genome.fa.s16.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  94  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30022390--30022564	50	3.4	50	78	7	145	24	29	20	26	1.99
30022427--30022563	50	2.6	52	82	9	170	23	32	20	24	1.98
30022909--30022969	30	2.1	29	84	3	77	31	19	11	37	1.87
30032440--30032535	30	3.4	30	68	21	98	47	15	11	25	1.79
30032427--30032539	54	2.1	54	96	0	208	50	13	12	23	1.75
30039324--30039381	15	4.0	14	74	14	55	6	10	6	75	1.17
30039382--30039407	13	2.0	13	100	0	52	15	15	0	69	1.20
30043222--30043248	6	4.5	6	100	0	54	48	0	0	51	1.00
30043332--30043377	18	2.8	17	78	15	53	30	41	28	0	1.56
30044005--30044105	50	2.0	50	86	3	141	32	15	11	39	1.84
30045045--30045074	13	2.3	13	94	0	51	40	0	3	56	1.16
30046172--30046240	31	2.3	29	81	13	79	50	5	4	39	1.46
30047296--30047359	3	21.0	3	72	15	51	60	1	7	29	1.34
30047384--30047421	19	2.0	20	85	15	53	57	0	13	28	1.36
30048572--30048608	17	2.1	19	90	10	60	2	2	16	78	0.98
30048813--30049454	44	14.5	44	75	2	498	30	21	17	31	1.96
30048869--30049460	177	3.3	176	82	4	636	30	20	17	31	1.95
30048812--30049460	265	2.4	266	82	3	729	30	21	17	31	1.96
30050023--30050111	44	2.0	44	95	0	160	55	10	12	22	1.67
30054095--30054342	50	4.8	49	83	6	253	27	18	29	24	1.98
30054095--30054342	100	2.4	102	82	6	279	27	18	29	24	1.98
30054106--30054391	150	1.9	153	81	6	357	27	19	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30058923--30058983	3	20.0	3	73	9	52	60	1	8	29	1.35
30059008--30059045	19	2.0	20	85	15	53	57	0	13	28	1.36
30059826--30059869	23	1.9	23	86	9	63	13	4	4	77	1.08
30059820--30059858	20	2.0	19	85	14	53	12	2	2	82	0.89
30065718--30065771	20	2.7	20	85	0	63	35	7	5	51	1.53
30066376--30066537	86	1.9	84	84	2	216	30	14	11	43	1.81
30068339--30068398	30	2.0	30	83	0	75	26	30	28	15	1.96
30076984--30077017	17	1.9	18	94	5	61	29	2	14	52	1.56
30084060--30084111	20	2.6	20	85	11	79	32	5	7	53	1.53
30084558--30084604	22	2.1	23	88	4	69	27	2	4	65	1.22
30096139--30096178	11	3.3	12	86	10	55	32	0	2	65	1.06
30117701--30117794	3	33.0	3	77	14	92	65	1	30	2	1.11
30119380--30119451	30	2.5	28	74	12	74	34	15	13	36	1.87
30124438--30124575	41	3.4	41	82	4	161	39	24	16	19	1.92
30130384--30130745	46	8.6	44	81	14	346	30	21	13	35	1.91
30130516--30130704	36	5.0	36	80	12	216	31	20	11	37	1.87
30130427--30130745	82	3.9	82	82	12	379	31	21	12	35	1.90
30130473--30130709	118	2.0	118	90	1	377	31	20	12	35	1.90
30139143--30139445	80	3.8	79	88	3	376	26	28	21	24	1.99
30139173--30139445	120	2.3	120	87	4	381	27	29	20	23	1.99
30139143--30139392	40	6.3	40	93	0	385	26	29	21	23	1.99
30139377--30139454	40	1.9	41	82	10	97	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30147101--30147403	40	7.6	40	89	3	389	26	28	20	24	1.99
30152149--30152212	33	2.0	32	84	3	83	20	23	20	35	1.96
30152174--30152233	27	2.3	26	85	2	75	21	23	20	35	1.96
30155023--30155193	93	1.8	93	93	0	297	21	20	29	29	1.98
30155026--30155198	46	3.7	46	79	13	210	21	20	28	30	1.98
30159368--30159574	27	7.6	27	93	3	207	30	28	14	26	1.95
30159368--30159574	55	3.8	55	96	0	360	30	28	14	26	1.95
30177326--30177581	45	5.7	45	78	9	173	20	21	16	42	1.89
30177368--30177581	45	4.8	44	78	9	191	21	19	16	42	1.90
30177507--30177631	45	2.8	45	78	4	126	24	19	13	42	1.87
30180080--30180257	90	2.0	90	81	0	212	34	21	15	28	1.94
30181176--30181233	20	2.9	19	77	12	55	44	1	1	51	1.21
30181192--30181247	20	2.9	19	82	7	69	39	1	5	53	1.34
30181182--30181245	20	3.3	19	82	8	67	40	1	3	54	1.25
30185305--30185348	22	2.0	22	100	0	88	31	9	9	50	1.65
