genome.fa.s16.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  53  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15429713--15429897	51	3.7	50	84	5	239	31	23	14	29	1.94
15435767--15435797	9	3.4	9	90	0	53	25	12	22	38	1.90
15435851--15435887	9	4.1	9	92	0	65	45	13	10	29	1.77
15436101--15436160	30	2.0	31	86	3	86	20	36	1	41	1.62
15436798--15436831	5	6.8	5	100	0	68	20	20	17	41	1.91
15438245--15438390	41	3.6	41	95	0	247	24	21	23	29	1.99
15439018--15439093	39	1.9	40	84	7	102	42	11	3	42	1.60
15441185--15441232	14	3.4	14	88	5	69	47	29	0	22	1.51
15441185--15441225	15	2.8	15	92	3	66	48	29	0	21	1.50
15441221--15441262	18	2.3	19	80	12	52	50	14	0	35	1.43
15447147--15447197	20	2.5	20	93	0	84	9	33	21	35	1.86
15469750--15469830	40	2.0	41	85	4	110	22	25	28	23	1.99
15469924--15470138	96	2.2	97	88	3	319	42	1	17	39	1.58
15470712--15470747	18	2.0	18	88	0	54	44	0	0	55	0.99
15470873--15470977	36	2.8	37	88	8	142	23	24	23	27	2.00
15472978--15473041	34	1.9	33	84	9	85	32	0	1	65	1.02
15473470--15473507	19	2.1	19	90	9	62	42	0	0	57	0.98
15473788--15473822	12	2.9	12	82	0	52	34	0	11	54	1.37
15481555--15481662	51	2.1	52	86	5	148	47	7	13	31	1.71
15481772--15481824	28	2.0	26	85	7	70	37	0	18	43	1.51
15482170--15482525	125	2.8	125	94	0	613	23	14	31	31	1.94
15491666--15491699	17	2.0	18	88	11	54	47	11	0	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15507130--15507163	8	4.2	8	100	0	68	14	11	14	58	1.63
15513728--15513774	25	1.9	24	82	4	58	27	14	17	40	1.89
15513955--15514051	51	1.9	50	81	6	115	30	12	23	32	1.92
15513955--15514076	25	4.9	24	74	12	93	29	13	24	32	1.93
15513724--15514102	76	5.0	76	82	0	384	26	12	23	37	1.90
15513918--15514135	76	2.9	76	85	0	220	28	13	25	32	1.93
15520566--15520590	13	1.9	13	100	0	50	32	20	16	32	1.94
15522005--15522220	47	4.6	47	88	1	306	31	7	31	29	1.86
15529422--15529450	6	4.8	6	100	0	58	65	0	0	34	0.93
15529435--15529490	22	2.5	23	82	2	69	51	1	1	44	1.22
15529466--15529505	16	2.5	16	91	0	62	47	2	7	42	1.45
15529494--15529691	65	3.1	66	91	5	313	40	5	8	45	1.57
15530621--15530657	20	2.0	20	89	10	60	54	0	8	37	1.30
15533220--15533244	5	5.0	5	100	0	50	20	0	0	80	0.72
15534840--15534891	20	2.7	20	82	5	63	46	15	0	38	1.46
15535567--15535593	10	2.7	10	100	0	54	40	0	0	59	0.98
15535663--15535698	19	1.9	18	88	5	54	47	0	2	50	1.15
15536084--15536119	16	2.2	17	95	5	65	63	0	0	36	0.94
15538649--15538795	56	2.7	54	82	12	176	25	25	14	34	1.94
15543454--15543713	40	6.5	40	83	1	290	34	15	30	20	1.93
15546099--15546142	16	2.6	17	86	10	56	31	13	2	52	1.53
15549422--15549602	80	2.3	80	86	3	240	33	16	30	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15549422--15549602	40	4.5	40	81	2	211	33	16	30	19	1.94
15549641--15549678	18	2.1	18	85	9	51	47	5	7	39	1.55
15550706--15550803	39	2.5	39	91	1	153	35	7	13	43	1.71
15553868--15553901	18	1.9	18	88	5	52	35	11	20	32	1.89
15559815--15559924	37	3.0	37	90	1	177	18	13	25	42	1.87
15585856--15585933	29	2.7	28	84	11	104	25	14	30	29	1.94
15585886--15586213	174	1.9	174	94	0	575	30	14	24	30	1.95
15600073--15600191	40	3.0	40	85	3	123	27	19	24	28	1.98
15600531--15600602	20	3.3	20	70	17	63	33	5	16	44	1.71
15600528--15600614	45	2.0	43	93	4	147	33	5	17	43	1.72
15600541--15600614	25	3.2	25	75	18	95	31	6	17	44	1.75
15607283--15607326	22	2.0	22	100	0	88	27	18	13	40	1.88
15620210--15620453	50	4.7	50	79	8	231	26	20	28	24	1.99
15626233--15626279	24	2.0	24	91	0	76	27	17	31	23	1.96
15629963--15630041	35	2.4	34	81	8	92	58	3	1	36	1.24
15647408--15647470	28	2.2	29	72	13	69	31	4	15	47	1.67
