genome.fa.s16.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  96  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30605985--30606104	45	2.7	44	75	13	129	31	20	21	26	1.98
30607598--30607686	16	5.7	15	72	15	74	29	2	4	64	1.25
30607604--30607684	30	2.6	31	82	7	92	30	2	4	61	1.30
30607650--30607686	18	2.1	18	94	0	65	32	2	5	59	1.34
30607604--30607700	30	3.2	29	72	16	79	31	3	5	59	1.35
30607884--30607926	21	2.1	20	83	12	52	13	6	4	74	1.19
30608043--30608077	15	2.3	15	100	0	70	20	0	14	65	1.26
30622877--30623080	82	2.5	82	94	0	354	50	15	6	26	1.68
30623153--30623584	159	2.7	155	81	5	508	32	14	15	37	1.87
30623693--30623734	22	2.0	22	81	13	52	7	19	7	66	1.39
30625838--30625863	6	4.3	6	100	0	52	15	69	0	15	1.20
30628133--30628169	9	4.0	9	89	3	56	21	2	8	67	1.29
30628191--30628236	18	2.6	18	82	6	58	34	2	2	60	1.21
30634562--30634591	5	5.8	5	96	4	51	20	3	0	76	0.92
30634722--30634760	20	2.0	19	90	5	60	64	0	0	35	0.94
30650565--30650761	106	1.9	105	80	6	236	37	10	7	44	1.68
30651032--30651218	98	1.9	97	87	3	277	47	1	4	46	1.31
30651142--30651199	26	2.2	27	82	11	68	44	1	1	51	1.21
30655831--30656069	51	4.8	49	77	6	210	30	24	17	27	1.97
30655828--30656069	101	2.4	100	84	5	301	30	24	17	27	1.97
30658552--30658606	26	2.1	26	86	6	76	18	7	20	54	1.66
30659561--30659585	13	1.9	13	100	0	50	16	4	0	80	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30660453--30660630	93	1.9	93	79	8	202	37	7	2	52	1.45
30660477--30660554	38	2.1	37	83	7	95	35	7	2	53	1.43
30661011--30661153	72	2.0	72	91	0	232	28	16	18	36	1.93
30664748--30664810	33	2.0	32	84	6	83	58	4	14	22	1.54
30666158--30666191	17	2.1	16	88	5	50	38	5	0	55	1.24
30666823--30666879	20	3.1	18	80	14	55	59	0	3	36	1.14
30666850--30666890	9	4.8	9	79	8	50	58	0	2	39	1.11
30674275--30674328	14	3.9	14	70	20	51	1	20	0	77	0.86
30674279--30674332	27	2.1	25	89	6	81	1	22	0	75	0.89
30674393--30674449	27	2.1	27	93	0	96	14	28	15	42	1.86
30675347--30675381	18	2.0	18	94	5	63	57	0	14	28	1.38
30684031--30684141	43	2.6	43	88	1	159	26	17	24	32	1.96
30686582--30686615	17	2.1	17	88	5	52	50	11	8	29	1.69
30687589--30687613	4	6.2	4	100	0	50	24	0	0	76	0.80
30689505--30689529	13	1.9	13	100	0	50	0	12	0	88	0.53
30690229--30690267	17	2.4	16	84	16	53	56	0	12	30	1.37
30691655--30691701	13	3.8	12	84	15	60	72	10	0	17	1.12
30693255--30693303	25	1.9	26	95	4	91	32	12	10	44	1.75
30696921--30696957	13	3.1	13	77	22	53	59	0	32	8	1.27
30696940--30697027	39	2.3	39	84	7	108	68	2	25	4	1.20
30698644--30698679	18	2.0	18	88	0	54	66	22	11	0	1.22
30699655--30699699	15	2.8	16	86	6	56	6	13	0	80	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30699660--30699699	16	2.5	16	83	0	53	7	12	0	80	0.91
30699859--30699910	11	4.5	11	76	23	54	32	5	7	53	1.53
30699866--30699908	11	3.8	11	82	17	61	34	6	9	48	1.62
30699859--30699918	23	2.6	23	89	5	95	31	6	8	53	1.57
30702670--30702809	49	3.0	49	87	9	206	40	23	5	30	1.78
30702732--30702809	41	1.9	41	94	0	138	42	23	6	28	1.78
30712039--30712073	18	1.9	18	88	0	52	17	40	25	17	1.90
30715913--30715950	17	2.3	17	90	4	60	34	0	0	65	0.93
30715923--30715961	17	2.4	17	86	4	53	35	0	2	61	1.10
30726758--30726813	14	3.5	17	72	18	57	53	3	0	42	1.18
30727373--30727678	152	2.0	152	98	0	596	43	12	10	34	1.76
30734376--30734423	25	1.9	25	83	8	62	43	10	6	39	1.64
30736189--30736257	35	1.9	35	82	8	86	34	20	11	33	1.89
30738625--30739575	480	2.0	481	98	0	1859	29	19	18	33	1.95
30751820--30751855	5	7.2	5	100	0	72	38	0	0	61	0.96
30753157--30753196	16	2.5	16	100	0	80	25	5	5	65	1.34
