genome.fa.s16.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  118  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37174134--37174170	3	12.3	3	100	0	74	32	0	0	67	0.91
37174803--37174939	54	2.5	54	83	7	161	33	14	22	29	1.94
37184921--37184963	19	2.3	19	83	0	59	65	2	2	30	1.18
37187879--37187921	21	2.1	20	95	4	77	34	9	9	46	1.68
37188350--37188424	40	1.9	39	94	5	134	26	12	8	53	1.65
37188512--37188681	56	3.1	55	86	11	226	35	14	11	38	1.82
37188659--37188724	24	2.8	24	71	11	64	40	0	1	57	1.08
37189045--37189093	18	2.7	18	100	0	98	20	42	8	28	1.80
37189038--37189118	18	4.5	19	80	7	62	16	40	4	38	1.70
37193073--37193768	132	5.3	132	86	4	946	28	20	25	25	1.99
37193574--37193765	44	4.4	44	68	7	129	27	19	28	24	1.98
37193073--37193788	254	2.8	256	89	3	1044	28	20	25	25	1.99
37194407--37194436	16	1.9	15	93	6	51	23	10	0	66	1.21
37196398--37196436	16	2.4	16	95	0	69	38	0	2	58	1.12
37197448--37197583	53	2.6	53	87	0	200	19	19	29	31	1.96
37198592--37198650	28	2.1	28	96	0	109	27	16	22	33	1.95
37205150--37205237	42	2.1	42	100	0	176	37	9	12	40	1.75
37211706--37211771	21	3.2	21	79	10	66	39	0	1	59	1.07
37211694--37211790	29	3.4	28	75	13	74	38	0	2	59	1.09
37211750--37211791	19	2.2	19	86	4	57	42	0	2	54	1.13
37211761--37211799	19	2.0	19	85	5	51	38	2	7	51	1.44
37214781--37214890	57	1.9	57	87	3	159	16	36	25	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37217772--37217868	48	2.0	48	100	0	194	27	14	18	39	1.90
37217847--37218820	69	14.2	69	79	1	851	19	20	19	40	1.91
37232215--37232267	27	2.0	27	96	3	99	28	33	22	15	1.94
37232140--37232343	102	2.0	101	88	0	300	31	28	20	19	1.97
37232247--37232382	42	3.5	40	73	17	142	32	27	19	20	1.97
37232288--37232415	33	3.6	33	76	17	139	32	27	21	17	1.96
37232109--37232447	177	1.9	177	92	0	570	31	28	20	20	1.97
37232241--37232419	75	2.4	75	94	0	304	31	27	20	20	1.97
37239481--37239682	102	2.0	102	96	0	368	30	28	21	19	1.98
37239585--37239721	42	3.5	42	77	17	175	31	27	18	21	1.97
37239446--37239786	177	1.9	177	95	0	610	30	28	20	20	1.98
37239583--37239758	75	2.3	75	96	0	316	31	27	19	21	1.97
37269426--37269483	30	2.0	29	83	10	73	18	8	8	63	1.48
37270106--37270157	20	2.5	21	84	9	54	5	28	0	65	1.16
37270098--37270155	16	3.8	16	78	15	61	5	29	0	65	1.14
37270112--37270157	20	2.2	22	88	7	69	6	28	0	65	1.17
37270170--37270201	8	4.0	8	91	0	55	59	0	0	40	0.97
37270167--37270202	16	2.3	16	95	4	65	58	0	0	41	0.98
37270174--37270209	16	2.2	16	90	0	54	61	2	0	36	1.11
37273763--37273837	30	2.5	30	83	8	91	34	2	1	61	1.18
37273774--37273830	23	2.6	22	81	15	73	31	1	1	64	1.13
37275638--37275851	107	2.0	109	93	1	369	34	11	9	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37277811--37277868	29	2.0	29	86	6	82	67	1	3	27	1.17
37280639--37280736	19	5.1	19	91	7	153	37	9	16	36	1.80
37280639--37280759	19	5.9	22	81	14	86	36	8	17	38	1.80
37281225--37281287	33	1.9	33	90	6	101	23	1	3	71	1.09
37281226--37281312	40	2.1	42	81	12	99	24	2	2	71	1.09
37287155--37288047	132	6.8	132	90	1	1188	28	15	25	30	1.96
37287155--37288045	220	4.1	220	78	5	820	28	15	25	30	1.96
37288340--37288455	44	2.7	44	81	4	128	28	20	21	29	1.98
37288340--37288591	128	2.0	129	81	3	303	29	20	21	28	1.98
37288875--37288928	19	2.8	19	97	0	99	37	9	16	37	1.81
37289454--37289525	23	3.1	23	78	4	65	22	4	1	72	1.10
37289473--37289529	21	2.8	19	77	12	60	22	3	1	71	1.10
37289586--37289622	6	6.2	6	96	0	65	29	0	0	70	0.88
37289563--37289662	22	4.3	23	75	11	71	31	2	4	63	1.24
37289580--37289661	12	7.1	12	72	14	57	31	2	2	63	1.20
37294760--37294831	20	3.4	22	70	20	64	38	0	4	56	1.18