30189466--30189650	43	4.3	43	87	0	244	28	31	17	22	1.97
30189466--30189650	86	2.2	86	88	0	280	28	31	17	22	1.97
30193236--30193288	22	2.4	22	83	3	61	39	33	0	26	1.57
30193270--30193297	14	2.0	14	100	0	56	28	42	0	28	1.56
30193294--30193334	21	2.0	20	85	4	55	41	36	0	21	1.54
30193567--30193606	21	2.0	21	95	5	73	52	30	0	17	1.45
30193566--30193637	15	5.1	14	73	15	58	45	34	0	19	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30194104--30194129	12	2.2	12	100	0	52	46	30	15	7	1.74
30196310--30196357	4	12.0	4	100	0	96	25	0	25	50	1.50
30206095--30206147	23	2.4	22	76	20	56	9	16	1	71	1.21
30213191--30213229	20	2.0	20	94	0	69	35	7	5	51	1.53
30216420--30216503	27	3.1	27	81	5	91	28	20	16	34	1.94
30216773--30216834	33	1.9	32	87	9	90	32	14	24	29	1.94
30220547--30220580	16	2.2	15	89	5	50	55	2	0	41	1.15
30233380--30233412	6	5.5	6	100	0	66	84	0	15	0	0.61
30236109--30236138	6	4.8	6	95	4	51	16	30	0	53	1.44
30237842--30237880	19	2.1	19	100	0	78	33	10	25	30	1.89
30240488--30240535	24	2.0	24	95	0	87	35	14	25	25	1.94
30240512--30240694	50	3.7	50	79	8	194	30	20	27	22	1.98
30246316--30246600	50	5.7	50	79	4	247	28	21	28	22	1.99
30248205--30248379	33	5.3	33	81	2	163	42	14	24	17	1.87
30257345--30257635	50	5.8	50	83	0	296	21	28	22	27	1.99
30268098--30268266	82	2.1	82	98	0	329	36	21	13	27	1.92
30278392--30278416	7	3.6	7	100	0	50	16	0	36	48	1.46
30289453--30289642	51	3.8	50	80	3	202	24	16	27	31	1.96
30289644--30289742	46	2.2	43	82	12	119	24	19	24	32	1.97
30300757--30300798	7	6.0	7	88	0	57	19	50	0	30	1.48
30300758--30300799	21	2.0	21	90	9	68	21	47	0	30	1.51
30311739--30311923	51	3.7	50	78	6	203	29	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30311737--30311921	101	1.8	101	88	3	282	30	28	17	24	1.97
30315505--30315535	16	2.0	15	93	6	53	32	32	12	22	1.92
30315764--30315805	21	2.0	21	95	0	75	38	21	0	40	1.53
30322060--30322238	27	6.6	27	79	8	166	26	14	29	30	1.95
30322057--30322238	82	2.2	81	83	3	240	26	14	28	30	1.95
30325356--30325453	33	3.0	33	75	0	106	15	23	18	42	1.88
30330859--30331009	27	5.5	27	92	3	230	27	13	28	31	1.94
30330859--30331009	55	2.7	55	93	0	248	27	13	28	31	1.94
30338861--30339012	27	5.6	27	92	3	232	26	13	28	30	1.94
30338861--30339012	55	2.8	55	93	0	250	26	13	28	30	1.94
30352369--30352421	28	1.9	27	84	3	70	49	1	5	43	1.37
30352369--30352428	28	2.2	28	81	3	68	46	1	8	43	1.43
30356986--30357047	27	2.3	27	80	2	72	41	20	17	19	1.90
30359191--30359232	22	2.0	22	86	13	63	54	0	0	45	0.99
30359194--30359227	16	2.2	15	89	5	50	55	0	0	44	0.99
30363248--30363281	12	2.7	13	90	9	61	52	5	32	8	1.56
30363915--30363968	27	2.0	28	85	3	74	46	1	9	42	1.46
30364102--30364390	68	4.2	67	81	9	277	35	16	22	24	1.95
30364101--30364390	136	2.1	136	81	4	343	36	16	22	24	1.94
30369618--30369703	45	1.9	45	87	0	127	41	12	23	22	1.88
30372983--30373103	60	2.0	60	100	0	242	26	14	23	36	1.92
30375163--30375691	263	2.0	265	95	1	945	31	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30385591--30385765	27	6.4	27	81	6	183	25	15	28	30	1.96
30406918--30407095	27	6.6	27	81	6	189	25	15	28	30	1.96
30410744--30410782	10	3.8	10	86	3	51	35	2	0	61	1.10
30416357--30416491	44	3.1	44	69	14	145	45	20	7	27	1.77
30416597--30416765	91	1.9	91	89	2	268	28	7	7	56	1.53
30417256--30417295	21	1.9	21	89	0	62	15	20	37	27	1.92
30418211--30418235	12	2.1	12	100	0	50	64	8	0	28	1.22
30429332--30429360	12	2.3	13	94	5	51	82	0	0	17	0.66
30433061--30433099	15	2.4	16	87	8	53	35	0	0	64	0.94
30433511--30433566	21	2.6	22	86	8	71	57	1	0	41	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175