genome.fa.s16.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  175  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52965934--52965996	30	2.1	30	87	0	90	28	3	12	55	1.52
52966314--52966339	6	4.3	6	100	0	52	0	15	0	84	0.62
52967202--52967230	9	3.0	10	90	10	51	41	0	0	58	0.98
52967169--52967279	47	2.4	47	71	14	104	45	2	0	51	1.21
52977520--52977558	16	2.4	17	86	4	53	38	0	5	56	1.22
52987683--52987729	2	24.0	2	91	4	78	0	46	0	53	1.00
52989787--52989845	31	1.9	31	82	0	73	28	18	15	37	1.91
53005938--53006085	42	3.5	42	83	0	172	42	18	22	15	1.88
53005961--53006085	21	6.0	21	70	3	81	41	18	24	16	1.89
53006016--53006094	21	3.8	21	73	6	70	45	17	18	17	1.86
53006018--53006111	21	4.5	20	73	7	62	46	18	20	14	1.83
53008293--53008331	20	1.9	20	89	5	60	28	2	2	66	1.18
53020089--53020123	3	11.7	3	87	0	52	62	2	2	31	1.24
53024247--53024284	19	2.0	19	100	0	76	31	5	21	42	1.75
53037275--53037342	16	4.2	16	90	7	102	27	0	33	38	1.57
53037275--53037342	32	2.1	32	94	0	118	27	0	33	38	1.57
53037472--53037781	157	2.0	157	93	0	530	43	3	5	47	1.42
53048182--53048228	18	2.6	18	89	3	67	44	12	12	29	1.80
53048194--53048229	18	2.0	18	100	0	72	44	16	11	27	1.82
53052853--53052901	24	2.0	24	100	0	98	20	16	20	42	1.89
53063680--53063728	22	2.3	22	86	13	68	65	2	24	8	1.31
53065338--53065372	3	11.7	3	100	0	70	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53069703--53069746	3	14.7	3	100	0	88	31	0	0	68	0.90
53069747--53069930	72	2.6	72	99	0	359	27	6	23	41	1.79
53071190--53071251	31	2.0	31	84	6	81	30	8	4	56	1.49
53074475--53074570	31	3.1	31	95	3	174	31	9	13	45	1.75
53077620--53077681	32	1.9	32	96	0	115	27	32	6	33	1.82
53087096--53087161	25	2.6	25	90	2	96	66	1	0	31	1.01
53088315--53088339	2	12.5	2	100	0	50	0	48	0	52	1.00
53091744--53091789	24	1.9	24	95	0	83	36	8	8	45	1.66
53091743--53091795	24	2.2	24	86	0	79	35	7	7	49	1.60
53094123--53094149	13	2.1	13	100	0	54	14	14	40	29	1.86
53111218--53111382	78	2.1	76	78	14	169	34	6	1	58	1.31
53111289--53111333	17	2.6	17	82	0	54	22	2	0	75	0.91
53111188--53111378	94	2.2	88	84	15	249	34	5	1	59	1.27
53116856--53117036	86	2.1	86	98	1	355	40	4	7	47	1.52
53117111--53117213	51	2.0	51	94	3	181	44	18	8	28	1.79
53117159--53117269	33	3.4	34	81	10	106	42	17	9	31	1.80
53120292--53121636	120	11.2	120	96	0	2417	43	2	6	47	1.43
53121364--53121520	30	5.2	30	62	22	78	44	3	4	47	1.39
53121585--53121619	18	2.0	17	88	5	52	45	0	0	54	0.99
53121784--53121874	45	2.0	45	85	2	121	37	28	6	27	1.82
53121855--53121923	16	4.2	16	92	3	120	36	36	1	26	1.66
53121855--53121923	33	2.1	32	94	2	120	36	36	1	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53122936--53123004	29	2.3	29	85	5	84	47	15	14	21	1.81
53124861--53125131	147	1.8	147	90	0	434	44	15	28	11	1.81
53126762--53126815	6	9.0	6	89	0	63	44	0	55	0	0.99
53126762--53126815	14	3.9	14	85	0	63	44	0	55	0	0.99
53126765--53126815	20	2.5	20	93	0	84	43	0	56	0	0.99
53134717--53134763	21	2.2	21	84	0	58	0	23	6	70	1.10
53135975--53136089	34	3.4	34	84	4	135	43	0	18	37	1.56
53136190--53136580	126	3.1	126	84	4	492	38	16	16	28	1.90
53136209--53136546	124	2.7	125	87	3	477	41	15	16	26	1.89
53140490--53140993	46	10.6	46	75	14	393	33	15	21	28	1.94
53140672--53140715	21	2.1	21	100	0	88	38	13	22	25	1.91
53140626--53140761	67	2.0	67	95	0	245	36	15	20	27	1.93
53140580--53140807	113	2.0	113	93	1	386	35	15	20	28	1.93
53140534--53140853	159	2.0	159	92	1	534	35	15	20	28	1.94
53140490--53140899	205	2.0	204	93	0	694	34	15	20	29	1.94
53140490--53140945	251	1.8	250	93	1	788	34	15	20	29	1.94
53140693--53140993	138	2.2	137	93	1	516	33	15	21	28	1.95
53143397--53143516	51	2.4	51	88	0	177	35	15	22	27	1.94
53147171--53147203	13	2.4	14	90	5	50	48	0	3	48	1.17
53151851--53151993	69	2.1	69	98	1	279	49	2	6	40	1.44
53154010--53154036	12	2.2	12	100	0	54	51	14	25	7	1.68
53170791--53170818	1	28.0	1	100	0	56	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53182031--53182241	77	2.7	77	91	0	350	31	24	19	24	1.98
53191699--53191732	15	2.3	15	89	0	50	38	0	0	61	0.96
53191673--53191733	27	2.2	29	80	14	74	34	1	1	62	1.15
53194559--53194821	132	2.0	132	95	0	472	29	20	18	31	1.96
53204550--53204578	14	2.1	14	100	0	58	48	37	0	13	1.43
53215695--53215734	21	1.9	21	100	0	80	5	15	30	50	1.65
53215774--53215840	31	2.1	32	86	13	95	17	20	28	32	1.96
53216728--53216765	18	2.1	18	100	0	76	73	5	5	15	1.19
53219691--53219735	22	2.0	22	100	0	90	55	26	8	8	1.60
53224647--53224683	19	1.9	19	88	0	56	8	0	32	59	1.27
53226371--53226508	35	3.9	35	76	7	145	23	28	14	34	1.94
53229431--53229457	14	1.9	14	100	0	54	40	7	51	0	1.30
53233327--53233400	24	3.1	24	67	21	73	17	21	1	59	1.45
53234192--53234230	20	2.0	20	85	14	55	61	0	2	35	1.10
53238529--53238567	19	2.1	19	100	0	78	30	10	10	48	1.70
53238547--53238617	31	2.3	30	83	7	97	32	9	8	49	1.66
53238804--53238896	31	3.1	30	81	6	107	18	26	26	27	1.98
53242185--53242374	94	2.0	94	96	0	353	20	28	18	32	1.96
53245028--53245072	15	2.9	16	83	3	56	8	6	13	71	1.31
53245240--53245311	21	3.4	21	100	0	144	9	25	29	36	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175

The End!