15654128--15654165	18	2.1	18	100	0	76	26	5	7	60	1.46
15654686--15654766	40	2.1	39	85	2	108	20	25	29	23	1.99
15654802--15654844	22	2.0	21	86	4	59	11	0	37	51	1.39
15662597--15662640	23	1.9	23	100	0	88	36	2	11	50	1.51
15662599--15662640	13	3.5	13	75	18	54	35	2	11	50	1.52
15670027--15670065	16	2.5	16	87	4	53	84	2	0	12	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15670643--15670689	23	2.0	23	87	0	67	34	2	21	42	1.65
15673488--15673682	97	2.0	97	98	0	381	18	14	17	48	1.81
15674510--15674545	18	2.1	18	90	10	58	36	0	5	58	1.22
15678665--15678771	44	2.5	42	78	14	128	26	15	27	30	1.96
15683397--15683431	6	5.5	6	87	12	52	17	17	0	65	1.27
15685597--15685657	23	2.6	23	78	19	63	39	6	4	49	1.50
15688718--15688933	85	2.5	86	85	7	283	37	21	9	31	1.85
15688786--15688953	85	2.0	85	83	6	216	39	20	8	30	1.82
15689037--15689184	59	2.5	58	79	9	138	59	3	6	30	1.40
15689416--15689467	10	5.4	10	88	11	74	23	1	0	75	0.91
15689405--15689450	20	2.3	20	85	7	58	32	0	0	67	0.91
15689399--15689479	28	2.8	29	76	10	78	28	3	0	67	1.07
15689416--15689467	18	2.7	20	88	11	74	23	1	0	75	0.91
15689451--15689477	12	2.2	12	100	0	54	14	7	0	77	0.97
15689416--15689468	19	2.8	18	82	5	61	22	1	0	75	0.90
15689415--15689480	19	3.5	18	77	8	51	25	3	0	71	1.01
15689759--15689798	19	2.1	19	85	4	53	47	0	7	45	1.31
15690479--15690531	23	2.4	21	79	11	61	45	0	1	52	1.11
15690541--15690588	20	2.4	20	82	6	62	29	0	2	68	1.01
15694914--15695013	42	2.4	42	91	3	157	21	30	12	37	1.89
15696794--15696828	18	2.0	18	88	5	54	37	22	17	22	1.94
15700330--15700373	18	2.5	17	82	10	52	27	4	4	63	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15703725--15703771	25	1.9	25	86	4	69	17	23	19	40	1.91
15703930--15703984	25	2.2	25	83	6	67	21	23	23	30	1.99
15703956--15704082	49	2.6	50	81	8	136	21	26	19	32	1.97
15708789--15708836	24	2.1	23	88	11	73	37	2	0	60	1.09
15718346--15718412	21	3.2	21	81	8	73	34	11	1	52	1.48
15718330--15718394	28	2.3	28	77	15	71	32	18	0	49	1.48
15718317--15718412	7	13.7	7	73	8	52	32	18	1	47	1.56
15718468--15718549	38	2.2	38	100	0	164	35	13	4	46	1.65
15719129--15719164	8	4.5	8	100	0	72	22	0	0	77	0.76
15721565--15721606	22	1.9	22	85	9	59	38	2	4	54	1.34
15724934--15724963	2	15.5	2	93	6	53	50	50	0	0	1.00
15725609--15725637	9	3.2	9	100	0	58	48	0	10	41	1.37
15735384--15735436	26	2.0	26	100	0	106	16	18	33	30	1.94
15735448--15735648	85	2.4	84	86	2	260	24	16	24	33	1.96
15735413--15735636	43	5.3	42	74	13	156	23	16	24	35	1.95
15739120--15739178	29	2.1	29	93	3	102	32	6	13	47	1.69
15742393--15742456	29	2.2	29	81	8	78	42	7	4	45	1.54
15744829--15744883	26	2.1	26	96	0	101	18	18	7	56	1.64
15748851--15748879	13	2.2	13	100	0	58	51	10	0	37	1.36
15751720--15751773	20	2.7	20	85	0	63	50	16	9	24	1.74
15752692--15752752	32	1.9	31	83	3	77	36	22	11	29	1.90
15756275--15756478	63	3.3	62	80	2	214	28	27	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15758089--15758113	13	1.9	13	100	0	50	36	0	8	56	1.29
15758220--15758350	50	2.6	50	85	0	181	28	22	27	21	1.99
15767213--15767761	31	17.9	31	73	13	377	33	7	15	43	1.74
15767207--15767749	92	5.9	91	82	2	647	33	7	16	43	1.75
15767207--15767750	184	3.0	184	89	3	803	33	7	15	43	1.75
15767231--15767760	61	8.6	61	74	11	363	33	6	16	43	1.74
15767551--15767806	61	4.2	63	76	10	165	32	7	16	43	1.75
15767678--15767786	31	3.6	30	80	7	121	32	11	14	41	1.83
15767927--15768048	43	2.9	41	79	8	131	28	16	26	28	1.97
15769536--15769664	63	2.0	63	86	0	177	25	27	19	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175