genome.fa.s16.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  48  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13825651--13825675	13	1.9	13	100	0	50	24	8	28	40	1.83
13832353--13832460	41	2.6	41	82	5	112	18	20	25	36	1.95
13832392--13832498	41	2.6	41	80	5	108	19	15	24	40	1.91
13834936--13834986	24	2.1	24	100	0	102	29	3	21	45	1.70
13840735--13840958	27	8.3	27	82	2	202	41	16	17	25	1.89
13840735--13840941	54	3.9	54	81	2	229	40	16	17	24	1.90
13840745--13840942	80	2.5	81	85	2	247	39	17	18	23	1.92
13841125--13841252	26	4.9	26	73	1	96	20	20	20	39	1.93
13841125--13841232	52	2.1	52	80	3	119	20	19	20	39	1.92
13841359--13841446	30	2.9	30	74	0	95	25	25	20	29	1.99
13843351--13843410	25	2.3	26	85	2	77	45	10	11	33	1.74
13852309--13852534	7	31.7	7	72	8	62	42	34	1	21	1.64
13852388--13852471	21	4.0	21	78	9	71	47	33	0	19	1.49
13852338--13852539	14	14.2	14	71	7	120	44	31	1	21	1.64
13852581--13852616	7	5.3	7	86	6	56	44	38	0	16	1.48
13852582--13852644	13	4.5	14	71	15	58	46	34	0	19	1.50
13853037--13853169	42	3.3	39	73	11	108	33	18	22	25	1.96
13853063--13853347	41	6.9	40	81	8	306	30	24	23	22	1.99
13853063--13853351	123	2.3	121	83	6	341	30	23	23	22	1.99
13853733--13853782	25	2.0	25	88	0	73	38	12	12	38	1.80
13856019--13856049	6	5.3	6	96	3	55	54	0	12	32	1.38
13857701--13857727	13	2.1	13	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13857685--13857723	16	2.3	16	86	8	51	33	5	0	61	1.18
13858038--13858471	144	3.0	142	82	9	510	40	4	10	45	1.58
13858442--13858489	20	2.5	19	73	6	51	33	0	16	50	1.46
13865677--13865712	18	2.0	18	100	0	72	33	5	5	55	1.46
13868194--13868452	134	1.9	134	96	0	473	35	19	14	30	1.92
13874301--13874487	49	3.8	48	76	8	189	27	15	30	26	1.96
13874317--13874536	98	2.2	98	86	4	293	25	15	30	29	1.95
13888840--13888928	40	2.2	40	85	0	115	19	25	20	34	1.96
13888840--13888942	40	2.6	40	82	0	107	17	27	21	33	1.96
13901347--13901499	41	3.7	42	85	3	188	21	29	13	35	1.91
13901409--13901474	20	3.2	20	71	12	71	16	33	13	36	1.88
13912716--13912836	35	3.5	35	77	0	125	28	23	25	23	2.00
13928427--13928500	25	2.9	25	88	6	96	32	14	13	39	1.86
13930629--13930667	18	2.2	17	86	4	51	7	10	0	82	0.86
13939363--13939414	26	2.0	26	88	7	79	32	0	11	55	1.36
13940240--13940275	18	2.0	18	88	0	54	33	2	0	63	1.08
13941613--13941664	25	2.1	25	89	7	79	32	0	1	65	1.04
13947948--13947998	26	1.9	27	92	4	86	5	39	0	54	1.24
13962584--13962711	33	3.9	33	82	2	141	16	21	18	42	1.88
13962762--13962874	57	2.0	57	87	0	163	23	30	9	37	1.87
13966467--13966538	21	3.3	23	74	14	73	19	16	38	25	1.92
13968930--13969006	23	3.3	24	77	10	63	25	1	10	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13973281--13973391	25	4.5	25	67	3	82	36	18	24	20	1.95
13973396--13973484	25	3.7	23	69	8	61	30	20	29	20	1.97
13973477--13973536	26	2.3	26	82	5	77	41	21	18	18	1.90
13979839--13979872	17	2.0	17	94	0	59	50	0	0	50	1.00
13988568--13988634	31	2.2	31	83	0	89	38	7	10	43	1.67
13995667--13995771	50	2.1	52	90	3	169	51	4	12	31	1.60
13995830--13995868	18	2.2	18	86	4	53	58	2	0	38	1.12
13998416--13998512	43	2.3	42	78	7	106	52	9	12	25	1.68
13999949--14000007	26	2.3	26	87	0	82	23	13	30	32	1.93
14006064--14006183	41	2.9	41	82	0	132	27	18	25	29	1.98
14006525--14006600	22	3.3	22	71	10	62	31	6	17	44	1.74
14006537--14006613	25	3.2	25	75	17	90	29	7	18	44	1.78
14006522--14006613	47	2.0	45	89	4	139	31	7	17	43	1.77
14013097--14013122	2	13.0	2	100	0	52	50	0	0	50	1.00
14013745--14013864	41	2.9	41	87	0	150	27	20	25	27	1.99
14014218--14014292	25	3.2	25	76	18	97	30	8	17	44	1.77
