20313999	37	3.7	37	96	0	240	49	9	5	35	1.59
20313944--20314165	57	3.9	57	89	2	340	47	9	4	38	1.56
20314088--20314122	9	3.9	9	88	0	52	48	14	0	37	1.44
20314086--20314122	18	2.1	18	94	0	65	51	13	0	35	1.41
20314104--20314205	37	2.8	37	88	5	161	48	9	5	36	1.61
20313898--20314534	206	3.1	205	97	0	1193	47	9	4	38	1.57
20313792--20314465	149	4.5	150	78	8	628	47	8	4	38	1.56
20314150--20314372	57	3.9	57	87	3	326	46	9	4	38	1.59
20314058--20314262	94	2.2	92	86	5	295	46	9	4	38	1.58
20314294--20314328	9	3.9	9	88	0	52	48	14	0	37	1.44
20314292--20314328	18	2.1	18	94	0	65	51	13	0	35	1.41
20314310--20314411	37	2.8	37	90	0	168	48	8	6	36	1.61
20314364--20314520	57	2.8	57	92	0	253	47	7	5	40	1.53
20314264--20314468	94	2.2	92	87	1	302	47	8	5	39	1.56
20314500--20314690	9	21.9	9	74	8	171	45	19	2	32	1.62
20314501--20314726	34	6.8	34	72	13	145	46	19	1	32	1.60
20314496--20314693	86	2.3	85	79	7	213	45	20	2	32	1.62
20320572--20320596	12	2.1	12	100	0	50	16	20	16	48	1.82
20320584--20320687	42	2.5	42	93	0	172	30	21	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20320659--20320716	29	2.0	29	96	0	107	22	22	24	31	1.99
20320616--20320755	71	2.0	71	91	2	228	31	22	22	24	1.98
20320726--20320844	40	2.9	40	87	5	168	22	19	21	36	1.95
20321909--20323323	46	31.1	46	71	6	678	40	24	4	31	1.75
20321909--20323323	23	62.3	23	70	10	483	40	24	4	31	1.75
20321877--20323381	182	8.3	182	84	2	1878	40	24	4	30	1.75
20321877--20323380	362	4.1	363	87	1	1928	40	24	4	30	1.75
20322861--20323183	136	2.4	136	87	1	432	40	23	4	30	1.75
20333054--20333108	20	2.8	20	80	0	65	41	18	30	9	1.81
20340110--20340148	14	2.7	14	84	4	51	58	2	2	35	1.25
20341575--20341608	8	4.4	8	85	7	52	0	0	11	88	0.52
20341575--20341613	11	3.2	12	82	10	53	0	0	12	87	0.55
20341894--20342205	100	3.1	100	91	0	489	24	18	22	34	1.96
20341895--20342187	50	5.9	50	72	3	239	23	18	22	35	1.95
20342200--20342882	217	3.1	217	93	0	1150	29	20	17	32	1.96
20342654--20342814	44	3.7	44	79	8	143	28	19	18	32	1.96
20342654--20342766	41	2.7	41	83	4	136	29	20	17	32	1.96
20342821--20343255	129	3.4	129	90	2	653	25	22	18	33	1.97
20344473--20344517	7	6.4	7	82	14	58	15	15	0	68	1.21
20344473--20344517	13	3.2	15	84	12	60	15	15	0	68	1.21
20345387--20345424	13	3.0	13	88	3	51	10	7	0	81	0.87
20345400--20345448	12	3.7	14	81	13	50	14	2	8	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20345421--20345464	6	7.3	6	97	0	79	15	2	15	65	1.36
20345445--20345530	42	2.1	41	83	12	106	10	8	9	72	1.29
20355235--20355273	14	2.7	14	84	4	51	58	2	2	35	1.25
20360845--20360883	20	1.9	20	89	5	60	48	0	2	48	1.15
20361152--20361210	10	6.4	9	76	7	57	22	40	3	33	1.70
20365727--20365893	81	2.1	81	90	0	262	34	19	18	27	1.95
20371216--20371254	9	4.1	9	86	6	51	0	17	0	82	0.68
20372034--20372064	6	5.2	6	92	0	53	83	12	0	3	0.75
20394399--20394592	51	3.8	51	75	10	175	25	15	26	32	1.95
20394598--20394686	46	2.0	44	84	8	117	24	17	24	32	1.97
20394797--20394869	37	1.9	38	83	2	94	46	4	19	30	1.68
20396517--20396583	25	2.7	25	73	15	66	49	7	10	32	1.65
20402367--20402411	23	1.9	24	86	4	65	35	2	11	51	1.50
20402827--20402864	19	2.0	19	85	10	51	21	42	0	36	1.53
20413126--20413170	23	1.9	24	86	4	65	35	2	11	51	1.50
20413586--20413623	19	2.0	19	85	10	51	21	42	0	36	1.53
20424172--20424212	20	2.0	20	85	4	55	19	4	9	65	1.40
20427736--20427794	24	2.6	23	86	5	75	8	20	18	52	1.71
