genome.fa.s16.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D03
Parameters: 2 7 7 80 10 50 1000
Length:  53248092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   

This is table  164  of  175  ( 20966 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49320887--49320989	28	3.6	28	71	15	93	10	53	3	32	1.54
49320894--49320983	21	4.4	21	62	27	50	10	54	4	31	1.53
49320975--49320999	6	4.2	6	100	0	50	16	48	0	36	1.46
49329753--49330081	87	3.9	87	83	6	347	25	22	21	30	1.99
49329765--49330213	44	10.5	42	71	14	264	26	21	21	30	1.98
49343724--49343787	15	3.8	16	73	26	60	9	1	45	43	1.45
49343725--49343802	37	2.1	37	97	0	147	11	2	43	42	1.54
49370493--49370535	17	2.5	17	92	0	68	20	27	27	23	1.99
49370745--49370805	25	2.4	25	88	0	77	24	3	18	54	1.58
49370857--49370902	21	2.2	21	84	0	56	28	0	30	41	1.56
49376211--49376353	67	2.1	67	79	6	155	46	7	4	41	1.52
49376893--49377087	98	2.0	98	91	0	318	36	24	10	27	1.89
49378866--49379294	9	49.0	9	72	14	303	44	19	1	34	1.59
49379003--49379294	34	8.6	34	75	10	201	44	20	1	33	1.60
49379002--49379271	104	2.7	101	84	6	323	44	20	1	33	1.60
49379215--49379294	25	3.2	25	79	13	60	45	21	0	33	1.52
49379940--49379994	25	2.2	25	90	0	83	25	3	18	52	1.61
49380041--49380094	15	3.7	15	80	2	56	22	0	42	35	1.54
49380041--49380086	22	2.1	22	84	4	58	23	0	41	34	1.55
49380086--49380155	35	1.9	36	82	5	88	25	0	30	44	1.55
49380304--49380348	15	3.0	15	90	0	63	20	0	37	42	1.52
49380304--49380355	22	2.4	21	84	9	68	21	1	36	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49403203--49403350	42	3.6	42	89	1	228	31	19	20	28	1.97
49403687--49403823	68	2.0	67	88	2	204	13	26	17	43	1.86
49405350--49405460	48	2.3	48	98	0	213	55	12	6	25	1.60
49409096--49409578	9	55.4	9	72	14	313	33	0	19	45	1.56
49409097--49409633	34	15.8	34	73	14	346	33	0	19	46	1.56
49409096--49409578	25	18.5	27	74	13	313	33	0	19	45	1.56
49409491--49409633	70	2.1	64	81	10	153	32	1	17	48	1.56
49411358--49411552	98	2.0	98	90	0	309	27	10	24	37	1.88
49415631--49415709	25	3.2	24	73	21	65	63	6	5	25	1.39
49415685--49415740	15	3.7	15	72	13	51	64	5	7	23	1.40
49415675--49415747	12	6.2	12	68	7	51	64	5	5	24	1.37
49417562--49417616	25	2.2	25	93	0	92	52	20	3	23	1.62
49417574--49417629	25	2.2	25	83	0	67	55	17	1	25	1.52
49417832--49417874	17	2.5	17	96	0	77	23	30	27	18	1.98
49421990--49422034	23	2.0	23	86	0	63	40	8	0	51	1.33
49434702--49434761	30	2.0	30	93	0	102	23	6	15	55	1.64
49435065--49435138	33	2.2	33	83	4	87	48	16	6	28	1.71
49438035--49438100	30	2.2	30	91	0	105	30	9	42	18	1.81
49438074--49438285	108	2.0	108	93	0	361	27	13	33	25	1.94
49438920--49438964	9	4.9	9	78	5	54	31	0	2	66	1.04
49438920--49438964	19	2.4	19	85	10	58	31	0	2	66	1.04
49439487--49439532	22	2.1	22	95	0	83	45	13	0	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49440620--49440675	29	1.9	29	88	0	85	37	17	7	37	1.78
49441200--49441227	13	2.2	13	100	0	56	25	7	7	60	1.48
49442576--49442601	11	2.4	11	100	0	52	53	15	0	30	1.42
49444569--49444663	47	2.0	46	83	2	118	33	18	7	40	1.79
49471449--49471507	30	2.0	30	93	0	100	23	6	15	54	1.65
49471805--49471878	33	2.2	33	83	4	87	48	16	6	28	1.71
49475046--49475097	24	2.0	27	85	14	74	25	0	5	69	1.10
49475579--49475617	20	2.0	20	100	0	78	43	15	0	41	1.46
49476621--49476675	29	1.9	29	88	3	85	36	18	7	38	1.78
49477180--49477205	12	2.2	12	100	0	52	26	7	7	57	1.54
49480483--49480578	47	2.0	47	83	0	120	33	18	7	40	1.78
49490564--49490831	133	2.0	133	92	0	446	23	12	23	41	1.88
49503181--49503227	21	2.3	21	85	10	62	44	36	0	19	1.51
49505730--49505773	24	1.9	22	86	9	61	43	9	0	47	1.35
