genome.fa.s16.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  155  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46766449--46766582	21	6.4	21	88	0	151	34	16	43	5	1.72
46766745--46766798	9	6.2	9	75	14	51	27	0	3	68	1.06
46767201--46767242	22	1.9	22	95	0	75	40	28	21	9	1.84
46778570--46778618	9	5.4	9	80	0	53	28	2	8	61	1.36
46778828--46778873	16	2.7	17	77	9	58	39	2	0	58	1.10
46778828--46778874	18	2.7	18	80	6	62	40	2	0	57	1.11
46778847--46778899	20	2.7	19	85	11	63	43	9	0	47	1.36
46778911--46778946	18	2.0	18	88	0	54	41	5	5	47	1.50
46782245--46782288	22	2.0	22	91	4	72	40	0	6	52	1.28
46783702--46783783	31	2.7	30	76	9	78	43	8	9	37	1.68
46783751--46783812	31	2.1	30	84	6	81	45	8	8	38	1.63
46783749--46783815	29	2.3	27	78	14	71	43	7	8	40	1.64
46790428--46790470	21	2.0	21	90	0	68	25	23	27	23	2.00
46791638--46791730	28	3.4	27	76	17	77	44	1	0	54	1.07
46791618--46791728	29	4.0	27	74	15	84	44	2	0	53	1.15
46794918--46794956	18	2.2	18	90	0	60	20	5	10	64	1.44
46795204--46795344	73	1.9	73	80	11	164	17	19	21	41	1.90
46796650--46796688	19	2.1	19	90	0	60	20	5	10	64	1.44
46801689--46801728	19	2.1	19	90	0	62	20	5	10	65	1.42
46806320--46806358	18	2.2	18	90	0	60	20	5	10	64	1.44
46808046--46808085	19	2.1	19	90	0	62	20	5	10	65	1.42
46821300--46821339	21	1.9	21	94	0	71	47	5	10	37	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46821490--46821575	25	3.3	27	63	21	74	18	17	10	53	1.71
46823672--46823759	43	2.0	43	100	0	176	44	9	6	39	1.63
46827032--46827117	25	3.3	27	62	15	72	19	17	10	52	1.73
46834043--46834098	29	1.9	29	85	0	76	35	14	10	39	1.81
46835648--46835676	12	2.3	13	94	5	51	62	0	0	37	0.96
46837521--46837553	15	2.2	15	94	0	57	63	12	0	24	1.28
46838097--46838151	19	2.8	21	70	13	53	65	7	1	25	1.28
46839904--46839999	45	2.1	45	84	3	122	42	18	16	21	1.89
46841182--46841238	30	1.9	29	86	10	80	49	5	0	45	1.24
46841332--46841375	16	2.6	16	79	10	52	47	6	0	45	1.29
46845950--46846006	29	2.0	29	86	6	80	43	0	3	52	1.18
46845925--46845996	37	1.9	37	83	5	92	40	0	2	56	1.13
46846446--46846495	22	2.3	22	85	0	64	80	6	4	10	1.02
46847408--46847540	38	3.4	38	80	7	135	22	20	27	29	1.98
46851110--46851159	19	2.4	21	87	12	77	40	0	0	60	0.97
46851114--46851151	18	2.1	19	90	5	60	36	0	0	63	0.95
46851576--46851650	31	2.4	31	79	0	87	37	9	9	44	1.69
46851889--46851976	41	2.2	41	97	2	169	48	11	5	34	1.63
46858433--46858528	25	3.8	24	77	10	77	35	21	26	16	1.95
46858603--46858684	24	3.4	24	70	12	60	30	21	29	18	1.97
46861358--46861409	15	3.2	15	73	19	50	44	0	1	53	1.11
46861490--46861533	22	2.0	22	86	0	61	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46862921--46862989	36	1.9	36	81	0	84	24	7	5	62	1.44
46868878--46868913	2	18.0	2	100	0	72	50	0	50	0	1.00
46870501--46870577	29	2.6	29	81	4	91	45	15	12	25	1.82
46872347--46872458	55	2.0	55	100	0	224	32	3	19	44	1.68
46883713--46883762	16	3.1	16	85	5	66	60	0	0	40	0.97
46886955--46886981	14	1.9	14	100	0	54	37	0	0	62	0.95
46887501--46887558	29	2.0	30	82	3	73	50	3	15	31	1.61
46901789--46901846	27	2.1	27	83	0	71	32	34	22	10	1.88
46902778--46902812	3	11.7	3	100	0	70	0	65	0	34	0.93
46905890--46905945	15	3.8	15	80	4	69	50	3	16	30	1.62
46905886--46905944	29	2.0	29	93	0	100	50	1	16	30	1.55
46915138--46915166	5	6.0	5	96	4	51	20	0	0	79	0.74
46927242--46927623	44	8.9	43	71	13	214	31	21	21	25	1.98
46927461--46927654	85	2.3	86	89	1	291	28	23	23	24	1.99
46929371--46929434	27	2.4	25	78	14	67	35	9	3	51	1.50
46929595--46929623	5	6.0	5	96	4	51	20	0	0	79	0.74