20428826--20428869	23	1.9	23	85	0	61	18	27	18	36	1.94
20433077--20433179	51	2.0	51	98	0	197	24	7	18	49	1.73
20433096--20433181	26	3.3	27	65	22	76	24	9	19	46	1.79
20434929--20434990	32	2.0	32	87	6	92	32	19	4	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20436586--20437151	125	4.5	124	83	5	710	29	17	23	29	1.97
20436586--20437151	126	4.5	124	83	5	701	29	17	23	29	1.97
20436586--20437151	250	2.3	250	87	3	784	29	17	23	29	1.97
20438297--20438679	22	17.0	22	76	12	334	26	0	29	42	1.61
20438297--20438671	43	8.3	43	79	10	378	26	0	29	42	1.61
20438454--20438503	8	6.5	8	78	17	52	30	0	22	48	1.51
20438444--20438547	52	2.0	52	84	3	138	30	0	25	43	1.61
20438324--20438639	160	2.0	160	88	3	467	27	0	28	43	1.62
20439231--20439273	18	2.4	18	84	0	59	46	9	27	16	1.77
20439891--20439922	7	4.7	7	92	7	57	56	15	0	28	1.40
20439891--20439922	13	2.4	14	94	5	57	56	15	0	28	1.40
20440091--20440128	20	1.9	20	84	10	51	55	7	2	34	1.43
20441066--20441163	51	1.9	51	87	4	144	45	3	24	26	1.67
20441125--20441201	11	6.9	11	73	24	72	45	1	27	25	1.61
20441125--20441201	33	2.3	33	82	10	102	45	1	27	25	1.61
20441932--20441971	21	2.0	21	85	5	55	45	0	5	50	1.23
20442513--20442635	61	2.0	61	98	0	237	31	24	17	26	1.97
20449337--20449389	28	2.0	26	82	10	63	35	1	3	58	1.27
20450492--20450538	7	6.7	7	95	0	85	27	2	14	55	1.51
20451190--20451232	18	2.4	18	88	0	59	18	27	9	44	1.80
20454882--20455296	126	3.3	126	92	2	640	28	22	16	31	1.96
20455336--20455513	94	1.9	98	84	7	233	39	15	5	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20455564--20455629	33	1.9	33	87	6	96	48	39	0	12	1.40
20457538--20457628	48	1.9	47	88	2	137	39	26	15	18	1.90
20464500--20464668	27	6.2	27	84	4	196	30	26	15	27	1.96
20464512--20464667	82	1.9	81	88	3	233	29	28	15	26	1.96
20465958--20465999	1	42.0	1	90	0	66	95	0	0	4	0.28
20466025--20466049	13	1.9	13	100	0	50	96	4	0	0	0.24
20467360--20467531	79	2.2	80	89	1	265	26	29	20	23	1.99
20467362--20467584	40	5.6	40	86	5	265	26	28	20	24	1.99
20467360--20467584	79	2.8	80	84	5	251	27	28	20	24	1.99
20467362--20467582	119	1.9	119	81	5	277	26	28	20	24	1.99
20475242--20475465	40	5.6	40	87	4	274	26	28	20	24	1.99
20477347--20477532	41	4.5	41	95	1	311	22	29	19	29	1.98
20477347--20477586	82	2.9	81	87	6	290	24	27	18	30	1.98
20477347--20477586	123	2.0	123	82	8	301	24	27	18	30	1.98
20483299--20483538	82	2.9	81	88	6	335	23	27	19	30	1.98
20483299--20483484	41	4.5	41	95	1	320	22	28	19	29	1.98
20483298--20483538	123	2.0	123	85	8	330	23	26	19	30	1.98
20487722--20487828	20	5.8	18	68	22	53	52	3	3	40	1.37
20487754--20487831	37	2.1	36	81	13	97	53	2	2	41	1.28
20489121--20489246	28	4.4	28	82	7	144	28	23	23	23	2.00
20489121--20489246	60	2.2	56	81	8	146	28	23	23	23	2.00
20490148--20490179	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20494893--20495032	72	2.0	71	89	1	217	31	22	27	19	1.98
20495521--20495551	15	2.1	15	100	0	62	19	0	32	48	1.49
20495626--20495826	100	2.0	100	94	0	348	40	13	21	24	1.90
20500350--20500393	17	2.5	18	88	3	63	47	0	11	40	1.39
20500380--20500475	9	10.4	9	73	12	70	54	4	2	39	1.32
20500383--20500452	13	5.3	13	72	8	61	51	2	1	44	1.25
20500380--20500477	48	2.0	48	96	0	178	55	4	2	38	1.31
20505530--20505563	18	1.9	18	88	5	52	44	2	20	32	1.67
20513233--20513279	2	23.5	2	100	0	94	51	0	48	0	1.00
20518474--20518518	22	2.0	22	91	0	72	33	2	15	48	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175