genome.fa.s16.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  84  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26433982--26434019	19	2.0	20	94	5	69	18	34	10	36	1.85
26452319--26452357	16	2.4	16	95	0	69	7	28	2	61	1.37
26453576--26453605	12	2.5	12	94	0	51	23	10	0	66	1.21
26458295--26458344	18	2.6	19	87	9	66	4	20	2	74	1.08
26458301--26458344	19	2.4	17	82	14	52	4	18	2	75	1.09
26460811--26460860	26	1.9	26	83	0	64	18	4	8	70	1.28
26464768--26464792	12	2.1	12	100	0	50	44	16	8	32	1.76
26465829--26465891	23	2.7	24	90	2	92	25	6	31	36	1.81
26476649--26476694	22	2.1	22	100	0	92	41	17	4	36	1.69
26478143--26478185	22	2.0	21	86	4	59	58	6	13	20	1.59
26484437--26484480	16	2.8	16	82	3	54	77	2	4	15	1.04
26485446--26485664	38	5.8	38	86	2	278	17	20	25	36	1.94
26489306--26489354	20	2.5	20	83	9	64	24	12	14	48	1.77
26491198--26491248	23	2.2	23	92	0	84	41	17	9	31	1.82
26506523--26506571	20	2.5	20	83	9	64	24	10	16	48	1.76
26511898--26511941	9	5.1	9	89	10	74	31	0	11	56	1.35
26511895--26511932	16	2.4	16	95	0	67	34	0	10	55	1.34
26513871--26513915	24	1.9	23	90	4	72	62	2	0	35	1.08
26520603--26520787	79	2.3	81	81	7	209	24	23	27	24	2.00
26520604--26520787	40	4.6	39	79	9	185	25	23	27	23	2.00
26520650--26520818	79	2.1	79	79	8	184	27	22	25	24	2.00
26522143--26522327	79	2.3	81	81	7	209	24	23	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26522144--26522327	40	4.6	39	79	9	185	25	23	27	23	2.00
26522190--26522358	79	2.1	79	79	8	184	27	22	25	24	2.00
26530109--26530293	79	2.3	81	82	7	218	24	23	27	24	2.00
26530110--26530293	40	4.6	39	80	9	194	25	23	27	23	2.00
26532938--26532995	16	3.8	15	77	11	64	77	1	20	0	0.86
26532938--26532984	6	7.8	6	81	9	60	78	2	19	0	0.85
26538686--26538880	50	3.9	50	75	4	178	24	16	27	31	1.96
26538690--26538873	101	1.8	101	84	4	255	24	16	27	32	1.96
26546491--26546534	13	3.3	13	83	3	52	79	2	15	2	0.93
26546551--26546596	23	2.0	24	86	4	67	67	2	21	8	1.29
26546500--26546597	46	2.1	45	80	12	110	68	2	20	9	1.27
26562328--26562792	232	2.0	233	97	0	878	25	15	20	38	1.92
26565873--26565921	20	2.5	20	82	0	71	26	14	32	26	1.94
26567552--26567600	6	8.0	6	78	13	55	77	0	18	4	0.92
26574337--26574384	25	1.9	25	91	8	80	20	22	12	43	1.86
26589176--26589223	21	2.5	19	86	10	62	4	16	6	72	1.20
26589923--26589962	15	2.7	15	96	0	71	65	17	10	7	1.46
26596330--26596404	33	2.2	34	90	2	116	44	12	6	37	1.68
26598173--26598207	17	2.1	17	89	10	54	5	20	2	71	1.19
26606562--26606608	24	2.0	24	91	0	76	27	8	36	27	1.86
26608248--26608311	20	3.2	21	84	4	62	21	25	17	35	1.95
26619776--26619830	15	3.8	14	80	7	65	74	1	21	1	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26629555--26629597	22	2.0	21	95	4	77	13	20	13	51	1.76
26631316--26631503	49	3.7	50	81	5	198	23	28	21	26	1.99
26636929--26637052	50	2.5	49	81	2	131	26	22	29	21	1.99
26636942--26637115	50	3.5	50	75	5	140	26	21	29	22	1.99
26641924--26642312	40	9.8	40	78	9	395	33	17	30	17	1.93
26641927--26642304	20	19.0	20	65	15	160	34	17	30	17	1.93
26641924--26642337	79	5.2	79	87	2	580	34	17	30	18	1.94
26644957--26645116	33	4.8	33	67	7	101	47	16	21	15	1.82
26644959--26645116	66	2.4	66	74	7	158	47	16	20	15	1.82
26648951--26648986	13	2.8	13	95	0	63	61	11	5	22	1.50
26652678--26652737	31	1.9	32	86	6	88	40	30	18	11	1.86
26661036--26661648	84	7.3	84	91	2	941	36	25	15	22	1.94
26665550--26665829	41	6.7	40	82	8	326	34	25	17	22	1.96
26665550--26665788	84	2.8	84	98	0	451	35	25	17	20	1.95
26674042--26674099	21	2.8	21	84	5	73	43	34	12	10	1.76
26684919--26684959	18	2.3	18	88	12	59	36	0	19	43	1.51
