genome.fa.s16.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  95  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30448277--30448321	15	2.9	15	80	6	54	62	0	2	35	1.08
30449827--30449910	17	4.9	17	71	0	60	26	10	17	45	1.81
30449837--30449935	51	1.9	51	83	0	126	29	8	17	45	1.77
30452767--30452815	22	2.2	22	100	0	98	32	0	14	53	1.41
30455165--30455230	27	2.5	27	83	13	77	27	6	1	65	1.25
30457165--30457201	19	2.0	20	89	10	60	5	21	0	72	1.04
30457710--30457748	12	3.2	12	88	0	60	15	12	38	33	1.85
30457743--30457888	63	2.3	63	83	2	186	29	21	22	26	1.99
30461146--30461190	13	3.5	13	82	11	65	42	11	15	31	1.82
30461146--30461195	26	1.9	26	95	0	91	42	12	16	30	1.84
30461146--30461201	26	2.2	26	90	0	85	41	14	16	28	1.87
30461669--30461788	57	2.1	57	93	0	204	24	18	25	32	1.97
30461669--30461849	57	3.3	57	82	3	174	22	17	24	35	1.95
30461823--30461964	53	2.6	55	78	6	155	33	19	21	26	1.97
30464109--30464252	37	3.9	37	72	13	109	32	9	8	50	1.64
30465978--30466015	19	2.0	19	90	10	60	28	5	0	65	1.14
30469453--30469844	130	3.0	130	89	2	579	26	22	20	30	1.98
30469453--30469892	130	3.4	130	85	4	555	25	23	20	30	1.99
30469952--30470079	45	2.9	43	74	14	125	22	21	25	31	1.98
30469837--30470206	177	2.1	177	80	0	427	24	25	22	28	2.00
30469824--30470243	88	4.8	88	79	1	410	24	24	23	28	2.00
30470185--30470300	57	2.0	57	88	0	169	18	27	25	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30470091--30470388	145	2.1	145	87	2	429	20	26	26	26	1.99
30470236--30470426	88	2.2	88	89	1	285	20	24	27	27	1.99
30476968--30476997	8	3.9	8	95	4	53	63	0	0	36	0.95
30480650--30480714	22	3.0	23	74	19	66	44	13	4	36	1.65
30482084--30482157	29	2.6	29	82	4	89	59	0	2	37	1.12
30482471--30482510	18	2.3	18	91	4	64	35	2	0	62	1.09
30482539--30482594	20	2.9	18	82	12	60	28	0	1	69	0.98
30482539--30482595	19	2.9	20	82	10	64	28	0	1	70	0.98
30482518--30482584	28	2.4	28	90	7	100	32	0	1	65	1.02
30499169--30499216	25	1.9	25	95	0	87	31	16	27	25	1.97
30499575--30499618	17	2.6	17	96	0	79	20	15	18	45	1.85
30502836--30502874	14	2.7	15	84	8	62	71	2	0	25	0.98
30504509--30504688	50	3.6	50	82	3	209	27	20	30	22	1.98
30508509--30508559	26	2.0	26	96	0	93	9	33	9	47	1.70
30509350--30509407	30	1.9	30	100	0	116	34	20	10	34	1.87
30511413--30511445	17	1.9	17	100	0	66	63	0	0	36	0.95
30511651--30511682	16	2.0	16	100	0	64	37	0	0	62	0.95
30513925--30513975	18	2.7	19	81	9	59	1	17	1	78	0.94
30516357--30516443	33	2.6	33	83	0	111	28	11	18	41	1.85
30519186--30519298	44	2.6	45	81	5	133	30	21	17	30	1.96
30519314--30519580	88	3.0	87	67	14	224	25	25	21	27	2.00
30519402--30520613	44	28.2	44	75	13	429	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30519305--30519688	176	2.2	175	90	5	596	26	24	20	28	1.99
30519592--30520627	132	8.1	131	77	10	735	30	25	17	26	1.98
30519613--30520626	88	11.9	88	77	10	946	29	26	17	26	1.98
30519833--30519901	34	2.0	35	91	2	113	27	24	23	24	2.00
30520126--30520627	166	2.9	167	86	5	592	31	26	16	25	1.96
30520345--30520409	34	1.9	34	87	0	94	30	23	23	23	1.99
30519618--30520629	254	4.0	254	81	4	1166	29	26	17	25	1.98
30521908--30521946	11	3.6	11	79	6	53	0	0	20	79	0.73
30527080--30527123	23	2.0	22	90	4	70	56	2	6	34	1.38
30527841--30527896	21	2.8	19	82	10	76	35	17	8	37	1.82
30527852--30527895	21	2.1	21	100	0	88	38	13	9	38	1.77
30528575--30528860	88	3.2	89	70	7	251	25	26	17	30	1.97
30528540--30528960	176	2.4	176	85	5	557	27	24	18	29	1.98
30528509--30528784	132	2.1	130	79	7	315	27	24	18	28	1.98
30528672--30528904	44	5.3	44	73	9	170	26	25	16	31	1.96
30528895--30529010	44	2.6	44	83	2	144	32	22	19	25	1.97
30528773--30529290	254	2.0	254	89	1	797	28	22	19	28	1.98