46933497--46933552	21	2.7	21	91	0	85	30	7	35	26	1.83
46933715--46933753	18	2.2	18	95	4	71	58	0	0	41	0.98
46933715--46933768	19	3.0	16	82	17	54	57	1	1	38	1.20
46934084--46934118	18	2.0	18	94	5	63	40	0	60	0	0.97
46938815--46938859	4	11.2	4	95	0	81	26	0	22	51	1.49
46942924--46942954	8	3.9	8	100	0	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46943014--46943076	10	5.8	10	74	17	54	71	4	19	4	1.22
46943056--46943101	12	3.5	13	80	14	51	71	0	28	0	0.86
46943052--46943101	15	3.5	15	81	13	52	72	0	28	0	0.86
46943964--46944059	40	2.5	39	76	5	97	27	17	23	31	1.97
46945951--46946047	28	3.5	28	83	4	106	31	11	26	29	1.91
46959958--46959992	18	1.9	18	88	0	52	42	0	5	51	1.25
46961100--46961139	16	2.5	16	84	11	55	20	30	2	47	1.63
46962036--46962269	50	4.7	50	83	1	265	30	22	27	20	1.98
46966545--46966732	43	4.6	43	70	15	130	55	2	0	41	1.15
46966549--46966716	26	6.8	25	67	24	83	55	2	0	41	1.17
46966667--46966707	13	3.2	12	80	12	55	58	0	0	41	0.98
46966800--46966844	16	2.8	16	80	16	56	60	0	2	37	1.09
46966815--46966852	18	2.2	17	90	4	58	63	0	2	34	1.09
46966437--46967413	122	8.1	121	95	1	1673	53	4	1	40	1.28
46966922--46966966	16	2.8	16	80	16	56	60	0	2	37	1.09
46966937--46966974	18	2.2	17	90	4	58	63	0	2	34	1.09
46967044--46967088	16	2.8	16	80	16	56	60	0	2	37	1.09
46967059--46967096	18	2.2	17	90	4	58	63	0	2	34	1.09
46967153--46967193	12	3.2	12	81	18	55	58	0	0	41	0.98
46967137--46967191	15	4.0	13	81	15	58	58	1	0	40	1.09
46967154--46967204	16	3.5	15	74	15	54	60	0	1	37	1.08
46967409--46967447	20	2.0	20	84	0	51	43	2	12	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46970604--46970637	12	2.8	12	90	0	50	64	17	8	8	1.47
46970705--46970747	17	2.6	16	79	20	52	65	0	27	6	1.18
46975379--46975438	29	2.1	29	100	0	120	41	26	6	25	1.80
46979216--46979286	27	2.5	26	80	13	70	59	2	4	33	1.31
46988797--46988832	5	7.2	5	93	0	63	77	2	0	19	0.88
46989203--46989282	24	3.4	24	78	10	85	61	0	3	35	1.14
46989209--46989282	22	3.3	22	78	10	78	60	0	4	35	1.15
46989190--46989291	26	3.8	26	75	12	82	57	1	5	34	1.34
46990725--46990831	42	2.6	41	73	10	101	31	23	18	26	1.97
46990892--46991455	50	11.4	50	66	6	261	24	24	21	29	1.99
46990842--46991438	100	6.0	100	85	3	753	25	23	21	29	1.99
46991473--46991650	88	2.0	88	87	0	257	25	25	20	28	1.99
46992907--46992968	15	4.2	15	89	10	92	12	16	0	70	1.16
46992907--46992978	8	9.7	7	84	13	83	13	16	0	69	1.19
47000444--47000479	5	7.2	5	87	0	54	75	2	2	19	1.06
47000818--47000859	22	1.9	22	90	0	66	42	0	16	40	1.48
47000854--47000965	26	4.4	26	78	10	108	56	0	5	37	1.28
47005924--47006071	79	1.9	79	80	2	172	47	11	8	33	1.69
47006918--47006960	22	2.0	21	82	13	52	32	23	2	41	1.67
47008635--47008666	16	2.0	16	93	0	55	46	0	0	53	1.00
47025624--47025676	21	2.5	21	100	0	106	30	13	15	41	1.85
47028518--47028576	31	1.9	31	96	0	109	42	11	8	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47035981--47036103	21	5.9	21	73	0	102	43	17	21	16	1.87
47035985--47036139	42	3.7	42	84	0	166	45	16	21	16	1.85
47042821--47042902	26	3.2	26	68	16	80	40	3	9	46	1.54
47044371--47044404	17	2.1	16	88	5	50	82	0	11	5	0.83
47047260--47047304	21	2.2	20	84	4	54	6	8	2	82	0.93
47047354--47047388	17	1.9	19	88	11	56	20	2	11	65	1.37
47049319--47049401	31	2.7	31	90	3	114	33	4	10	50	1.58
47050925--47050964	18	2.2	18	100	0	80	25	12	12	50	1.75
47060695--47060916	30	7.4	30	80	4	182	39	12	23	24	1.90
47060670--47060916	30	8.3	31	79	5	181	38	12	23	24	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175