26685183--26685258	23	3.3	23	92	0	125	22	22	26	28	1.99
26690870--26690902	14	2.5	14	90	9	52	24	9	27	39	1.85
26690817--26690952	50	2.7	50	84	5	168	26	14	27	30	1.95
26692439--26692486	11	4.4	11	94	0	78	29	39	8	22	1.83
26695834--26695879	22	2.1	21	84	4	56	47	13	4	34	1.62
26703775--26703869	44	2.2	44	94	0	163	42	12	21	24	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26703890--26704119	50	4.7	49	82	5	263	27	20	32	19	1.97
26719836--26719874	15	2.7	14	84	7	51	74	0	25	0	0.82
26720722--26720772	8	6.6	8	78	17	54	72	0	11	15	1.12
26720721--26720772	16	3.3	16	84	13	72	73	0	11	15	1.11
26720724--26720783	22	2.7	22	82	12	77	70	0	13	16	1.18
26720722--26720783	30	2.1	30	84	6	81	70	0	12	16	1.16
26722026--26722467	129	3.4	129	92	0	722	30	19	24	25	1.98
26722507--26723353	44	19.6	43	69	13	334	26	18	26	28	1.98
26722509--26723185	129	5.2	129	74	12	578	25	18	26	29	1.98
26722459--26722877	218	1.9	218	93	1	716	26	18	26	28	1.98
26722774--26723058	85	3.4	85	70	9	283	26	18	26	28	1.98
26722464--26722924	218	2.1	218	89	4	707	26	18	26	28	1.98
26722900--26723223	129	2.5	129	87	4	381	26	18	25	29	1.98
26722900--26723265	129	2.9	128	84	5	323	26	19	25	28	1.98
26723026--26723493	217	2.2	213	91	3	742	27	19	25	27	1.98
26723867--26723916	26	1.9	26	91	0	82	44	38	4	14	1.63
26726873--26726909	17	2.2	18	90	9	60	35	18	2	43	1.65
26727323--26727395	36	2.0	36	100	0	146	38	16	19	26	1.92
26729592--26729640	21	2.3	21	100	0	98	12	14	26	46	1.79
26732018--26732054	18	2.0	19	89	5	58	51	0	40	8	1.32
26735444--26735486	22	2.0	22	90	0	68	58	4	11	25	1.52
26735999--26736172	87	2.0	87	100	0	348	42	10	4	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26739461--26739646	50	3.7	50	77	3	171	23	25	22	29	1.99
26745966--26746134	39	4.3	40	83	4	173	25	20	28	25	1.99
26745966--26746134	79	2.1	79	81	4	198	25	20	28	25	1.99
26745991--26746167	79	2.3	79	80	3	187	25	22	28	24	1.99
26750184--26750321	50	2.8	50	79	0	132	22	29	21	26	1.99
26757321--26757352	13	2.5	13	95	5	57	78	3	6	12	1.06
26759438--26759488	15	3.5	15	83	5	68	72	1	21	3	1.11
26768255--26768422	7	23.7	7	72	12	67	38	38	0	22	1.59
26768727--26768767	21	2.0	21	90	0	64	26	43	2	26	1.67
26768737--26768788	14	3.7	13	80	14	50	36	36	0	26	1.57
26768758--26768839	21	3.9	21	70	10	60	40	34	0	25	1.56
26768790--26768831	14	2.9	14	89	6	66	35	38	0	26	1.57
26768786--26768832	15	3.3	15	88	8	71	40	34	0	25	1.56
26768611--26769194	295	2.0	295	87	5	851	42	25	2	30	1.68
26769048--26769084	8	5.0	7	93	6	56	40	32	0	27	1.57
26769008--26769100	21	4.3	23	75	14	81	36	35	1	26	1.64
26769095--26769129	15	2.4	14	86	9	52	40	37	0	22	1.55
26769336--26769390	25	2.2	25	75	12	60	21	9	7	61	1.50
26769475--26769720	41	6.0	41	87	2	273	30	28	19	21	1.97
26769487--26769883	123	3.4	119	77	11	381	33	28	16	21	1.95
26769696--26769746	26	2.0	26	84	0	66	43	39	9	7	1.67
26769721--26769883	41	4.0	41	76	10	163	35	27	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26769733--26769882	81	1.9	81	84	2	203	35	26	15	22	1.94
26769531--26769904	189	2.0	190	83	0	471	34	28	16	20	1.94
26769721--26769904	41	4.5	41	78	4	138	36	29	14	20	1.91
26793612--26793651	3	13.3	3	83	0	53	7	27	0	65	1.20
26808355--26808474	40	3.0	40	83	1	152	22	30	15	32	1.94
26809529--26809600	28	2.5	29	90	2	119	33	9	9	47	1.69
26814250--26814322	29	2.5	29	97	0	137	32	9	12	45	1.74
26821626--26821657	15	2.1	16	94	5	57	6	21	0	71	1.07
26822650--26822698	13	3.8	13	100	0	98	22	6	0	71	1.08
26832153--26832191	18	2.2	18	85	0	51	61	2	23	12	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175