49507815--49507848	10	3.4	10	87	0	50	76	0	8	14	1.01
49507920--49507956	11	3.2	12	81	14	51	64	0	0	35	0.94
49507963--49508008	23	2.0	22	83	4	56	63	2	0	34	1.07
49507908--49508094	10	18.8	10	68	17	61	59	3	1	36	1.21
49508999--49509141	9	14.7	9	68	21	67	40	2	3	53	1.30
49508996--49509091	39	2.4	39	76	13	97	36	3	4	56	1.34
49508998--49509093	20	4.8	20	74	13	81	37	3	4	55	1.35
49508999--49509094	30	3.2	29	74	8	86	38	3	4	54	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49508998--49509144	10	14.9	10	67	23	62	40	2	3	53	1.29
49518339--49518378	16	2.5	16	91	0	62	47	0	10	42	1.37
49518389--49518528	59	2.4	59	97	0	262	40	4	8	47	1.54
49518510--49518537	9	3.1	9	100	0	56	32	0	10	57	1.33
49518630--49518679	24	2.3	20	81	18	64	60	2	0	38	1.09
49518634--49518677	24	1.9	22	90	9	70	61	2	0	36	1.09
49518930--49519055	65	1.9	66	85	4	175	26	17	15	41	1.88
49525484--49525513	8	3.8	8	95	0	51	43	0	6	50	1.28
49527353--49527386	18	1.9	18	88	5	52	29	0	5	64	1.17
49527889--49527969	44	1.9	42	85	7	110	27	2	2	67	1.15
49527946--49527986	21	1.9	21	85	5	55	26	0	4	68	1.10
49547949--49548005	19	3.1	19	87	7	73	57	5	0	36	1.21
49547979--49548031	26	2.1	24	82	6	61	56	5	1	35	1.34
49547967--49548030	24	2.9	22	76	15	62	57	6	1	34	1.33
49548030--49548063	17	2.0	17	100	0	68	64	0	5	29	1.17
49549048--49549132	9	9.4	9	78	10	93	27	10	24	37	1.88
49549048--49549132	18	4.7	18	81	11	111	27	10	24	37	1.88
49549051--49549132	36	2.3	36	89	6	130	25	10	25	37	1.89
49558239--49558628	177	2.2	177	91	0	629	37	19	23	18	1.94
49560945--49560993	23	2.1	23	88	0	71	34	12	10	42	1.76
49560990--49561028	18	2.2	18	85	0	51	48	2	10	38	1.51
49561756--49561791	18	1.9	19	94	5	65	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49562189--49562258	32	2.2	32	90	5	108	54	11	12	21	1.69
49568344--49568378	16	2.2	16	90	10	54	45	0	0	54	0.99
49571745--49571935	96	2.0	96	94	0	337	34	10	21	32	1.89
49576324--49576360	19	1.9	19	88	0	56	37	2	32	27	1.71
49576537--49576639	48	2.1	50	87	5	147	32	25	16	26	1.96
49576806--49576840	12	3.0	12	91	4	54	45	0	11	42	1.40
49579673--49579709	19	1.9	19	88	0	56	64	8	8	18	1.45
49591403--49591450	19	2.6	17	79	20	53	50	4	0	45	1.21
49598286--49598362	16	4.5	18	67	17	56	32	3	0	63	1.12
49598478--49598525	22	2.3	20	82	10	53	60	0	0	39	0.97
49599843--49599971	63	2.0	63	100	0	258	29	25	15	29	1.96
49607703--49607728	8	3.2	8	100	0	52	34	23	0	42	1.54
49611727--49611871	37	3.9	37	87	0	200	40	6	0	52	1.28
49611721--49611871	19	8.1	18	76	5	140	39	6	0	53	1.27
49611742--49611895	74	2.1	72	83	4	193	42	5	0	51	1.26
49617931--49617966	9	3.9	9	85	7	54	75	0	0	25	0.81
49617926--49617966	9	4.2	10	78	15	50	75	0	0	24	0.80
49617926--49617966	19	2.1	20	90	4	66	75	0	0	24	0.80
49620347--49620376	3	10.0	3	100	0	60	33	0	0	66	0.92
49620701--49620731	14	2.2	14	100	0	62	41	12	6	38	1.69
49630861--49630901	21	2.0	21	90	0	64	19	29	21	29	1.98
49635189--49635221	14	2.3	15	94	5	59	33	24	6	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49640515--49640554	18	2.2	18	90	0	62	45	10	20	25	1.81
49641564--49641607	2	22.0	2	100	0	88	0	50	0	50	1.00
49645636--49645710	37	2.0	37	92	0	123	38	10	22	28	1.87
49660576--49660601	5	5.2	5	100	0	52	0	38	19	42	1.51
49660948--49661048	35	3.1	35	65	24	103	41	4	6	46	1.52
49660920--49661051	61	2.2	63	88	12	213	42	4	6	46	1.51
49660973--49661003	15	2.1	15	100	0	62	48	0	6	45	1.28
49660939--49661053	61	1.9	61	100	0	230	40	5	6	47	1.53
49665715--49665759	19	2.3	20	85	7	58	13	15	2	68	1.30
49668140--49668178	20	2.0	19	95	5	69	41	15	5	38	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175