14014203--14014292	45	2.0	45	95	0	162	32	7	16	43	1.77
14014203--14014271	20	3.2	20	77	18	75	34	7	14	43	1.73
14021115--14021158	22	2.0	22	100	0	88	27	18	13	40	1.88
14044950--14045025	40	1.9	40	83	5	100	31	21	35	11	1.89
14050896--14051051	27	5.7	27	82	7	190	23	14	19	42	1.88
14050896--14051049	82	1.9	81	86	4	220	22	14	19	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14055614--14055648	17	2.1	17	94	0	61	42	5	31	20	1.75
14058990--14059052	26	2.4	26	79	12	67	46	19	11	23	1.82
14059078--14059382	27	11.3	27	86	4	357	23	13	19	42	1.87
14059078--14059382	54	5.6	54	85	2	396	23	13	19	42	1.87
14059078--14059382	81	3.8	81	85	1	405	23	13	19	42	1.87
14062155--14062180	3	8.7	3	100	0	52	65	0	0	34	0.93
14070906--14071053	48	3.1	47	82	6	181	22	27	22	28	1.99
14074013--14074051	20	2.0	20	85	10	53	56	15	7	20	1.63
14077829--14077859	11	2.8	11	90	0	53	29	19	32	19	1.96
14095226--14095275	26	1.9	26	95	0	91	24	16	20	40	1.91
14096400--14096528	53	2.4	54	88	1	188	24	21	32	20	1.98
14103997--14104025	13	2.2	13	100	0	58	37	27	13	20	1.91
14111445--14111491	18	2.6	18	100	0	94	40	0	4	55	1.19
14111589--14111630	11	3.8	11	90	0	66	21	11	45	21	1.84
14111589--14111630	22	1.9	22	95	0	75	21	11	45	21	1.84
14115716--14115783	29	2.3	29	85	5	84	22	16	17	44	1.87
14116745--14116809	30	2.2	31	77	20	77	50	0	1	47	1.10
14116747--14116810	29	2.1	31	86	11	89	50	0	1	48	1.10
14129928--14129998	29	2.4	29	88	0	97	19	19	22	38	1.94
14132839--14132929	26	3.5	26	77	8	94	14	18	37	29	1.90
14134595--14134707	51	2.3	51	86	6	151	26	30	15	27	1.95
14137709--14137803	45	2.1	45	90	0	154	26	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14143348--14143396	25	2.0	25	83	0	62	22	16	16	44	1.86
14152804--14152865	33	1.9	32	83	9	81	46	9	6	37	1.62
14160861--14161028	82	2.1	81	86	3	230	36	13	30	20	1.90
14160853--14161030	41	4.4	41	79	4	173	35	13	29	21	1.92
14162430--14162476	14	3.3	14	77	14	51	27	12	12	46	1.78
14162461--14162542	14	5.6	16	63	21	54	31	15	13	39	1.87
14162469--14162543	28	2.7	28	95	0	141	33	14	13	38	1.85
14163801--14163894	36	2.6	36	94	0	161	39	15	22	22	1.92
14173969--14174133	45	3.7	45	85	0	233	28	13	23	35	1.92
14188251--14188289	18	2.2	18	90	9	62	71	2	20	5	1.17
14190044--14190115	33	2.1	34	92	2	119	38	6	13	40	1.72
14193187--14193240	25	2.1	27	82	6	67	59	3	0	37	1.15
14195703--14195731	4	7.2	4	100	0	58	27	48	24	0	1.51
14201159--14201197	15	2.6	15	83	0	60	51	0	0	48	1.00
14214612--14214653	23	1.9	21	90	9	66	23	9	14	52	1.71
14217170--14217256	20	4.3	20	72	7	59	42	20	25	11	1.86
14226584--14226635	22	2.3	23	83	6	63	44	23	11	21	1.84
14226876--14226912	18	2.0	19	94	5	67	45	27	0	27	1.54
14240535--14240588	17	3.2	17	78	5	65	35	22	14	27	1.93
14257647--14257836	102	1.9	102	93	2	328	30	13	12	44	1.80
14260315--14260729	138	3.0	135	90	5	638	40	6	5	46	1.55
14266947--14267006	2	30.5	2	77	3	50	36	1	5	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14266905--14266996	31	3.0	31	76	17	95	33	3	4	58	1.34
14266920--14267011	37	2.6	35	81	6	98	33	2	4	59	1.29
14267274--14267336	22	2.6	23	78	12	65	17	6	4	71	1.25
14290709--14290803	48	2.0	48	93	0	163	41	20	17	21	1.91
14295845--14295938	46	2.0	48	91	4	156	43	20	14	21	1.87
14315973--14316218	84	2.9	84	92	0	402	33	26	18	21	1.96
14315939--14316259	41	7.7	42	78	7	289	32	26	17	22	1.97
14316019--14316258	125	1.9	126	82	4	297	32	27	18	22	1.97
14319518--14319600	32	2.6	32	94	0	148	39	19	4	36	1.73
14321774--14321862	46	1.9	46	100	0	178	26	13	38	21	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175