genome.fa.s16.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  119  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37438127--37438187	26	2.3	26	83	5	70	57	4	14	22	1.57
37440524--37440605	27	2.8	29	87	10	105	17	21	29	31	1.96
37440586--37440689	42	2.5	42	100	0	208	22	15	28	33	1.94
37440668--37440717	26	1.9	26	95	0	91	18	24	30	28	1.97
37440521--37440790	143	1.9	144	94	0	479	21	17	28	32	1.96
37440628--37440891	102	2.6	101	93	1	447	21	17	27	33	1.96
37445716--37445769	19	2.8	19	94	0	99	37	16	9	37	1.81
37445693--37445769	38	1.9	40	87	10	113	38	16	7	36	1.78
37448185--37448222	15	2.6	15	91	4	60	44	0	0	55	0.99
37448411--37448612	87	2.3	87	84	5	248	37	21	9	31	1.86
37448995--37449064	9	7.7	9	71	15	54	27	2	1	68	1.12
37448993--37449079	38	2.3	38	88	4	122	29	3	2	64	1.22
37448987--37449066	10	8.4	10	74	10	62	28	2	1	67	1.11
37449014--37449078	19	3.4	19	76	16	80	29	3	3	64	1.23
37448977--37449063	28	3.1	27	81	6	111	31	3	1	64	1.17
37449916--37449958	18	2.4	18	92	0	68	69	0	0	30	0.88
37450709--37450749	19	2.2	19	86	8	57	7	14	2	75	1.12
37452345--37452382	19	2.0	19	85	10	51	47	2	5	44	1.39
37458096--37458163	18	3.4	20	74	13	59	50	0	1	48	1.10
37458115--37458163	23	2.1	23	88	7	73	51	0	2	46	1.12
37458288--37458323	17	2.1	18	89	5	56	41	2	0	55	1.14
37458290--37458332	17	2.5	17	84	3	50	46	2	2	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37464009--37464053	19	2.3	20	81	14	58	40	13	0	46	1.43
37465515--37465568	24	2.2	24	83	6	65	16	27	31	24	1.96
37469314--37469362	23	2.1	23	92	0	80	36	20	18	24	1.94
37473648--37473699	26	2.0	26	85	3	70	50	1	1	46	1.23
37475914--37475955	21	2.0	21	100	0	84	23	23	19	33	1.97
37479186--37479222	13	2.8	13	91	0	56	16	24	43	16	1.87
37479616--37479685	24	2.9	25	82	14	76	12	2	10	74	1.18
37479607--37479661	23	2.3	23	81	9	58	12	5	9	72	1.26
37479640--37479699	9	6.9	9	72	14	54	18	3	5	73	1.16
37479640--37479709	33	2.1	32	82	10	79	17	2	5	74	1.14
37487420--37487570	69	2.2	69	86	0	203	31	27	22	19	1.98
37490358--37490562	69	3.0	68	82	2	239	32	23	23	20	1.98
37490515--37490659	50	2.9	50	84	2	184	32	24	25	17	1.97
37490628--37490936	69	4.5	69	80	4	293	31	24	22	21	1.98
37490612--37490899	69	4.2	68	81	3	299	31	23	24	20	1.98
37490612--37490899	137	2.1	138	83	3	357	31	23	24	20	1.98
37497714--37497796	42	2.0	42	87	0	121	48	13	8	30	1.72
37497715--37497809	42	2.3	42	83	1	111	49	13	6	30	1.67
37497827--37497866	19	2.2	18	95	4	71	42	15	2	40	1.60
37500790--37500844	26	2.1	26	96	0	101	67	9	3	20	1.34
37500802--37500845	13	3.4	13	75	12	54	65	6	2	25	1.28
37501334--37501414	42	1.9	42	94	0	144	53	14	2	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37501334--37501427	42	2.3	42	88	5	138	53	14	2	29	1.53
37502873--37502913	20	2.0	21	90	4	66	17	26	9	46	1.79
37503308--37503415	40	2.7	40	69	9	105	32	18	24	25	1.97
37503230--37503743	195	2.7	187	81	7	552	32	16	21	29	1.95
37503267--37503746	188	2.5	189	82	7	549	32	16	20	30	1.95
37504533--37504585	20	2.6	20	81	3	61	18	0	35	45	1.50
37504533--37504733	7	28.3	7	68	8	84	19	2	32	44	1.66
37505733--37505944	7	29.7	7	66	7	59	22	1	30	45	1.63
37506674--37506704	15	2.1	15	93	0	53	6	12	22	58	1.58
37507873--37507903	9	3.4	9	90	0	53	41	22	9	25	1.84
37508921--37508973	20	2.6	20	81	3	61	43	7	0	49	1.31
37509018--37509060	21	2.1	20	86	4	59	44	9	0	46	1.35
37508952--37509271	120	2.7	120	95	0	568	42	9	2	46	1.47
37509138--37509184	20	2.3	21	88	3	69	42	8	0	48	1.33
37509368--37509579	9	24.0	9	80	7	195	46	20	0	33	1.51
37509355--37509444	45	2.0	45	100	0	180	46	20	0	33	1.51