37297417--37297455	14	2.7	15	84	8	53	53	0	17	28	1.44
37297512--37297583	28	2.6	28	90	0	108	31	12	26	29	1.93
37297512--37297592	28	3.0	24	76	16	63	33	12	23	30	1.92
37298304--37298660	70	5.1	70	90	1	480	26	12	17	43	1.85
37298328--37298701	140	2.6	142	87	3	515	27	12	17	42	1.85
37298313--37298636	23	13.9	22	71	12	191	26	12	17	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37298313--37298703	23	16.7	23	70	11	177	26	12	17	42	1.85
37299191--37299504	27	11.5	26	82	6	349	44	20	16	19	1.87
37299190--37299504	55	5.8	55	85	2	375	44	20	16	19	1.86
37299191--37299505	82	3.9	82	83	4	368	44	20	16	19	1.87
37303464--37303515	21	2.4	22	83	3	61	36	19	7	36	1.80
37323173--37323357	40	4.7	40	82	6	216	25	28	22	24	1.99
37323173--37323357	79	2.3	82	82	7	220	25	28	22	24	1.99
37325769--37325806	9	4.3	9	93	6	69	39	0	21	39	1.53
37325769--37325806	17	2.2	18	95	4	69	39	0	21	39	1.53
37335245--37335304	17	3.1	21	68	22	67	50	15	18	16	1.79
37336664--37336771	20	5.4	20	75	4	101	35	21	31	12	1.90
37336668--37336784	20	5.8	20	70	16	73	35	19	29	14	1.92
37338325--37338360	18	1.9	19	94	5	65	44	11	22	22	1.84
37339415--37339461	24	1.9	24	86	4	67	36	0	38	25	1.56
37340577--37340857	27	10.4	27	87	1	366	43	20	16	19	1.88
37340577--37340856	81	3.5	80	88	2	409	43	20	16	19	1.88
37342981--37343102	39	3.1	39	96	3	217	37	4	13	44	1.65
37347151--37347626	44	11.0	44	83	4	583	25	26	17	30	1.97
37365024--37365064	20	2.0	20	100	0	82	41	4	14	39	1.67
37371395--37371453	28	2.1	28	87	0	82	30	20	25	23	1.98
37371660--37371926	32	8.4	32	78	4	218	36	22	21	19	1.95
37371680--37371926	96	2.6	96	85	3	311	36	22	21	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37371970--37372033	27	2.4	27	85	12	80	31	23	25	20	1.98
37372098--37372156	24	2.5	23	83	8	82	47	25	6	20	1.74
37372126--37372192	33	2.0	33	100	0	134	49	23	5	20	1.71
37372253--37372390	27	5.1	27	92	1	206	23	20	21	35	1.96
37377825--37377853	6	4.8	6	100	0	58	17	17	31	34	1.93
37380559--37380588	15	2.0	15	93	0	51	23	13	10	53	1.69
37380736--37380787	26	2.0	27	85	14	74	7	9	5	76	1.14
37388291--37388492	42	4.8	42	79	6	212	46	15	20	17	1.84
37388291--37388491	84	2.4	84	89	2	298	46	15	20	17	1.84
37388296--37388494	21	9.4	21	73	11	147	46	16	20	16	1.84
37391446--37391480	16	2.1	17	89	5	54	37	25	0	37	1.57
37395321--37395362	21	2.0	21	85	0	57	40	19	2	38	1.64
37396346--37396480	68	2.0	68	89	2	209	27	18	24	29	1.98
37403023--37403089	24	2.7	25	75	13	75	19	25	17	37	1.94
37408450--37408523	32	2.3	32	92	0	121	44	6	13	35	1.70
37409152--37409182	14	2.2	14	94	0	53	38	19	19	22	1.93
37426228--37426285	29	2.0	29	96	0	107	32	17	22	27	1.96
37426683--37426756	32	2.3	32	86	4	96	22	14	35	27	1.94
37433656--37433688	7	5.0	7	92	7	52	69	0	0	30	0.88
37433652--37433684	14	2.3	15	85	15	52	72	0	0	27	0.85
37434131--37434226	19	4.7	21	82	10	74	40	16	5	37	1.71
37434167--37434239	19	3.8	19	96	0	137	36	16	9	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37434665--37435215	44	12.6	44	71	11	244	25	21	21	31	1.98
37435014--37435301	84	3.4	83	71	13	278	27	21	20	29	1.98
37434930--37435347	173	2.4	173	85	2	500	27	22	20	30	1.98
37434658--37435215	217	2.6	218	82	3	676	26	21	20	31	1.98
37434793--37435344	217	2.5	217	80	4	517	27	22	20	30	1.98
37434794--37435343	44	12.7	44	68	12	216	27	22	20	30	1.98
37435332--37435427	44	2.2	44	83	3	113	30	21	19	28	1.98
37435440--37435918	88	5.4	88	91	0	733	21	23	27	27	1.99
37435506--37435913	44	9.3	44	63	6	144	21	24	28	26	1.99
37437138--37437166	2	14.5	2	100	0	58	0	48	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175