30774826--30774850	12	2.1	12	100	0	50	52	0	16	32	1.44
30779560--30779639	32	2.5	31	78	11	83	27	30	17	25	1.97
30780874--30781146	51	5.4	51	91	1	424	30	24	14	30	1.94
30780874--30781146	101	2.7	102	90	1	424	30	24	14	30	1.94
30781220--30781252	17	1.9	17	88	11	50	45	21	0	33	1.52
30783782--30783819	14	2.5	16	87	8	53	63	2	7	26	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30789296--30789751	47	9.6	47	94	1	759	29	29	8	32	1.86
30789296--30789751	239	1.9	237	94	0	804	29	29	8	32	1.86
30791890--30792068	85	2.1	85	98	0	349	26	27	8	37	1.85
30793557--30793634	32	2.5	31	87	6	111	25	28	21	24	1.99
30795948--30796145	99	2.0	99	94	0	351	31	12	20	35	1.90
30806508--30806569	24	2.6	24	86	0	88	33	22	3	40	1.70
30825710--30825745	17	2.1	18	89	5	56	8	22	5	63	1.43
30830289--30830335	24	1.9	25	86	4	69	36	0	38	25	1.56
30831005--30831334	27	12.2	27	82	0	363	43	20	16	20	1.89
30842965--30843006	22	1.9	22	90	0	66	35	0	2	61	1.09
30855520--30855563	18	2.4	18	85	11	54	9	18	2	70	1.24
30855531--30855586	27	2.1	27	86	3	78	7	17	1	73	1.15
30857517--30857554	20	1.9	20	100	0	76	21	21	13	44	1.85
30857752--30857785	9	3.7	9	84	7	50	52	11	2	32	1.53
30857752--30857788	19	1.9	19	94	0	65	51	10	5	32	1.60
30857744--30857867	54	2.3	54	90	0	194	45	12	8	33	1.74
30857806--30857844	19	2.1	19	90	0	60	51	12	7	28	1.67
30857943--30857982	20	2.0	21	85	5	55	35	15	17	32	1.91
30860653--30860757	28	3.8	28	85	2	131	23	28	11	36	1.90
30860680--30860788	28	3.9	29	78	9	109	22	29	12	34	1.92
30860653--30860782	56	2.3	55	80	10	147	22	28	13	36	1.91
30869221--30869275	25	2.2	25	90	3	85	29	18	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30873106--30873153	23	2.1	23	84	0	60	39	35	8	16	1.79
30882315--30882364	17	2.8	18	84	6	66	28	20	8	44	1.79
30889119--30889154	17	2.1	17	89	0	54	72	0	5	22	1.05
30890638--30890671	16	2.1	16	100	0	68	47	0	0	52	1.00
30892075--30892108	4	8.0	4	90	9	50	23	0	2	73	0.97
30892058--30892117	22	2.7	22	73	19	61	26	0	6	66	1.16
30895853--30895962	54	2.0	54	91	3	177	26	10	25	38	1.87
30910992--30911051	3	20.0	3	100	0	120	33	0	0	66	0.92
30918705--30918744	16	2.5	16	91	0	62	47	2	7	42	1.45
30918747--30918866	59	2.1	59	90	1	197	41	5	9	44	1.58
30918932--30918977	24	1.9	24	91	8	76	60	2	0	36	1.09
30919564--30919589	11	2.4	11	100	0	52	65	0	0	34	0.93
30919703--30919755	21	2.6	21	96	3	99	66	13	3	16	1.39
30919702--30919758	11	5.6	10	82	10	71	68	12	3	15	1.34
30919849--30919904	10	5.8	10	78	19	57	75	5	3	16	1.13
30920053--30920099	23	2.0	23	84	12	60	17	14	0	68	1.22
30920060--30920109	23	2.1	24	82	10	59	16	14	0	70	1.18
30924713--30924756	16	2.8	15	83	10	52	31	4	2	61	1.28
30926923--30926980	30	1.9	30	89	0	89	13	27	36	22	1.92
30927586--30927641	3	19.3	3	85	7	80	71	0	28	0	0.86
30931985--30932134	75	2.0	75	98	0	291	38	7	22	32	1.82
30935123--30935178	28	2.0	28	92	0	94	23	8	3	64	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30936439--30936808	46	8.1	46	75	9	245	32	3	23	40	1.72
30936472--30936797	23	14.2	23	72	10	229	31	3	23	40	1.71
30936381--30936808	229	1.9	230	85	0	606	31	3	23	41	1.71
30940740--30940876	58	2.4	57	85	7	179	44	0	2	51	1.21
30960659--30960952	42	7.0	42	86	5	380	30	19	23	26	1.98
30960659--30960950	127	2.3	127	87	5	396	30	19	23	26	1.98
30960659--30960952	85	3.5	83	86	4	378	30	19	23	26	1.98
30961387--30961446	12	5.2	12	78	11	72	1	40	20	38	1.62
30961384--30961479	21	4.4	21	80	7	93	2	41	18	37	1.63
30966919--30967285	25	14.4	25	75	7	207	29	2	20	47	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175