genome.fa.s16.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  132  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41070523--41070548	12	2.2	12	100	0	52	23	42	0	34	1.54
41070516--41070640	53	2.4	52	90	7	202	21	41	8	28	1.81
41075357--41075394	19	2.0	20	89	5	60	68	2	0	28	1.03
41079815--41079851	9	4.1	9	92	0	65	29	10	13	45	1.77
41079905--41079935	9	3.4	9	90	0	53	38	22	12	25	1.90
41102207--41102245	12	3.2	12	85	0	51	20	23	5	51	1.67
41102445--41102630	50	3.8	49	79	6	180	22	26	22	29	1.99
41111486--41111547	24	2.6	24	94	0	106	64	0	35	0	0.94
41111511--41111550	13	3.2	13	76	23	50	67	0	32	0	0.91
41111786--41111921	40	3.4	40	81	4	150	38	21	20	19	1.93
41111951--41112149	41	4.9	41	89	0	290	25	21	22	31	1.98
41112242--41112300	26	2.3	26	82	5	75	57	3	10	28	1.48
41112651--41112767	62	1.9	62	85	7	166	29	0	23	46	1.58
41112757--41112800	20	2.2	20	88	12	63	18	0	45	36	1.49
41112757--41112824	34	2.0	34	82	0	82	25	0	39	35	1.56
41112923--41112969	14	3.4	14	74	11	51	27	0	42	29	1.56
41112922--41112976	21	2.7	20	80	8	65	29	0	41	29	1.56
41116865--41116907	9	4.8	9	77	11	52	11	13	9	65	1.48
41118716--41118921	43	4.8	43	82	4	238	25	19	25	29	1.99
41118889--41118965	33	2.3	33	100	0	154	24	23	23	28	1.99
41119252--41119980	152	4.8	152	81	11	843	51	6	11	30	1.63
41119252--41119979	304	2.4	305	90	3	1155	51	6	10	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41120646--41121171	259	2.0	259	97	0	998	28	18	22	30	1.97
41121931--41122502	77	7.4	77	94	0	1009	41	9	7	41	1.66
41125482--41125528	23	2.0	23	84	8	60	55	14	2	27	1.51
41125840--41125873	3	11.0	3	87	6	50	2	29	0	67	1.05
41126749--41126813	30	2.2	29	83	10	78	63	0	0	36	0.95
41130157--41130199	21	2.0	22	86	13	63	44	0	13	41	1.44
41130121--41130239	61	2.0	61	83	5	152	38	3	14	43	1.62
41130157--41130200	20	2.1	21	84	12	56	45	0	13	40	1.44
41130284--41130443	64	2.5	65	86	7	224	33	7	17	41	1.78
41130563--41130669	41	2.6	41	90	0	160	21	18	22	37	1.94
41137728--41137771	22	2.0	22	90	0	70	45	13	4	36	1.64
41154780--41154923	27	5.3	27	84	5	159	40	20	18	19	1.91
41154780--41154923	54	2.7	54	82	6	193	40	20	18	19	1.91
41155074--41155131	26	2.2	26	81	3	62	25	22	13	37	1.91
41155082--41155160	26	3.0	26	79	1	86	25	21	15	37	1.92
41155092--41155163	26	2.8	26	80	0	90	23	22	16	37	1.94
41155269--41155328	28	2.1	29	90	3	95	25	23	23	28	2.00
41157132--41157205	26	2.8	27	85	6	98	43	10	17	28	1.83
41158842--41158887	21	2.3	20	82	10	58	30	13	8	47	1.72
41159030--41159081	20	2.6	19	82	8	59	34	13	9	42	1.77
41160252--41160337	35	2.5	35	81	9	106	45	0	4	50	1.22
41160279--41160339	24	2.5	23	80	15	61	45	0	4	49	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41161636--41161706	3	23.7	3	100	0	142	33	0	0	66	0.92
41161857--41161920	27	2.5	27	80	12	73	39	0	26	34	1.57
41168246--41168374	27	4.8	27	82	4	154	32	20	22	24	1.98
41168246--41168374	54	2.4	53	87	3	170	32	20	22	24	1.98
41175829--41175863	17	2.1	16	89	5	52	37	0	2	60	1.12
41189426--41189481	24	2.3	24	75	6	60	26	5	1	66	1.23
41190080--41190130	17	3.0	17	94	0	84	31	19	15	33	1.93
41191238--41191340	45	2.3	46	91	1	163	42	20	16	20	1.89
41192489--41192521	17	1.9	17	100	0	66	9	12	0	78	0.95
41192663--41192697	5	7.0	5	100	0	70	60	0	0	40	0.97
41199268--41199363	44	2.2	44	84	0	120	32	3	22	41	1.70
41199634--41199675	13	3.1	14	83	10	52	73	4	0	21	1.01
41200100--41200151	25	2.2	22	83	10	59	65	1	1	30	1.14
41205971--41206062	43	2.1	43	95	0	166	43	7	31	17	1.77
41210551--41210839	54	5.4	54	81	4	289	44	20	17	17	1.87
41210551--41210865	81	3.9	79	80	9	287	43	20	17	18	1.88