30529137--30532534	44	79.7	43	69	13	661	28	24	18	27	1.98
30529229--30529327	34	2.9	34	92	0	171	29	24	23	23	1.99
30528883--30529826	420	2.2	423	86	5	1263	28	25	19	27	1.98
30529649--30529713	34	1.9	34	96	0	121	29	26	23	21	1.99
30529600--30529842	78	3.0	81	83	7	294	27	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30529203--30530140	386	2.5	385	90	2	1419	28	25	19	27	1.98
30529645--30530440	298	2.7	288	81	9	923	28	25	18	28	1.98
30529414--30530764	684	2.0	684	91	0	2202	28	25	18	28	1.98
30529194--30530664	386	3.8	383	81	6	1116	28	25	18	27	1.98
30530207--30534133	132	30.5	131	64	13	499	28	24	18	28	1.98
30530333--30530397	34	1.9	34	90	6	105	32	26	20	21	1.97
30529771--30530528	298	2.5	298	84	2	781	28	25	18	28	1.98
30529926--30531363	640	2.2	640	84	3	1727	28	24	18	28	1.98
30530367--30531034	254	2.6	249	82	5	621	28	23	18	28	1.98
30530903--30531125	122	1.8	122	87	1	331	30	23	19	26	1.98
30530499--30531122	254	2.5	254	82	4	591	28	23	19	28	1.98
30529557--30533745	684	6.1	681	82	6	3282	28	24	18	28	1.98
30530113--30531420	640	2.0	640	88	1	1949	28	24	18	28	1.98
30530665--30531464	386	2.1	376	84	4	1034	29	23	18	28	1.98
30531095--30531762	298	2.2	298	87	1	964	28	24	18	28	1.98
30530113--30531806	640	2.6	639	83	4	1839	28	24	18	28	1.98
30530856--30532148	386	3.4	384	79	6	935	29	23	18	28	1.98
30531657--30531721	34	1.9	34	93	0	112	29	27	21	21	1.99
30531589--30531809	122	1.8	122	89	0	352	31	24	19	25	1.98
30531613--30531850	78	2.9	81	84	7	286	30	26	18	25	1.98
30531095--30531852	298	2.5	297	83	3	758	28	24	18	28	1.98
30531632--30532446	298	2.7	292	78	10	889	29	24	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30531412--30532148	386	1.9	386	88	1	1057	29	24	18	27	1.98
30531999--30532830	386	2.2	383	86	4	1157	29	24	18	27	1.98
30532341--30532405	34	1.9	34	90	0	103	27	23	26	23	2.00
30532292--30532532	78	2.9	82	84	9	312	29	27	18	25	1.98
30532261--30532488	122	1.9	122	90	3	370	28	26	20	24	1.99
30531787--30532522	298	2.5	297	84	3	800	28	24	19	27	1.98
30532317--30532971	298	2.2	287	78	10	724	29	23	17	29	1.97
30532660--30532762	44	2.3	44	88	4	154	37	22	16	23	1.93
30532463--30533016	298	1.9	298	88	2	853	29	23	17	29	1.97
30532681--30533249	254	2.2	254	85	1	782	29	23	16	29	1.97
30532981--30533045	34	1.9	34	93	0	112	29	27	23	20	1.98
30532419--30533086	298	2.2	297	78	7	812	29	23	17	29	1.97
30533165--30534133	44	22.3	44	68	14	191	28	23	18	28	1.98
30533015--30533422	176	2.3	176	88	2	588	28	23	17	30	1.97
30533359--30534131	44	17.8	44	71	10	290	28	24	18	28	1.98
30533015--30533965	220	4.3	220	77	6	1000	28	23	18	29	1.98
30533649--30534131	88	5.6	86	70	12	339	28	24	19	27	1.99
30533889--30534131	78	3.0	81	83	8	305	28	26	18	25	1.98
30533868--30534090	122	1.8	122	92	1	376	30	25	20	24	1.99
30535308--30535336	15	1.9	15	100	0	58	27	27	13	31	1.94
30540939--30540971	8	4.1	8	96	0	57	42	24	0	33	1.55
30554979--30555009	16	1.9	16	93	0	53	32	22	16	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30581057--30581266	28	7.5	28	97	0	377	25	11	28	33	1.91
30581032--30581266	84	2.8	84	92	1	382	25	11	28	34	1.91
30586187--30586355	37	4.6	37	84	0	203	28	16	19	35	1.94
30589338--30589629	50	5.9	50	85	4	342	27	22	28	21	1.99
30591459--30591503	22	2.0	22	82	0	54	64	8	6	20	1.44
30592926--30592968	18	2.5	17	85	10	61	27	2	4	65	1.25
30593190--30593232	21	2.1	20	83	12	52	13	6	4	74	1.19
30593349--30593383	15	2.3	15	95	0	61	22	0	11	65	1.24
30605251--30606104	44	19.7	43	70	14	332	30	20	21	27	1.98
30605244--30606236	217	4.6	217	91	0	1572	30	20	21	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175