37509368--37509577	79	2.8	74	91	7	320	46	20	0	32	1.51
37514607--37514635	14	2.1	14	93	6	51	34	0	10	55	1.34
37516825--37516941	20	6.0	19	73	16	73	58	0	5	34	1.28
37516865--37516930	10	7.0	10	77	19	63	60	0	4	34	1.17
37516865--37516919	10	5.5	11	80	20	68	60	0	5	34	1.20
37517410--37517442	8	4.4	8	88	11	52	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37521610--37521679	23	3.3	22	76	13	74	44	8	0	47	1.34
37522726--37522776	23	2.3	23	86	3	68	50	1	3	43	1.31
37527673--37527728	27	1.9	28	82	13	69	42	16	8	32	1.79
37536415--37536456	13	3.2	13	96	0	75	30	7	19	42	1.78
37537150--37537280	34	3.8	34	78	6	138	38	1	14	45	1.54
37537350--37537596	125	2.0	124	84	5	320	37	17	15	29	1.91
37540662--37540724	24	2.5	26	77	17	78	53	1	1	42	1.19
37541121--37541157	18	2.1	18	89	0	56	43	8	24	24	1.81
37542721--37542747	10	2.7	10	100	0	54	74	0	0	25	0.83
37542905--37542973	30	2.3	30	89	0	102	33	1	31	33	1.67
37549255--37549304	22	2.3	21	76	10	55	30	0	2	68	1.01
37549366--37549399	10	3.5	10	92	8	61	38	0	0	61	0.96
37549576--37549606	15	2.1	15	93	0	53	77	0	0	22	0.77
37558606--37558634	9	3.0	10	90	10	51	58	0	20	20	1.39
37558722--37558760	6	6.5	6	93	0	60	58	0	25	15	1.37
37562807--37562944	33	4.1	32	71	9	114	28	13	26	31	1.94
37562755--37562959	101	2.0	100	92	0	338	30	14	25	29	1.95
37563867--37563899	16	2.0	17	88	5	50	63	21	3	12	1.41
37583837--37583878	19	2.2	19	87	12	59	45	0	14	40	1.45
37583872--37584027	62	2.5	60	81	13	181	32	10	16	41	1.82
37584168--37584323	41	3.8	41	82	2	172	20	20	27	31	1.97
37585584--37585625	21	2.0	22	86	13	61	21	4	14	59	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37586607--37586710	49	2.1	49	92	0	172	30	7	10	50	1.65
37588087--37588129	21	2.0	21	86	8	61	34	0	6	58	1.25
37588146--37588455	28	10.7	27	66	19	110	41	0	2	54	1.22
37588255--37588284	15	1.9	16	93	6	53	43	0	6	50	1.28
37588094--37588559	117	4.0	119	95	2	820	41	1	3	53	1.26
37588330--37588375	22	2.0	22	84	12	58	39	2	4	54	1.32
37588513--37588547	17	2.1	17	100	0	70	34	0	0	65	0.93
37591971--37592117	60	2.5	59	82	8	165	46	0	2	50	1.20
37598950--37598998	5	10.4	5	83	16	61	22	0	0	77	0.77
37598957--37598998	13	3.2	13	87	12	59	23	0	0	76	0.79
37598946--37598998	18	2.9	18	86	13	74	22	0	0	77	0.77
37598946--37598995	22	2.3	21	83	16	66	22	0	0	78	0.76
37598946--37598996	19	2.8	19	88	11	72	23	0	0	76	0.79
37599147--37599202	3	19.7	3	78	7	55	28	5	1	64	1.26
37600733--37600794	17	3.6	17	83	14	65	17	0	11	70	1.15
37600717--37600812	6	18.0	5	77	14	61	15	1	10	72	1.16
37617443--37617959	132	4.0	132	90	3	773	30	20	26	23	1.98
37620279--37620536	46	5.4	45	72	22	170	35	15	20	28	1.93
37620345--37620547	46	4.3	48	85	8	222	36	14	21	28	1.92
37620279--37620547	98	2.7	98	92	0	439	35	14	21	28	1.93
37620443--37620658	37	5.3	44	87	9	199	37	14	21	26	1.92
37620511--37620656	37	4.0	37	93	1	242	36	16	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37621566--37621608	18	2.4	18	80	7	52	20	2	4	72	1.14
37622976--37623172	98	2.0	98	93	2	333	30	10	21	37	1.87
37629220--37629251	3	10.7	3	100	0	64	0	0	65	34	0.93
37629489--37629537	23	2.1	23	96	0	89	26	2	22	48	1.61
37631314--37631358	18	2.6	17	82	6	63	33	0	4	62	1.15
37631327--37631369	9	4.7	9	82	5	59	25	0	6	67	1.15
37631328--37631371	10	4.6	10	83	8	56	25	0	6	68	1.14
37631320--37631359	18	2.2	18	100	0	80	30	0	5	65	1.14
37637551--37637688	25	5.5	24	68	16	77	18	25	21	34	1.96
37637659--37637814	73	2.1	73	92	2	269	21	21	21	34	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175