41210551--41210865	27	11.7	26	82	6	251	43	20	17	18	1.88
41211042--41211107	26	2.5	26	79	13	73	19	25	21	33	1.97
41211205--41211270	33	2.0	33	84	0	87	25	22	21	30	1.99
41218357--41218396	17	2.4	16	88	12	55	50	7	7	35	1.59
41218609--41218777	57	3.0	57	91	0	275	21	19	13	44	1.85
41224299--41224343	22	2.0	22	87	8	65	17	6	48	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41231360--41231540	57	3.2	57	90	0	281	22	17	13	46	1.82
41232602--41232683	30	2.7	30	92	0	128	46	8	21	23	1.79
41232606--41232696	15	6.1	15	69	11	53	42	7	21	27	1.80
41237287--41237364	15	5.2	15	67	11	61	44	7	21	25	1.79
41237283--41237364	30	2.7	30	94	0	137	46	7	21	24	1.77
41240507--41240570	20	3.2	20	78	10	69	39	9	6	45	1.62
41249441--41249500	28	2.1	28	82	11	70	30	0	13	56	1.37
41249828--41249884	30	1.9	30	88	0	87	26	17	22	33	1.96
41249968--41249996	10	2.7	11	89	10	51	27	0	13	58	1.36
41251267--41251340	30	2.5	30	93	0	130	52	16	5	25	1.64
41251376--41251424	22	2.2	22	81	0	62	59	8	12	20	1.58
41254265--41254297	13	2.6	13	90	4	50	66	0	9	24	1.20
41255238--41255294	23	2.5	23	97	0	105	43	21	0	35	1.52
41259800--41259905	20	5.3	20	80	2	115	30	6	17	45	1.74
41259826--41259905	39	2.0	40	87	2	117	27	5	20	47	1.70
41260006--41260050	19	2.4	18	82	13	56	28	6	17	46	1.73
41260190--41260228	20	2.0	20	85	10	53	33	5	12	48	1.63
41276467--41276509	22	2.0	22	100	0	86	51	30	13	4	1.62
41292363--41292504	50	2.8	50	85	1	185	23	30	21	24	1.98
41294262--41294286	13	1.9	13	100	0	50	20	8	8	64	1.46
41309382--41309413	7	4.7	7	92	7	57	28	0	12	59	1.34
41309382--41309413	13	2.4	14	89	10	57	28	0	12	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41313529--41313816	126	2.3	126	90	0	459	27	20	17	34	1.95
41313849--41314179	97	3.5	96	89	6	487	39	17	2	40	1.62
41313849--41314172	95	3.4	95	89	5	485	39	17	2	41	1.62
41315311--41315402	41	2.2	42	92	5	161	21	10	23	43	1.84
41315807--41315839	17	1.9	17	88	11	50	21	0	33	45	1.52
41318794--41318820	6	4.5	6	100	0	54	14	0	0	85	0.61
41321432--41321474	19	2.3	19	87	0	68	65	11	2	20	1.36
41325412--41325444	9	3.7	9	91	0	57	24	6	18	51	1.68
41326008--41326051	23	1.9	23	85	0	61	54	9	2	34	1.44
41330370--41330447	25	3.1	25	76	10	79	33	21	23	21	1.97
41330487--41330631	25	5.8	25	77	8	143	36	17	26	19	1.94
41330461--41330600	75	1.9	75	81	3	174	35	17	25	20	1.95
41330495--41330631	50	2.7	50	86	0	184	35	18	26	19	1.95
41336610--41336756	75	2.0	75	82	5	181	37	19	23	19	1.94
41336643--41336814	50	3.4	50	81	6	195	37	17	26	19	1.93
41336648--41336812	75	2.2	75	82	7	201	37	17	26	18	1.93
41336643--41336814	25	6.9	25	80	5	177	37	17	26	19	1.93
41343590--41343639	21	2.2	21	82	10	55	36	10	4	50	1.55
41348247--41348310	23	2.8	21	75	15	56	68	3	1	26	1.13
41353308--41353359	24	2.2	24	89	0	77	55	9	1	32	1.43
41361689--41361774	39	2.3	38	78	11	88	55	2	2	39	1.25
41372115--41372146	15	2.1	15	94	0	55	50	3	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373609--41373650	18	2.4	18	96	4	77	61	4	0	33	1.17
41378806--41378847	19	2.2	19	87	8	59	71	2	0	26	0.98
41380905--41380957	19	2.8	19	78	16	56	39	16	1	41	1.60
41381009--41381033	5	5.0	5	100	0	50	40	40	0	20	1.52
41381696--41381731	14	2.6	14	100	0	72	19	55	5	19	1.62
41397141--41397183	14	2.9	15	86	6	61	23	23	23	30	1.99
41398266--41398293	12	2.3	12	100	0	56	32	42	25	0	1.55
41399047--41399092	23	2.0	23	86	0	65	41	15	17	26	1.88
41399126--41399208	16	5.4	16	72	7	64	21	18	37	22	1.94
41399126--41399230	30	3.5	30	78	7	122	23	17	35	23	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175